genome.fa.s10.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  101  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30803164--30803276	52	2.2	52	93	0	190	21	27	26	24	1.99
30803164--30803299	52	2.6	52	87	2	139	22	28	25	24	1.99
30804026--30804261	40	5.9	40	79	4	219	36	19	25	18	1.94
30804140--30804241	20	5.1	20	64	17	68	38	22	27	11	1.89
30804066--30804261	80	2.5	80	84	1	250	36	19	26	17	1.94
30806417--30806468	3	17.3	3	95	0	95	63	0	1	34	1.06
30808079--30808232	50	3.1	50	66	8	134	24	22	22	31	1.99
30808550--30808968	132	3.2	131	85	3	517	29	24	17	27	1.97
30808550--30809027	132	3.7	128	82	6	498	29	25	18	26	1.98
30809000--30809159	86	1.8	88	84	10	222	23	24	26	25	2.00
30812064--30812117	25	2.2	25	86	6	74	59	5	14	20	1.55
30816421--30816451	2	16.0	2	93	6	55	48	0	0	51	1.00
30818645--30818761	52	2.2	52	95	0	207	20	29	24	25	1.99
30818645--30818780	52	2.6	52	90	2	184	21	29	24	25	1.99
30819550--30819745	40	4.9	40	77	8	202	37	17	25	19	1.94
30819503--30819745	80	3.0	80	77	3	231	37	18	25	19	1.94
30823164--30823197	17	2.0	17	94	0	59	58	8	11	20	1.59
30828521--30828568	25	1.9	25	83	8	62	75	0	18	6	1.01
30843727--30843751	13	1.9	13	100	0	50	60	0	0	40	0.97
30845250--30845279	8	3.8	8	95	0	51	40	13	10	36	1.78
30846154--30846384	114	2.0	114	100	0	462	34	20	8	35	1.84
30846722--30846785	25	2.5	26	85	5	78	34	18	23	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30850370--30850402	13	2.4	14	90	5	50	30	15	3	51	1.58
30852768--30852894	27	4.7	27	78	7	114	29	19	14	37	1.91
30852766--30852895	54	2.4	54	84	2	154	29	20	14	36	1.92
30854579--30854804	33	6.5	33	68	23	142	29	27	22	20	1.98
30854606--30854806	103	2.0	103	92	3	336	29	27	22	19	1.98
30861401--30861771	33	10.7	33	69	20	165	30	27	20	21	1.98
30861401--30861777	104	3.6	107	87	5	472	30	27	20	21	1.98
30861723--30861775	27	2.0	27	96	0	97	28	30	22	18	1.98
30863984--30864028	14	3.3	14	76	17	58	64	0	20	15	1.29
30863984--30864045	27	2.3	27	94	2	108	64	1	19	14	1.37
30868457--30868578	54	2.3	54	76	0	127	27	26	27	18	1.98
30877493--30877552	26	2.3	26	97	0	111	25	26	11	36	1.90
30886307--30886358	26	2.0	26	92	0	86	21	23	21	34	1.97
30888712--30888746	9	3.9	9	100	0	70	34	0	22	42	1.54
30888767--30888833	35	1.9	35	93	0	116	37	5	10	46	1.63
30888766--30888845	35	2.4	32	82	13	108	36	6	8	48	1.59
30888834--30888860	13	2.1	13	100	0	54	37	11	0	51	1.37
30889386--30889431	22	2.0	23	83	4	58	67	4	2	26	1.21
30889386--30889431	23	2.0	22	83	4	56	67	4	2	26	1.21
30891686--30891726	21	2.0	21	90	0	64	58	7	2	31	1.38
30893116--30893240	48	2.6	48	85	0	178	44	9	28	17	1.80
30893314--30893409	41	2.3	41	83	0	111	15	23	19	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30894163--30894208	24	1.9	24	82	8	58	8	28	6	56	1.54
30900338--30900368	9	3.4	9	95	0	53	93	0	6	0	0.35
30905276--30905313	20	1.9	20	94	0	67	36	2	0	60	1.11
30915587--30915657	26	2.7	26	84	0	97	21	16	21	40	1.91
30920089--30920216	64	2.0	64	98	0	247	41	17	8	32	1.80
30921270--30921502	40	6.1	36	75	12	137	34	28	19	17	1.94
30921321--30921546	40	5.7	40	86	1	285	36	28	19	15	1.93
30921274--30921546	120	2.3	116	83	3	325	36	28	18	16	1.93
30923772--30923825	25	2.2	25	100	0	108	35	24	18	22	1.96
30929162--30929293	50	2.6	50	85	3	176	24	18	26	30	1.98
30929158--30929333	51	3.5	50	79	4	201	23	16	28	31	1.96
30929350--30929444	45	2.1	45	90	0	154	26	16	23	33	1.96
30931621--30931667	10	4.5	10	84	15	60	85	0	12	2	0.70
30931621--30931667	7	6.7	7	88	11	62	85	0	12	2	0.70
30931625--30931667	8	5.4	8	81	10	52	86	0	11	2	0.67
30934800--30934931	51	2.6	50	83	4	158	25	17	25	32	1.97
