genome.fa.s10.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  100  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30520200--30520356	71	2.2	73	86	5	212	37	3	3	55	1.34
30521555--30521623	35	1.9	36	97	2	131	52	18	2	26	1.60
30523400--30523466	33	2.0	33	91	0	107	38	4	43	13	1.64
30526431--30526476	17	2.8	17	96	3	85	21	34	19	23	1.96
30530161--30530205	12	3.6	12	82	11	54	53	11	2	33	1.49
30530227--30530263	13	2.8	13	87	4	56	54	13	0	32	1.40
30531354--30531454	27	3.7	26	83	7	121	37	13	23	24	1.92
30534458--30534654	50	3.9	50	91	0	286	20	30	23	25	1.98
30538222--30538419	50	3.8	51	83	5	229	22	29	20	26	1.99
30538868--30538917	24	2.1	24	96	0	91	28	28	4	40	1.74
30541795--30541865	29	2.4	29	83	0	79	35	28	18	18	1.94
30546048--30546229	91	2.0	91	94	0	319	31	20	3	44	1.69
30559005--30559034	15	2.0	15	100	0	60	60	0	40	0	0.97
30569657--30569903	50	4.8	50	79	4	219	23	27	20	28	1.99
30574583--30574620	17	2.2	17	100	0	76	31	15	5	47	1.68
30590519--30590559	12	3.4	12	86	0	55	9	14	39	36	1.79
30591729--30591824	25	3.8	25	76	2	86	27	21	21	29	1.99
30593764--30593815	21	2.5	21	84	9	63	7	13	7	71	1.31
30594870--30594928	21	2.7	22	79	10	68	6	13	3	76	1.12
30598478--30598546	14	4.6	15	75	19	56	10	17	0	72	1.11
30598472--30598513	13	3.1	14	83	6	52	11	14	0	73	1.09
30598491--30598610	18	6.3	18	70	17	64	9	18	2	70	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30598472--30598557	31	2.9	30	79	19	76	11	19	0	68	1.20
30598470--30598629	63	2.6	61	73	18	134	10	20	1	67	1.29
30603008--30603109	41	2.5	41	87	3	134	28	24	18	28	1.98
30603510--30603567	2	30.0	2	73	13	50	48	3	3	44	1.36
30606437--30606527	45	2.0	45	93	0	155	31	24	17	26	1.97
30606536--30606717	51	3.6	51	81	3	217	31	29	16	23	1.96
30606531--30606715	101	1.8	101	88	5	284	31	28	16	23	1.96
30610779--30610805	6	4.5	6	100	0	54	33	51	0	14	1.43
30616298--30616600	27	11.3	27	85	3	315	44	20	17	17	1.86
30616307--30616600	81	3.6	81	86	1	358	44	20	17	17	1.87
30616762--30616846	27	3.2	26	85	5	89	16	24	22	36	1.94
30616775--30616852	26	3.0	26	88	3	111	16	24	23	35	1.95
30616963--30617038	30	2.6	30	87	4	111	23	22	23	30	1.99
30626770--30626800	16	2.0	15	93	6	53	32	0	29	38	1.57
30629266--30629430	45	3.7	44	83	6	188	16	20	17	44	1.86
30629268--30629392	46	2.7	46	88	1	180	16	21	15	46	1.84
30629398--30629569	45	3.8	45	82	3	211	25	20	17	36	1.94
30629397--30629610	90	2.4	91	80	5	247	24	19	17	38	1.93
30640881--30641072	27	7.1	27	82	3	190	23	15	19	41	1.89
30640881--30641072	81	2.4	81	82	5	244	23	15	19	41	1.89
30640881--30641072	54	3.6	54	82	1	224	23	15	19	41	1.89
30642013--30642042	15	2.1	14	93	6	51	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30642482--30642535	25	2.2	25	89	0	81	16	48	11	24	1.79
30645352--30648028	681	4.0	665	90	3	4208	29	19	15	35	1.93
30664234--30664359	40	3.2	40	83	1	155	30	19	22	27	1.97
30664249--30664371	39	3.1	39	84	1	147	28	20	21	29	1.98
30664214--30664370	79	2.0	80	83	2	201	30	19	22	26	1.98
30664432--30664707	153	1.8	151	82	4	358	32	17	22	28	1.96
30664585--30664668	40	2.1	40	84	4	107	34	16	22	26	1.95
30664595--30664893	154	1.9	155	83	2	386	31	14	23	30	1.94
30665030--30665093	28	2.3	28	78	8	67	18	0	26	54	1.44
30665055--30665107	21	2.5	21	78	6	54	18	0	28	52	1.46
30665251--30665301	21	2.5	21	80	3	59	19	0	35	45	1.51
30665275--30665349	7	10.9	7	70	18	50	25	1	28	45	1.62
30665837--30665882	18	2.6	18	92	0	74	6	39	19	34	1.78
30666211--30666241	14	2.2	14	100	0	62	54	0	12	32	1.38
30667623--30667693	9	7.9	9	78	6	72	46	18	1	33	1.58
30667752--30667844	9	10.0	9	80	6	105	44	22	1	32	1.60
