Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  178  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55807567--55807593
2
13.5
2
100
0
54
48
0
0
51
1.00
55817652--55817676
2
12.5
2
100
0
50
52
0
0
48
1.00
55824852--55824902
17
2.8
18
80
14
52
52
1
3
41
1.31
55833622--55833682
3
20.3
3
96
0
113
32
1
0
65
1.02
55838080--55838139
6
10.7
6
82
8
65
70
10
5
15
1.32
55838086--55838134
15
3.1
15
79
8
53
69
10
6
14
1.35
55838102--55838173
20
3.3
21
76
9
74
73
6
8
11
1.24
55838092--55838149
27
2.1
27
84
6
73
74
8
5
12
1.21
55838119--55838217
50
2.0
51
84
6
130
73
7
11
8
1.24
55840386--55840846
46
10.7
43
70
13
188
30
19
21
28
1.97
55840568--55840840
80
3.3
80
72
13
271
30
17
21
30
1.97
55840478--55840845
170
2.2
167
87
2
513
29
19
22
29
1.98
55840867--55841067
44
4.7
44
70
8
144
31
20
22
25
1.98
55840862--55841091
127
1.8
128
89
0
363
30
22
21
26
1.99
55842563--55842611
3
16.3
3
95
0
89
32
2
0
65
1.04
55842761--55842790
2
15.0
2
100
0
60
50
0
0
50
1.00
55847901--55847956
16
3.5
16
69
9
51
55
32
3
8
1.48
55855327--55855371
20
2.1
22
84
12
58
13
11
8
66
1.44
55862336--55862532
35
5.7
34
89
4
286
37
18
24
19
1.94
55862336--55862532
70
2.8
69
93
2
331
37
18
24
19
1.94
55862821--55862858
14
2.8
13
92
7
67
36
10
5
47
1.61
55867506--55867540
15
2.3
15
90
9
54
77
8
0
14
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55867505--55867542
8
4.9
8
84
15
53
76
7
0
15
1.01
55867545--55867612
29
2.3
29
87
5
93
27
23
8
39
1.84
55867868--55867912
10
4.6
10
77
5
56
66
0
33
0
0.92
55867875--55867917
14
2.9
15
83
16
54
62
0
37
0
0.95
55867984--55868025
12
3.8
12
84
9
54
57
0
42
0
0.99
55868852--55869025
18
9.8
18
80
10
198
31
15
10
42
1.81
55868844--55869025
35
5.1
36
80
6
203
31
14
10
42
1.80
55869298--55869328
14
2.2
14
100
0
62
45
0
6
48
1.28
55872554--55872605
15
3.5
15
73
19
54
25
19
7
48
1.75
55872566--55872609
4
11.5
4
80
9
56
25
20
4
50
1.67
55872546--55872609
30
2.1
30
97
0
119
25
20
7
46
1.77
55872546--55872603
11
5.5
11
71
24
54
25
20
8
44
1.80
55876390--55876425
13
2.7
13
91
4
54
16
19
5
58
1.58
55880070--55880111
17
2.6
17
81
7
52
85
4
9
0
0.72
55880070--55880110
11
3.9
11
87
3
50
85
4
9
0
0.73
55881484--55881521
16
2.5
15
87
12
51
76
7
2
13
1.11
55881521--55881600
29
2.8
29
83
9
110
31
21
5
42
1.74
55882077--55882127
20
2.5
20
81
6
59
74
9
13
1
1.15
55882260--55882323
15
4.5
14
80
9
58
84
0
9
6
0.78
55882289--55882330
8
5.9
7
89
10
59
88
0
0
11
0.53
55882296--55882331
8
4.6
8
96
3
65
88
0
0
11
0.50
55882712--55882753
21
2.0
20
90
4
66
35
14
9
40
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55882712--55882753
20
2.1
19
86
8
57
35
14
9
40
1.78
55882858--55883021
18
9.2
18
77
9
158
32
14
9
42
1.79
55882858--55883021
35
4.6
36
78
8
176
32
14
9
42
1.79
55884363--55884432
3
23.7
3
75
13
56
27
4
2
65
1.25
55887225--55887327
38
2.6
39
83
4
127
41
10
10
36
1.75
55887269--55887328
18
3.0
20
77
22
72
33
10
11
45
1.74
55887287--55887333
17
2.6
19
87
12
73
38
8
10
42
1.70
55887197--55887328
38
3.5
38
78
8
121
40
10
9
38
1.73
55887653--55887687
14
2.6
14
91
8
56
74
2
0
22
0.95
55887820--55887858
7
5.9
7
85
8
55
0
12
0
87
0.55
55888139--55888225
7
11.9
7
77
17
61
0
24
0
75
0.80
55888145--55888215
27
2.9
24
71
22
58
0
23
0
76
0.79
55888139--55888225
39
2.2
38
92
8
140
0
24
0
75
0.80
55888139--55888230
14
7.0
14
75
16
81
0
26
0
73
0.83
55888423--55888475
20
2.7
20
96
0
97
5
11
56
26
1.56
55888742--55888839
30
3.3
29
73
11
81
39
5
21
33
1.75
55892627--55893110
