genome.fa.s10.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  107  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32753344--32753400	27	2.1	26	84	12	71	38	14	3	43	1.62
32756274--32756320	20	2.3	20	85	7	60	27	27	19	25	1.99
32759113--32759174	27	2.3	27	83	5	72	79	1	16	3	0.95
32759124--32759184	16	4.2	14	74	19	54	73	1	19	4	1.10
32759142--32759184	12	3.3	13	81	18	54	76	0	18	4	0.95
32760224--32760266	15	2.9	14	83	10	59	69	2	13	13	1.28
32760296--32760371	12	6.3	12	68	17	50	63	1	23	11	1.36
32760297--32760337	21	1.9	22	90	5	66	70	0	19	9	1.14
32761891--32761932	7	5.9	7	81	15	50	83	2	0	14	0.75
32761900--32761933	14	2.4	14	100	0	68	85	0	0	14	0.60
32761891--32761932	22	1.9	22	90	9	68	83	2	0	14	0.75
32765637--32765681	20	2.3	19	84	7	54	31	11	33	24	1.90
32765815--32765872	10	5.7	10	76	11	64	29	27	13	29	1.94
32765815--32765875	20	3.0	20	83	9	79	27	26	13	32	1.93
32767718--32767764	20	2.3	20	85	7	60	27	29	17	25	1.97
32770464--32770527	30	2.1	30	85	5	85	21	18	18	40	1.91
32777013--32777123	23	4.9	23	76	2	116	36	27	5	30	1.79
32777026--32777111	45	1.9	45	95	0	154	37	29	4	29	1.77
32785174--32785198	4	6.2	4	100	0	50	24	0	0	76	0.80
32786758--32786826	22	3.1	22	93	0	111	26	26	17	30	1.97
32796971--32797033	25	2.5	25	78	14	67	34	22	20	22	1.96
32796924--32797033	50	2.2	50	85	3	141	31	20	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32798264--32798400	46	3.0	46	98	0	265	24	21	21	33	1.97
32798784--32798822	15	2.5	15	91	4	60	64	5	12	17	1.46
32800251--32800352	29	3.5	29	97	0	186	45	13	9	31	1.76
32805771--32805813	16	2.7	16	100	0	86	13	11	0	74	1.07
32805794--32805849	12	4.9	11	78	10	60	14	8	3	73	1.21
32805794--32805834	21	1.9	22	90	5	66	9	7	4	78	1.10
32808562--32808633	29	2.5	29	93	2	119	45	13	9	30	1.76
32830187--32830280	46	2.0	46	95	0	170	23	19	22	35	1.96
32832306--32832346	20	2.0	20	86	9	57	58	2	4	34	1.32
32836621--32836700	22	3.6	22	86	0	115	31	12	26	30	1.93
32837145--32837214	31	2.2	32	82	9	83	24	28	14	32	1.94
32842867--32842900	12	2.8	12	90	0	50	8	17	0	73	1.08
32842848--32842894	18	2.9	16	84	12	60	6	21	0	72	1.07
32843881--32843911	12	2.6	12	100	0	62	12	6	6	74	1.21
32846256--32846302	20	2.3	20	85	7	60	25	17	29	27	1.97
32851181--32851222	18	2.3	18	87	0	57	73	2	16	7	1.15
32853231--32853300	31	2.2	32	82	9	83	25	28	12	32	1.93
32856774--32856834	10	6.1	10	74	12	54	32	13	24	29	1.93
32856775--32856835	20	3.0	20	83	9	79	32	13	26	27	1.93
32856779--32856855	30	2.5	30	81	6	84	29	15	29	24	1.96
32861772--32861829	16	3.4	16	84	13	71	17	12	10	60	1.58
32861771--32861830	17	3.5	16	85	14	84	16	11	10	61	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32861770--32861830	19	3.4	18	86	11	90	16	11	9	62	1.54
32861771--32861841	19	4.0	17	85	10	72	21	14	9	54	1.68
32863081--32863118	20	1.9	20	94	0	67	28	15	28	26	1.96
32873676--32873736	10	6.1	10	74	12	54	32	13	24	29	1.93
32873677--32873737	20	3.0	20	83	9	79	32	13	26	27	1.93
32873681--32873756	30	2.5	30	82	6	82	28	15	30	25	1.96
32882720--32882780	10	6.1	10	74	12	54	32	13	24	29	1.93
32882721--32882781	20	3.0	20	83	9	79	32	13	26	27	1.93
32882725--32882801	30	2.5	30	81	6	84	29	15	29	24	1.96
32886851--32886904	20	2.7	20	85	0	72	27	12	35	24	1.92
32890139--32890180	22	2.0	21	90	4	66	54	11	0	33	1.37
32892023--32892080	15	4.1	15	75	20	61	6	18	0	74	1.04
32892033--32892083	12	4.1	12	76	23	52	3	17	0	78	0.90
32892023--32892090	27	2.5	27	79	9	68	7	20	0	72	1.09
32892064--32892097	12	2.8	12	90	4	50	11	20	0	67	1.21
32893236--32893275	8	4.9	8	87	6	62	12	0	2	85	0.71
