Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  196  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61151866--61151982
58
2.0
58
100
0
234
37
13
16
32
1.88
61159672--61159755
30
2.7
31
81
7
91
46
8
10
34
1.69
61164595--61164657
30
2.1
30
87
0
90
25
6
14
53
1.64
61164703--61164829
63
2.0
63
96
0
236
27
3
13
55
1.56
61164844--61164876
11
2.9
12
86
13
52
66
0
0
33
0.92
61179011--61179039
2
14.5
2
100
0
58
48
0
0
51
1.00
61193338--61193662
118
2.7
120
83
6
381
19
14
23
41
1.89
61198322--61198357
6
6.0
6
86
0
54
13
55
0
30
1.39
61198321--61198356
18
2.0
18
94
0
63
11
58
0
30
1.33
61200501--61200564
32
2.0
32
87
6
94
45
7
21
25
1.78
61204720--61204782
32
2.1
29
82
14
74
44
9
14
31
1.77
61212280--61212306
13
2.1
13
100
0
54
37
0
22
40
1.54
61217760--61217817
22
2.6
22
83
5
64
46
1
5
46
1.35
61217770--61217842
23
3.4
21
81
9
67
46
0
4
49
1.21
61218343--61218447
31
3.4
30
74
11
104
50
7
4
37
1.52
61218677--61218899
112
2.0
114
83
5
290
31
13
16
38
1.87
61222644--61222686
22
2.0
22
86
9
61
55
0
0
44
0.99
61225911--61225944
17
2.0
17
94
0
59
47
2
5
44
1.42
61229173--61229279
54
2.0
54
85
3
144
17
55
3
23
1.58
61244385--61244428
12
3.7
12
87
0
61
38
11
20
29
1.87
61248185--61248223
21
1.9
20
84
5
51
43
2
20
33
1.65
61249661--61249707
21
2.2
22
84
3
60
57
6
14
21
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61250037--61250088
27
1.9
27
88
0
77
19
21
36
23
1.95
61250122--61250173
21
2.4
23
87
9
74
59
7
0
32
1.26
61250188--61250257
22
2.8
25
79
16
83
54
12
1
31
1.47
61251653--61251744
48
1.9
48
90
0
148
21
16
20
41
1.90
61252697--61252766
31
2.3
31
87
0
104
40
10
14
35
1.79
61253555--61253612
30
1.9
30
82
6
73
48
0
1
50
1.11
61258217--61258327
57
1.9
57
83
7
145
43
7
16
33
1.75
61260644--61260678
6
5.8
6
100
0
70
51
14
0
34
1.42
61272535--61272972
218
2.0
218
97
0
831
45
15
15
23
1.84
61272753--61273059
166
1.8
166
85
1
427
45
15
13
24
1.83
61273184--61273310
64
2.0
64
84
6
170
47
20
10
22
1.80
61273965--61274023
31
1.9
31
92
0
100
38
10
6
44
1.65
61277689--61277721
17
2.0
17
94
5
59
48
0
15
36
1.45
61280882--61280995
25
4.6
25
73
19
87
21
22
24
30
1.99
61280882--61280995
50
2.3
51
83
8
137
21
22
24
30
1.99
61290744--61290768
6
4.2
6
100
0
50
16
0
0
84
0.63
61291358--61291419
30
2.0
32
81
9
76
40
3
12
43
1.59
61291876--61291911
12
2.9
12
88
8
54
50
5
19
25
1.69
61294541--61294888
120
2.9
120
94
1
614
45
5
8
41
1.56
61295234--61295327
3
31.7
3
79
10
104
31
4
1
62
1.21
61295642--61295671
14
2.1
14
93
0
51
50
10
0
40
1.36
61296589--61296987
120
3.3
120
97
0
753
47
4
6
41
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61300098--61300358
120
2.2
119
86
5
382
43
5
8
42
1.57
61309913--61309937
12
2.1
12
100
0
50
20
16
40
24
1.91
61311698--61311753
28
2.1
27
81
15
64
51
3
0
44
1.18
61312491--61312528
20
1.9
19
85
15
51
55
0
10
34
1.34
61315402--61315441
22
1.9
22
90
10
66
50
0
2
47
1.14
61317636--61317694
24
2.5
23
84
10
75
1
37
0
61
1.07
61317636--61317694
23
2.6
23
82
15
68
1
37
0
61
1.07
61322457--61322496
2
20.0
2
100
0
80
50
0
0
50
1.00
61329074--61329112
14
2.8
13
88
7
51
25
0
5
69
1.09
61334610--61334652
21
2.0
21
100
0
86
34
18
32
13
1.90
61338810--61338849
20
2.0
20
90
0
62
50
10
10
30
1.69
61338798--61338864
34
1.9
35
87
3
100
46
11
8
32
1.72
61339420--61339462
7
6.0
7
81
5
50
55
0
4
39
1.20
61339420--61339463
15
3.0
14
80
9
52
56
0
4
38
1.20
61349457--61349515
4
13.8
4
83
13
73
0
23
0
76
0.79
61356490--61356542
22
2.4
23