30673524--30673706	43	4.3	43	81	3	210	27	16	24	31	1.97
30676507--30676565	11	5.4	11	75	0	55	37	45	3	13	1.60
30676507--30676569	22	2.9	22	85	0	90	38	42	3	15	1.63
30685061--30685114	28	1.9	28	92	0	90	29	25	27	16	1.97
30685293--30685340	22	2.2	22	84	0	60	47	14	14	22	1.81
30685359--30685537	32	5.6	32	72	0	133	38	22	21	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30685357--30685490	64	2.1	64	87	2	189	38	22	21	17	1.93
30685521--30685575	26	2.3	23	74	17	56	36	29	20	14	1.92
30685705--30685787	24	3.5	23	83	4	94	48	24	7	20	1.74
30685828--30686170	27	12.7	27	84	3	350	22	19	19	37	1.94
30685828--30686213	27	14.3	27	82	4	305	22	19	20	38	1.94
30687950--30688001	20	2.5	21	90	9	81	40	9	11	38	1.74
30699902--30700010	40	2.8	40	80	2	123	35	21	21	22	1.96
30699899--30700035	39	3.5	39	73	7	125	37	20	19	21	1.94
30700057--30700229	45	4.2	41	76	14	167	21	20	24	33	1.97
30700057--30700238	41	4.4	41	78	12	183	21	19	24	35	1.96
30700068--30700229	86	1.9	84	88	5	245	22	19	24	33	1.97
30703134--30703180	19	2.5	19	80	16	53	70	10	0	19	1.16
30703149--30703187	19	2.0	20	85	5	53	69	10	0	20	1.17
30705524--30705614	43	2.1	43	88	6	132	35	10	8	45	1.71
30705982--30706139	43	3.7	43	87	0	201	25	17	27	28	1.98
30706006--30706139	43	3.1	43	91	0	205	24	17	29	29	1.97
30706341--30706373	16	2.1	16	100	0	66	30	6	6	57	1.47
30706832--30706930	43	2.3	44	85	1	137	30	25	16	28	1.96
30712598--30712696	43	2.3	44	87	1	146	28	27	17	27	1.97
30714273--30714739	256	1.8	255	79	2	542	28	23	13	34	1.93
30719353--30719506	54	2.8	55	93	4	251	30	18	27	22	1.98
30724004--30724043	14	2.7	15	88	3	55	50	2	30	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30724153--30724364	115	1.8	116	86	5	313	33	18	16	32	1.93
30724360--30724438	41	1.9	41	97	0	149	25	24	20	30	1.98
30724936--30724970	17	2.1	17	100	0	70	42	11	5	40	1.65
30725485--30725575	40	2.3	41	83	11	109	21	26	15	36	1.93
30728400--30728428	9	3.2	9	100	0	58	44	0	34	20	1.52
30741651--30741684	3	11.3	3	93	0	59	32	2	0	64	1.08
30746688--30746724	18	2.1	18	89	0	56	35	0	5	59	1.20
30746741--30746802	20	3.2	19	77	8	54	35	3	4	56	1.37
30746730--30746790	27	2.2	28	83	11	74	42	1	3	52	1.27
30747069--30747128	27	2.2	27	81	3	66	33	1	0	65	1.03
30748511--30748537	6	4.5	6	100	0	54	44	18	0	37	1.50
30749063--30749199	50	2.7	50	84	2	177	35	25	13	25	1.93
30753679--30753810	50	2.6	50	87	0	192	32	16	25	25	1.96
30753771--30753828	24	2.4	24	80	8	64	36	13	24	25	1.92
30753746--30753883	73	1.9	74	80	4	163	34	17	25	23	1.96
30753695--30753924	123	1.9	124	88	2	356	33	17	24	24	1.96
30753680--30753932	25	10.2	24	71	12	163	33	17	24	24	1.96
30759843--30760037	82	2.4	81	78	7	198	28	23	23	24	2.00
30760977--30761081	25	4.2	25	75	11	92	31	21	23	22	1.98
30760962--30761092	50	2.6	49	79	11	133	33	21	23	21	1.97
30760988--30761093	25	4.2	24	74	11	88	33	20	23	22	1.98
30761077--30761129	24	2.2	25	77	16	58	33	15	22	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30761132--30761207	25	3.0	26	75	11	77	32	17	27	22	1.96
30770370--30770453	33	2.5	33	84	0	105	51	14	17	16	1.77
30785480--30785509	15	2.0	15	93	0	51	40	16	0	43	1.48
30785562--30785644	13	6.4	13	72	10	62	37	20	3	38	1.70
30787356--30787385	13	2.2	14	94	5	53	43	0	13	43	1.43
30798357--30798395	2	20.0	2	94	5	71	48	0	0	51	1.00
30798575--30798617	3	14.3	3	100	0	86	65	0	0	34	0.93
30800247--30800400	50	3.1	50	67	8	134	24	18	22	34	1.96
30800703--30801153	132	3.5	129	83	4	534	31	24	18	26	1.97
30800747--30801102	44	8.2	44	66	10	138	30	25	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202