89
5.4
89
88
0
689
29
22
22
25
1.99
55892627--55893110
178
2.7
178
92
0
779
29
22
22
25
1.99
55893410--55893453
21
2.1
21
86
0
61
38
6
34
20
1.79
55893338--55894030
348
2.0
349
95
0
1237
32
16
22
28
1.95
55894000--55894107
45
2.4
44
85
1
135
29
22
21
26
1.99
55893997--55894157
44
3.6
44
82
4
162
31
19
22
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55895756--55895806
24
2.3
22
80
10
59
37
9
3
49
1.55
55896837--55896891
25
2.2
25
83
6
67
29
1
12
56
1.47
55904261--55904394
17
7.7
18
74
6
123
47
10
12
29
1.75
55904246--55904401
35
4.5
34
75
7
125
46
10
13
29
1.77
55904449--55904497
17
2.8
17
76
14
55
44
10
12
32
1.75
55904981--55905019
15
2.6
16
84
8
55
0
20
0
79
0.73
55905248--55905329
12
7.2
12
76
12
59
1
18
0
80
0.78
55905241--55905320
19
4.5
17
79
14
74
2
16
0
81
0.80
55905262--55905335
6
12.3
6
77
13
73
1
18
0
79
0.80
55905241--55905332
28
3.3
27
84
13
116
2
17
0
80
0.81
55905252--55905332
19
4.3
19
76
14
78
1
19
0
79
0.81
55905248--55905336
22
3.8
23
81
11
94
1
20
0
78
0.81
55905248--55905336
23
3.8
25
78
16
95
1
20
0
78
0.81
55905605--55905655
24
2.1
25
81
3
59
7
13
17
60
1.56
55905867--55905987
30
4.1
29
75
11
93
42
3
19
33
1.68
55905916--55905988
30
2.4
30
88
0
110
46
4
17
31
1.67
55906254--55907137
77
11.5
76
84
7
974
33
21
16
29
1.95
55906134--55907137
152
6.5
152
80
10
930
33
21
16
28
1.95
55906174--55907159
78
12.9
75
82
9
1002
33
21
16
28
1.95
55906767--55907159
73
5.2
73
85
5
430
35
20
16
27
1.94
55908019--55908076
27
2.1
27
81
6
64
0
12
6
81
0.88
55908033--55908086
11
4.4
12
82
15
58
0
7
11
81
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55908121--55908999
439
2.0
438
95
0
1598
23
24
19
31
1.98
55915811--55915945
17
7.7
18
80
6
161
46
10
12
30
1.75
55915811--55915945
35
3.9
35
82
1
173
46
10
12
30
1.75
55916004--55916052
17
2.8
17
79
14
64
44
10
14
30
1.78
55916004--55916060
17
3.3
17
78
4
60
40
8
12
38
1.74
55916537--55916582
12
3.4
13
83
16
58
0
17
0
82
0.67
55916539--55916573
10
3.9
9
85
14
54
0
20
0
80
0.72
55916536--55916584
13
3.7
13
76
15
55
0
20
0
79
0.73
55916651--55916682
16
2.0
16
93
0
55
6
28
43
21
1.77
55916826--55916901
6
12.5
6
87
6
64
7
17
0
75
1.04
55916835--55916881
12
3.9
12
97
0
85
12
17
0
70
1.17
55916835--55916881
18
2.6
18
96
0
85
12
17
0
70
1.17
55916815--55916905
12
7.7
12
82
11
50
6
19
0
73
1.05
55916875--55916904
15
2.0
15
100
0
60
0
20
0
80
0.72
55917498--55917575
30
2.6
29
74
6
84
46
3
17
32
1.67
55917567--55917601
17
2.1
17
88
0
52
14
0
8
77
0.99
55917571--55917602
9
3.8
9
88
12
50
12
0
6
81
0.87
55918499--55918536
20
1.9
20
84
10
51
28
10
2
57
1.45
55923361--55923400
17
2.3
18
87
8
57
70
17
2
10
1.27
55923363--55923401
18
2.2
17
86
4
51
71
17
2
7
1.21
55925364--55925396
5
6.4
5
96
3
57
78
0
18
3
0.87
55942941--55942983
22
1.9
23
86
13
63
6
20
2
69
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55945821--55945854
15
2.2
16
89
5
52
70
17
0
11
1.16
55945964--55946006
12
3.6
12
77
0
50
23
58
4
13
1.55
55945966--55946018
24
2.2
24
82
0
70
26
58
3
11
1.49
55946034--55946149
9
12.9
9
64
13
51
20
47
14
17
1.82
55946029--55946174
27
5.4
27
94
0
229
21
47
13
17
1.82
55946019--55946207
81
2.4
78
82
5
243
24
48
11
14
1.77
55947165--55947222
15
4.0
15
74
14
50
31
0
1
67
1.01
55954209--55954273
18
3.6
18
76
15
62
66
4
0
29
1.12
55954216--55954259
16
2.6
18
82
10
56
65
4
0
29
1.12
55960541--55960634
49
1.9
49
86
0
134
39
26
7
26
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198