Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 ID=Chr04-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62178258

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   

This is table  18  of  198  ( 23681 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5423192--5423238
21
2.3
20
82
10
60
31
8
10
48
1.68
5423223--5423262
19
2.2
18
86
4
53
37
7
7
47
1.60
5423435--5423480
18
2.6
18
85
0
65
39
10
2
47
1.51
5426321--5426367
15
3.1
15
81
0
67
68
2
0
29
1.02
5426353--5426442
36
2.5
36
77
13
96
54
11
0
34
1.36
5427023--5427089
25
2.7
25
78
15
77
29
0
1
68
0.98
5427075--5427108
16
2.1
16
89
10
52
41
2
0
55
1.15
5434982--5435045
17
3.6
17
70
15
58
29
14
10
45
1.78
5434974--5435044
36
2.0
36
94
0
124
28
14
12
45
1.81
5440062--5440106
17
2.6
17
92
0
72
31
13
8
46
1.74
5442349--5442389
15
2.6
16
79
20
50
58
0
0
41
0.98
5454509--5454568
14
4.3
13
74
17
50
53
10
3
33
1.51
5454490--5454563
29
2.5
30
86
4
96
52
9
4
33
1.53
5455568--5455635
29
2.4
29
73
11
68
54
4
4
36
1.41
5466672--5466741
31
2.3
30
83
9
90
52
12
4
30
1.58
5468922--5468974
22
2.5
22
81
3
54
54
3
0
41
1.18
5469386--5469414
8
3.8
8
90
9
51
55
0
0
44
0.99
5476501--5476595
50
1.9
50
88
0
145
41
12
16
29
1.86
5478954--5478988
3
11.7
3
87
0
52
0
40
0
60
0.97
5491887--5491939
26
2.0
26
100
0
106
33
15
7
43
1.74
5499681--5499837
48
3.2
48
85
3
199
36
28
12
23
1.91
5499691--5499923
53
4.6
53
83
5
220
34
28
14
23
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5504813--5504870
21
2.8
21
76
10
73
18
25
15
39
1.91
5504763--5504897
42
3.2
43
80
4
132
16
20
16
46
1.84
5507187--5507353
85
2.0
85
85
0
226
27
17
16
38
1.91
5511529--5511560
10
3.4
10
83
16
50
9
12
0
78
0.97
5511521--5511565
18
2.5
18
92
7
74
11
8
2
77
1.07
5512540--5512588
2
24.5
2
91
0
80
44
0
0
55
0.99
5520492--5520536
2
22.5
2
100
0
90
48
0
0
51
1.00
5520802--5520847
22
2.1
22
84
8
58
26
4
4
65
1.30
5520833--5520872
21
1.9
21
84
0
53
37
2
0
60
1.11
5521043--5521208
92
1.8
89
84
6
226
36
5
17
40
1.73
5521032--5521230
92
2.2
89
79
6
220
38
6
17
37
1.76
5521069--5521264
92
2.1
91
80
5
214
34
8
15
41
1.77
5523322--5523359
12
3.0
13
76
7
51
26
2
7
63
1.35
5523316--5523378
25
2.6
25
82
2
83
28
7
6
57
1.52
5531922--5531972
21
2.4
22
83
6
61
29
3
1
64
1.22
5534554--5534607
24
2.2
24
83
0
63
33
22
25
18
1.97
5534633--5534722
26
3.5
27
76
7
89
31
23
26
18
1.98
5539098--5539195
48
2.0
48
98
0
187
35
24
14
25
1.93
5545062--5545094
12
2.8
12
100
0
66
15
30
18
36
1.91
5548062--5548102
21
2.0
21
85
9
57
68
0
2
29
1.03
5548794--5548818
13
1.9
13
100
0
50
32
0
0
68
0.90
5555570--5555594
13
1.9
13
100
0
50
40
0
0
60
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5557676--5557876
41
4.9
41
88
3
271
20
22
29
26
1.99
5557676--5557876
82
2.5
82
90
1
305
20
22
29
26
1.99
5558740--5558812
33
2.2
33
90
0
110
16
4
46
32
1.66
5560619--5560644
2
13.0
2
100
0
52
50
0
0
50
1.00
5562975--5563074
50
2.0
51
94
2
175
34
12
4
50
1.58
5563916--5564129
91
2.4
91
86
1
286
39
15
14
30
1.88
5566769--5566823
2
27.5
2
100
0
110
50
0
0
49
1.00
5567192--5567333
41
3.5
40
90
2
212
37
2
0
59
1.14
5567192--5567333
40
3.5
39
87
6
194
37
2
0
59
1.14
5567254--5567309
29
1.9
29
89
7
87
37
1
1
58
1.19
5567192--5567332
9
14.2
9
72
16
68
36
2
0
60
1.14
5567696--5567727
12
2.7
12
100
0
64
62
0
0
37
0.95
5573608--5573651
21
2.1
21
86
0
61
47
0
0
52
1.00
5580693--5580725
14
2.3
15
90
10
52
3
12
0
84
0.72
5581374--5581435
31
2.0
31
96
0
115