32907645--32907701	23	2.5	23	85	5	71	59	10	3	26	1.46
32916389--32916435	24	2.0	24	100	0	94	19	8	25	46	1.77
32920206--32920251	15	3.2	15	71	22	53	23	8	17	50	1.74
32920206--32920259	28	1.9	28	88	7	83	25	9	16	48	1.76
32922828--32923062	70	3.3	70	89	4	341	26	22	25	25	2.00
32922834--32923021	35	5.4	35	69	8	123	27	23	25	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32923834--32923889	18	3.4	18	65	34	54	53	8	8	28	1.62
32923829--32923889	30	2.0	30	100	0	122	49	9	11	29	1.71
32924057--32924118	25	2.3	26	78	13	65	48	9	1	40	1.46
32933466--32933663	98	2.0	98	92	0	324	50	17	14	18	1.79
32939014--32939038	13	1.9	13	100	0	50	32	0	0	68	0.90
32939683--32940108	126	3.4	126	89	1	626	30	18	22	28	1.97
32940710--32941052	43	8.0	44	86	4	459	21	0	31	46	1.56
32940712--32941052	65	5.3	64	91	3	465	21	0	31	46	1.56
32940710--32941052	22	16.0	22	85	3	459	21	0	31	46	1.56
32941055--32941097	14	3.0	14	83	10	52	23	0	37	39	1.55
32941638--32941680	18	2.4	18	84	0	59	46	9	27	16	1.77
32942332--32942360	7	4.1	7	100	0	58	55	17	0	27	1.42
32942529--32942566	20	1.9	20	84	10	51	55	7	2	34	1.43
32943379--32943414	18	2.0	18	100	0	72	16	22	11	50	1.77
32944533--32944572	5	8.0	5	94	0	53	32	0	5	62	1.17
32952520--32952687	27	6.2	26	82	4	158	20	16	20	42	1.89
32952520--32952687	54	3.1	53	84	3	194	20	16	20	42	1.89
32952522--32952679	81	1.9	82	84	6	214	20	15	22	41	1.90
32955225--32955362	27	5.1	27	86	0	168	18	16	23	42	1.89
32955210--32955339	54	2.4	54	85	2	145	20	17	21	40	1.92
32955225--32955361	54	2.5	54	85	3	186	18	16	23	41	1.90
32960989--32961079	44	2.1	44	100	0	182	20	13	8	57	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32962092--32962324	45	5.2	45	95	0	403	25	20	15	38	1.92
32964429--32964498	31	2.3	31	82	9	81	32	12	28	25	1.93
32965012--32965080	33	2.2	32	94	5	122	39	26	11	23	1.88
32971842--32971879	17	2.4	17	91	8	62	55	0	13	31	1.38
32982002--32982174	29	6.0	28	85	6	211	37	13	28	20	1.90
32981996--32982173	58	3.1	57	85	4	239	37	13	28	20	1.91
32982002--32982172	88	2.0	87	88	1	252	37	12	29	20	1.90
32990574--32990636	21	3.0	21	88	2	90	30	3	33	33	1.74
32996888--32996950	22	2.9	22	92	0	99	23	25	15	34	1.95
32997555--32997599	20	2.2	20	84	7	56	53	11	4	31	1.56
33003057--33003148	29	3.2	28	83	6	103	38	11	21	28	1.89
33005381--33005412	13	2.4	14	85	15	50	62	12	0	25	1.30
33005391--33005518	39	3.4	38	83	8	154	51	11	7	28	1.66
33007928--33008058	50	2.6	50	87	4	183	20	31	24	23	1.98
33016309--33016463	78	2.0	78	93	2	267	38	14	11	34	1.83
33017296--33017509	29	7.3	29	76	7	137	22	26	12	39	1.89
33017296--33017509	58	3.7	58	80	11	222	22	26	12	39	1.89
33020371--33020452	42	2.0	42	85	4	112	30	24	14	30	1.95
33022992--33023035	23	1.9	22	82	17	54	36	25	0	38	1.56
33023082--33023173	45	2.0	45	91	0	148	32	23	17	26	1.97
33023179--33023365	51	3.7	50	78	4	205	30	26	17	25	1.97
33023177--33023361	101	1.8	101	88	3	282	30	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33028021--33028201	92	2.0	93	86	1	256	35	14	7	42	1.74
33039383--33039439	29	2.0	29	89	0	87	14	17	38	29	1.89
33051357--33051407	6	8.5	6	86	0	57	13	23	3	58	1.52
33055643--33055761	59	2.0	59	98	0	229	41	23	17	17	1.90
33058538--33058620	41	2.0	41	93	4	141	33	7	18	40	1.78
33061702--33061835	43	3.0	44	84	6	180	31	8	13	47	1.72
33062067--33062092	10	2.6	10	100	0	52	23	0	7	69	1.14
33062178--33062210	10	3.4	10	87	8	50	30	0	0	69	0.88
33109785--33109830	18	2.6	18	77	19	51	10	6	10	71	1.30
33116275--33116325	26	2.0	26	84	0	66	15	23	33	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202