Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  39  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11662868--11662904
19
1.9
20
88
5
58
29
0
2
67
1.04
11662873--11662913
19
2.2
19
86
0
55
24
2
4
68
1.22
11662926--11662964
17
2.2
17
86
9
51
38
0
0
61
0.96
11663003--11663049
22
2.1
22
88
0
67
31
0
2
65
1.04
11665535--11665628
2
48.0
2
91
4
147
46
2
1
50
1.20
11666308--11666363
2
28.5
2
96
3
105
51
0
0
48
1.00
11678177--11678235
30
2.0
30
93
0
100
57
11
3
27
1.50
11678268--11678310
22
2.0
22
85
0
59
58
9
11
20
1.61
11678275--11678314
11
3.6
11
79
0
53
57
7
12
22
1.60
11678842--11678877
18
2.0
18
94
0
63
52
5
13
27
1.63
11691029--11691053
5
5.0
5
100
0
50
20
40
0
40
1.52
11693467--11693496
16
1.9
15
93
6
51
83
3
13
0
0.77
11698703--11698731
3
9.7
3
100
0
58
65
0
34
0
0.93
11704351--11704385
15
2.4
15
90
4
54
48
0
8
42
1.33
11710084--11710145
21
3.0
20
83
9
79
24
3
0
72
0.99
11710086--11710149
17
3.5
17
79
16
67
25
3
0
71
1.00
11710085--11710157
25
2.9
25
84
13
89
24
4
0
71
1.04
11710275--11710306
12
2.7
12
100
0
64
31
25
9
34
1.87
11710316--11710379
22
2.8
23
81
11
69
25
50
9
15
1.74
11711486--11711569
13
6.5
13
75
20
52
82
0
7
10
0.85
11711508--11711598
1
91.0
1
68
0
56
84
0
12
3
0.73
11711489--11711528
17
2.3
17
83
16
55
80
0
0
20
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11711490--11711598
21
4.9
23
84
11
70
82
0
10
7
0.84
11711501--11711593
15
6.1
16
81
10
81
83
0
10
5
0.79
11711533--11711598
6
10.7
6
93
6
114
84
0
15
0
0.61
11711508--11711598
44
2.0
44
87
6
130
84
0
12
3
0.73
11712150--11712184
15
2.4
15
90
4
54
48
0
8
42
1.33
11713935--11713992
30
1.9
30
86
6
82
36
22
8
32
1.85
11716514--11716549
18
1.9
19
88
5
56
27
0
5
66
1.13
11719217--11719284
11
5.7
11
80
13
73
67
1
10
20
1.28
11719219--11719249
16
2.0
16
93
6
55
70
0
12
16
1.16
11719236--11719317
19
3.7
22
76
14
80
71
2
8
17
1.21
11719236--11719284
11
4.4
11
89
5
80
71
2
8
18
1.21
11728059--11728135
30
2.6
30
85
2
93
20
27
24
27
1.99
11728274--11728321
10
5.0
10
77
10
55
27
39
2
31
1.68
11728272--11728321
9
5.3
9
80
4
55
26
40
2
32
1.67
11742131--11742184
27
2.0
28
92
3
92
25
29
22
22
1.99
11742055--11742362
103
3.0
102
93
0
499
32
26
19
21
1.97
11742203--11742358
33
4.6
33
70
23
126
33
26
20
19
1.97
11742952--11742985
11
2.8
12
91
8
52
35
8
11
44
1.72
11747128--11747168
20
2.0
20
85
4
55
63
19
0
17
1.31
11752761--11752795
10
3.2
11
88
12
54
17
37
0
45
1.48
11754653--11754687
18
1.9
18
94
0
61
25
31
8
34
1.86
11755053--11755092
7
5.6
7
82
5
53
47
40
0
12
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11755055--11755092
15
2.6
15
87
4
51
50
39
0
10
1.37
11755075--11755246
29
6.1
29
91
4
280
42
26
2
28
1.68
11755075--11755246
57
3.0
58
92
3
280
42
26
2
28
1.68
11755075--11755246
86
2.0
84
93
2
290
42
26
2
28
1.68
11755240--11755301
19
3.3
19
72
20
67
40
9
1
48
1.46
11755258--11755356
46
2.2
46
98
0
189
44
8
3
44
1.49
11755328--11755386
30
2.0
30
83
6
75
45
11
5
37
1.63
11758501--11758852
126
2.8
125
91
0
553
33
21
15
29
1.94
11762450--11762517
30
2.2
31
89
5
111
23
19
36
20
1.95
11764854--11764945
33
2.7
35
76
5
98
25
22
19
32
1.97
11766307--11766361
26
2.0
28
82
6
69
69
7
3
20
1.28
11769736--11769855
40
3.0
40
85
2
161
23
22
6
47
1.74
11773039--11773081
18
2.4
18
88
0
59
37
18
9
34
1.83
11777388--11777413
12
2.2
12
100
0
52
26
0
7
65
1.20
11778916--11779035
33
3.8
32
72
14
106
48
10
16
24
1.78
11789636--11789660
2
12.5
2
100
0
50
52
0
0
48
1.00
11789700--11789729