87
6
74
62
3
9
24
1.42
61356491--61356542
21
2.5
20
84
9
59
63
3
7
25
1.38
61360521--61360590
35
2.0
35
100
0
140
37
17
8
37
1.80
61366429--61366462
17
2.0
17
88
0
50
85
5
0
8
0.75
61367079--61367137
22
2.9
19
76
13
73
30
16
30
22
1.96
61369364--61369408
2
22.5
2
100
0
90
48
0
0
51
1.00
61372193--61372302
58
1.9
58
84
0
148
22
16
12
48
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61377255--61377296
20
2.1
20
90
0
66
69
0
30
0
0.89
61380909--61380968
29
2.1
29
100
0
120
55
3
3
38
1.33
61381796--61381881
13
6.7
13
73
5
50
58
9
0
32
1.30
61381776--61381858
19
4.4
19
70
11
71
62
7
0
30
1.22
61392353--61392399
12
3.8
13
80
8
53
31
10
8
48
1.68
61395042--61395070
8
3.6
8
100
0
58
51
0
10
37
1.36
61398557--61398717
82
2.0
81
90
1
250
22
17
19
40
1.91
61402350--61402398
25
2.0
24
84
8
62
34
6
4
55
1.44
61402438--61402493
17
3.2
19
75
14
57
28
0
1
69
0.98
61402476--61402500
7
3.6
7
100
0
50
36
0
0
64
0.94
61407354--61407399
23
2.0
23
100
0
92
52
26
4
17
1.63
61417856--61418207
140
2.5
140
79
5
372
24
24
15
34
1.95
61420302--61420361
19
3.1
20
69
21
56
36
5
8
50
1.55
61420594--61420825
116
2.0
114
89
6
353
50
14
5
30
1.64
61434440--61434476
9
4.1
9
92
0
65
29
10
13
45
1.77
61438291--61438321
16
1.9
16
93
0
53
41
0
0
58
0.98
61439653--61439696
16
2.8
16
82
6
54
68
0
2
29
1.02
61440481--61440520
14
2.9
14
84
0
53
32
7
17
42
1.77
61440504--61440543
20
2.0
20
90
0
62
27
10
12
50
1.72
61440489--61440555
34
1.9
35
87
3
100
32
8
11
46
1.72
61441839--61441893
24
2.2
26
78
12
62
58
5
5
30
1.44
61442042--61442082
21
1.9
22
90
5
66
39
0
2
58
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61442363--61442397
15
2.2
16
95
5
63
57
2
0
40
1.14
61446964--61447003
13
3.2
13
85
3
55
62
7
2
27
1.35
61453244--61453295
27
2.0
27
84
3
70
36
3
1
57
1.28
61457993--61458087
2
48.5
2
91
8
160
48
1
0
50
1.07
61463422--61463462
15
2.6
16
81
14
50
63
7
0
29
1.21
61465817--61465880
33
1.9
33
87
6
94
26
25
21
26
2.00
61470894--61470937
2
22.0
2
100
0
88
50
0
0
50
1.00
61470943--61470972
6
5.0
6
100
0
60
66
16
0
16
1.25
61471109--61471144
18
1.9
19
94
5
65
50
5
0
44
1.25
61471113--61471155
18
2.3
18
84
11
52
51
6
0
41
1.29
61471239--61471286
22
2.2
22
85
7
62
50
0
2
47
1.12
61473264--61473523
139
1.9
138
88
5
400
31
13
21
33
1.92
61473395--61473870
160
3.0
158
84
2
612
31
16
21
30
1.95
61482906--61483171
101
2.6
101
85
6
360
31
13
10
44
1.78
61486142--61486166
12
2.1
12
100
0
50
56
8
0
36
1.29
61500019--61500078
29
2.1
29
100
0
120
60
6
6
26
1.47
61502621--61502682
6
9.7
6
81
10
70
80
0
1
17
0.79
61502609--61502656
19
2.5
19
89
0
69
81
4
0
14
0.84
61502620--61502682
7
9.6
7
81
10
71
80
0
1
17
0.78
61502621--61502682
13
4.8
13
84
4
81
80
0
1
17
0.79
61504827--61504863
16
2.3
16
95
0
65
37
0
5
56
1.22
61505846--61505881
17
2.1
18
89
5
56
27
0
0
72
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61509231--61509760
240
2.3
227
79
12
503
40
16
8
33
1.80
61511216--61511250
18
1.9
18
94
0
61
25
0
14
60
1.35
61511351--61511423
10
7.7
9
75
11
65
30
4
1
64
1.20
61511461--61511507
18
2.5
18
86
6
58
31
0
0
68
0.90
61511581--61511623
20
2.2
20
91
8
70
25
0
2
72
0.97
61511574--61511632
15
3.9
15
78
10
59
28
0
1
69
0.98
61511853--61511888
5
7.4
5
93
6
65
41
0
0
58
0.98
61513487--61513581
26
3.5
26
71
13
84
52
3
1
43
1.24
61515859--61515934
38
2.0
38
94
2
136
35
14
14
35
1.87
61524867--61524906
21
2.0
20
90
5
62
52
0
2
45
1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198