30934747--30934931	101	1.8	102	88	5	286	24	16	25	32	1.96
30935348--30935576	51	4.5	51	80	5	230	25	16	27	30	1.96
30935348--30935574	101	2.2	102	83	3	289	25	15	27	30	1.96
30935492--30935572	26	3.2	26	65	28	73	22	14	29	33	1.94
30935796--30935827	16	2.0	16	93	0	55	59	0	15	25	1.36
30941493--30941634	51	2.8	50	77	7	144	24	19	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30943284--30943470	51	3.7	51	83	7	213	20	16	29	33	1.94
30943286--30943470	101	1.8	102	86	8	270	20	16	29	33	1.94
30943476--30943570	45	2.1	45	90	0	154	26	17	24	31	1.97
30959042--30959216	74	2.3	74	81	3	199	32	24	20	22	1.98
30962281--30962407	41	3.1	41	83	0	155	21	18	30	29	1.97
30963068--30963105	16	2.5	15	87	8	51	26	2	28	42	1.69
30965721--30965787	35	2.0	35	82	11	86	28	11	14	44	1.81
30966166--30966195	3	10.0	3	100	0	60	33	0	0	66	0.92
30969175--30969305	41	3.2	41	97	0	244	34	16	17	31	1.93
30971350--30971506	43	3.7	43	92	0	244	23	19	29	27	1.98
30971350--30971506	85	1.8	86	91	1	235	23	19	29	27	1.98
30976195--30976288	25	3.8	25	74	5	91	26	22	22	28	1.99
30977878--30978053	27	6.4	27	76	13	146	34	13	22	30	1.92
30977878--30978026	55	2.7	55	86	3	210	34	13	20	31	1.91
30978041--30978114	27	2.8	24	75	18	67	31	17	27	24	1.97
30978222--30978292	27	2.6	27	79	0	70	42	8	23	25	1.82
30980172--30980210	20	2.0	20	90	10	62	15	23	5	56	1.59
30980413--30980598	50	3.7	50	81	6	209	23	27	21	27	1.99
30988119--30988307	50	3.7	50	82	4	198	23	29	21	25	1.99
30988771--30988868	46	2.1	46	92	1	160	45	7	2	44	1.42
30991412--30991662	43	5.9	43	87	0	360	24	19	30	25	1.98
30991412--30991662	128	2.0	128	88	4	380	24	19	30	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30991412--30991662	85	2.9	86	87	0	360	24	19	30	25	1.98
30999603--30999666	22	2.9	22	78	0	74	35	6	34	23	1.80
31000741--31000782	10	4.3	10	78	6	50	28	11	23	35	1.91
31002388--31002459	19	3.7	20	76	10	69	5	16	2	75	1.12
31004638--31004674	19	2.1	18	90	10	58	21	8	0	70	1.13
31004993--31005052	22	2.7	22	78	0	66	38	5	31	25	1.77
31014426--31014856	217	2.0	217	97	0	817	34	8	21	35	1.83
31015230--31015309	25	3.2	25	84	8	101	22	26	22	28	1.99
31015241--31015327	25	3.5	24	80	10	79	24	24	24	27	2.00
31018573--31018683	54	2.1	54	91	0	177	25	12	22	39	1.89
31021422--31021508	42	2.1	42	93	0	147	45	13	12	27	1.80
31022903--31023017	25	4.6	25	80	3	101	27	26	20	26	1.99
31032330--31032451	41	3.0	41	81	0	136	32	17	28	21	1.96
31040424--31040517	47	2.0	47	95	4	172	36	25	5	32	1.79
31042390--31042435	22	2.1	22	95	0	83	23	30	4	41	1.74
31048780--31048817	20	1.9	20	84	10	51	42	18	28	10	1.83
31053778--31053815	18	2.1	18	90	0	58	76	2	18	2	1.02
31078084--31078137	28	2.0	28	85	3	74	38	16	11	33	1.84
31083603--31083886	50	5.7	50	81	4	288	22	28	21	28	1.99
31083663--31083875	100	2.1	100	89	1	320	21	29	22	27	1.99
31090041--31090278	50	4.6	50	82	5	244	22	28	22	26	1.99
31098240--31098325	25	3.5	24	85	6	109	32	17	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31098318--31098375	25	2.3	25	85	11	75	41	25	12	20	1.87
31098232--31098350	50	2.4	50	80	5	125	35	21	18	25	1.95
31108430--31108500	20	3.5	19	68	11	52	39	5	15	39	1.71
31110688--31111008	22	14.6	22	81	0	354	43	16	10	29	1.81
31110679--31111008	44	7.5	44	84	0	390	43	16	10	29	1.81
31110910--31111008	11	9.0	11	68	16	62	45	18	7	29	1.75
31111838--31111994	43	3.7	43	89	3	219	29	26	18	24	1.98
31118310--31118491	27	6.8	27	80	9	194	41	18	19	20	1.90
31118661--31118732	26	2.8	26	89	0	108	13	23	25	37	1.92
31118842--31118925	30	2.9	28	81	6	105	27	25	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202