2
15.5
2
93
6
53
53
0
0
46
1.00
11789700--11789741
16
2.6
17
85
10
54
50
0
2
47
1.14
11789961--11790000
19
2.1
19
100
0
80
25
0
25
50
1.50
11790148--11790175
2
14.0
2
100
0
56
50
0
0
50
1.00
11790645--11790918
41
6.7
41
93
0
458
28
21
27
21
1.99
11799709--11800018
46
6.5
46
77
16
317
28
23
14
33
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11799750--11799877
62
2.0
64
94
5
226
28
25
12
33
1.92
11799709--11799923
108
2.0
107
96
0
394
27
24
14
33
1.95
11799814--11800017
92
2.2
92
94
3
360
29
23
14
33
1.94
11808931--11809009
6
12.3
7
88
9
68
27
0
1
70
0.95
11808940--11809012
3
24.7
3
92
2
121
28
0
1
69
0.96
11812236--11812298
31
2.0
33
84
6
85
15
6
4
73
1.21
11813336--11813393
22
2.6
22
83
0
80
32
10
17
39
1.83
11814528--11814561
17
2.0
17
88
0
50
44
8
0
47
1.34
11815665--11815707
13
3.3
12
87
9
50
41
0
6
51
1.29
11816787--11816884
27
3.6
27
83
0
133
21
28
24
25
1.99
11816837--11816911
14
5.4
14
73
13
57
25
32
22
20
1.98
11816901--11816932
14
2.3
14
94
0
55
15
34
25
25
1.95
11816943--11816987
16
2.8
16
80
12
65
26
20
24
28
1.99
11834186--11834211
5
5.2
5
100
0
52
38
19
19
23
1.93
11834852--11834911
30
2.0
31
86
3
86
40
0
40
20
1.52
11835064--11835100
9
4.1
9
92
0
65
29
10
13
45
1.77
11863697--11863783
23
3.7
23
77
10
79
57
10
4
27
1.51
11863915--11863952
19
2.0
20
84
5
51
63
7
0
28
1.23
11865241--11865278
20
2.0
20
90
10
62
18
0
5
76
0.97
11865804--11866077
44
6.3
44
71
13
154
29
25
18
25
1.98
11865614--11866078
218
2.1
217
90
1
723
29
26
17
26
1.97
11868458--11868515
13
4.5
13
74
20
50
8
5
6
79
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11873485--11873533
20
2.5
19
86
3
62
65
6
0
28
1.16
11882633--11882676
19
2.3
19
96
0
79
29
6
25
38
1.81
11895640--11895873
50
4.6
50
82
3
189
26
21
28
23
1.99
11895693--11895873
50
3.6
50
84
0
227
25
22
30
21
1.99
11896529--11896574
21
2.2
20
85
7
65
50
8
4
36
1.53
11896534--11896574
21
2.0
21
95
0
73
53
9
2
34
1.47
11906022--11906108
40
2.2
40
87
0
120
32
8
19
40
1.81
11906022--11906085
19
3.3
19
72
23
60
29
6
20
43
1.76
11906270--11906750
45
10.9
45
80
8
450
23
17
18
41
1.90
11906479--11906553
33
2.3
33
90
0
123
24
17
21
37
1.94
11906545--11906573
6
4.8
6
100
0
58
17
17
17
48
1.82
11906512--11906661
51
3.1
49
84
6
191
21
18
18
42
1.90
11906389--11906645
129
2.0
123
85
5
336
21
17
19
40
1.91
11909460--11909543
35
2.4
35
82
9
100
14
11
32
41
1.82
11915920--11916009
42
2.1
41
82
8
101
23
32
31
13
1.93
11921295--11921320
6
4.3
6
100
0
52
50
0
0
50
1.00
11940923--11940951
2
14.5
2
100
0
58
51
0
0
48
1.00
11953762--11953942
45
4.1
44
77
11
174
34
24
16
23
1.95
11953762--11953942
90
2.0
88
85
6
240
34
24
16
23
1.95
11958594--11958652
2
29.5
2
100
0
118
50
0
0
49
1.00
11959157--11959380
82
2.7
82
92
0
358
25
20
27
26
1.99
11959157--11959380
123
1.8
123
89
0
349
25
20
27
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11959157--11959351
41
4.8
41
96
0
354
24
20
28
26
1.99
11963989--11964052
30
2.1
30
82
0
83
29
15
21
32
1.95
11966813--11966871
20
3.0
20
82
9
75
47
13
10
28
1.75
11966877--11966971
41
2.3
41
90
1
147
38
12
7
41
1.71
11966910--11966971
20
3.1
20
68
9
63
38
11
6
43
1.66
11966976--11967076
40
2.5
39
77
17
100
35
14
4
44
1.67
11967005--11967132
60
2.1
60
85
2
168
33
14
8
43
1.75
11966976--11967080
20
5.2
20
72
15
83
34
14
4
46
1.65
11967225--11967271
20
2.3
20
81
0
67
36
8
12
42
1.74
11967308--11967365
20
2.9
20
81
0
71
37
18
5
37
1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198