30
25
16
27
1.96
5583870--5583991
40
3.1
39
95
4
217
22
20
9
46
1.80
5590198--5590303
53
2.0
54
94
1
187
38
25
17
17
1.92
5595217--5595364
4
37.8
4
69
23
52
68
0
31
0
0.95
5595227--5595307
29
2.7
31
79
17
84
70
0
28
1
0.95
5595217--5595362
10
13.8
11
71
21
82
68
0
30
0
0.95
5595689--5596322
307
2.0
312
88
4
951
50
7
10
31
1.64
5595716--5596267
156
3.5
152
76
13
534
51
6
10
30
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5598349--5598388
9
4.4
9
90
0
62
42
20
10
27
1.83
5598349--5598393
18
2.4
18
85
3
63
42
20
11
26
1.85
5598420--5598452
13
2.5
13
95
0
57
18
6
15
60
1.54
5601227--5601332
40
2.6
41
77
8
117
50
13
4
32
1.62
5601349--5601392
3
14.7
3
100
0
88
65
0
0
34
0.93
5601518--5601554
10
3.6
10
88
3
56
0
29
0
70
0.88
5602652--5602690
20
1.9
20
84
5
51
33
0
0
66
0.92
5604500--5604551
22
2.4
22
87
6
70
17
26
21
34
1.95
5617318--5617362
12
3.9
12
80
16
51
55
0
8
35
1.31
5617730--5618228
87
5.8
84
77
9
415
24
21
21
32
1.98
5617730--5618269
44
12.6
42
75
9
299
24
22
21
31
1.98
5617809--5618269
44
10.7
43
78
6
330
24
22
21
31
1.98
5617812--5618097
126
2.2
126
83
4
349
24
21
22
32
1.98
5617778--5618269
175
2.9
174
87
4
646
24
22
21
31
1.98
5617893--5618274
131
2.9
130
82
3
401
25
23
20
30
1.99
5618414--5618938
46
11.7
46
68
15
269
27
22
20
29
1.98
5618295--5618667
175
2.1
175
89
2
579
30
21
18
29
1.97
5618470--5618982
134
3.8
134
85
7
636
28
22
19
29
1.98
5618640--5618985
44
7.7
44
67
15
188
26
24
19
28
1.99
5618583--5618981
138
2.9
134
91
4
656
27
24
20
28
1.99
5618914--5619010
44
2.3
42
85
5
124
27
26
18
26
1.98
5620386--5620441
7
8.3
7
82
7
71
16
14
0
69
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5620386--5620441
20
2.8
20
86
0
85
16
14
0
69
1.19
5621364--5621476
40
2.8
40
76
11
124
12
10
5
71
1.29
5622130--5622185
25
2.1
28
77
12
64
55
7
16
21
1.64
5625401--5625425
2
12.5
2
100
0
50
48
0
0
52
1.00
5629606--5630023
86
4.9
84
76
5
245
30
20
17
32
1.96
5629847--5630142
86
3.5
85
78
3
263
32
21
17
28
1.96
5638915--5638955
18
2.2
19
86
4
57
73
0
17
9
1.09
5640264--5640317
26
2.1
26
89
3
83
55
1
5
37
1.34
5640265--5640330
26
2.5
26
82
5
78
56
1
4
37
1.29
5640538--5640583
22
2.1
22
84
8
58
63
0
4
32
1.14
5646988--5647017
15
2.0
15
100
0
60
73
0
0
26
0.84
5649656--5649681
3
8.7
3
100
0
52
30
0
0
69
0.89
5655542--5655580
21
1.9
20
89
5
60
41
7
23
28
1.82
5655789--5655852
9
7.1
9
73
18
53
32
1
0
65
1.02
5655789--5655854
18
3.7
18
84
6
71
34
1
0
63
1.04
5655818--5655887
27
2.6
27
75
4
79
44
0
1
54
1.09
5655858--5655894
19
2.0
19
89
5
58
40
0
5
54
1.24
5657101--5657481
168
2.2
170
82
5
450
32
14
14
39
1.86
5660753--5660963
109
1.9
109
96
0
386
24
20
14
40
1.90
5667660--5667698
19
2.0
20
90
5
62
51
5
5
38
1.46
5674061--5674181
33
3.4
33
70
16
116
28
11
18
42
1.85
5674057--5674204
74
2.0
74
98
0
287
27
12
19
40
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5676421--5676592
64
2.7
64
94
0
308
41
19
12
27
1.87
5680124--5680157
18
2.0
17
88
11
52
70
0
0
29
0.87
5683124--5683164
17
2.5
17
80
11
50
60
0
2
36
1.10
5683203--5683235
15
2.2
15
94
0
57
54
0
0
45
0.99
5691207--5691246
20
2.0
20
90
4
64
50
5
10
35
1.58
5691207--5691255
19
2.5
20
87
6
66
46
4
10
38
1.57
5691217--5691255
20
2.0
20
90
5
62
48
2
7
41
1.45
5691366--5691398
16
2.1
15
94
5
57
75
0
24
0
0.80
5692052--5692098
24
2.0
24
84
16
62
34
0
14
51
1.43
5693759--5693806
24
2.0
24
84
8
62
45
0
14
39
1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198