genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  120  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37185758--37185802	9	4.7	9	91	8	63	57	22	0	20	1.40
37185758--37185802	20	2.3	19	88	11	65	57	22	0	20	1.40
37185885--37185970	40	2.2	40	97	0	163	48	13	8	29	1.71
37185924--37186064	70	2.0	70	91	0	228	46	10	11	31	1.74
37190209--37190272	21	2.9	21	78	13	74	32	15	12	39	1.85
37190188--37190269	24	3.6	23	77	9	78	32	10	13	42	1.79
37190372--37190404	11	3.2	11	83	16	52	57	18	0	24	1.40
37190372--37190407	10	3.6	10	88	11	56	55	22	0	22	1.44
37190490--37190577	40	2.2	40	93	0	158	47	13	9	29	1.74
37190529--37190669	70	2.0	70	90	0	219	44	12	12	30	1.79
37205006--37205047	22	2.0	21	85	4	57	19	28	9	42	1.82
37207627--37207663	18	2.0	19	89	5	58	75	2	16	5	1.10
37213142--37213184	20	2.2	20	86	0	59	53	2	30	13	1.53
37225878--37225935	30	1.9	30	82	6	73	34	12	36	17	1.87
37233381--37233565	91	2.0	91	100	0	370	20	29	16	32	1.95
37245015--37245147	49	2.7	49	94	0	230	24	24	18	33	1.97
37245013--37245308	49	5.8	50	83	3	213	22	27	19	30	1.98
37245119--37245308	50	3.7	50	82	4	173	22	30	20	27	1.98
37249156--37249184	8	3.6	8	100	0	58	75	0	0	24	0.80
37249973--37250008	15	2.4	15	95	0	63	27	25	22	25	2.00
37258482--37258528	21	2.2	22	84	3	60	27	8	12	51	1.69
37264787--37264826	20	2.0	20	85	9	55	32	30	10	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37264862--37264983	54	2.3	54	91	0	190	32	10	15	40	1.82
37264936--37264973	19	2.0	19	94	0	67	28	10	10	50	1.70
37266734--37266772	17	2.3	17	91	8	62	43	23	17	15	1.87
37267130--37267172	18	2.4	18	88	7	61	67	2	16	13	1.33
37268864--37268991	54	2.4	54	83	8	163	30	11	13	44	1.79
37268886--37268974	19	4.8	19	68	22	64	29	13	11	46	1.78
37269082--37269118	10	3.9	9	89	10	56	21	0	21	56	1.42
37269082--37269118	19	1.9	19	94	0	65	21	0	21	56	1.42
37280601--37280645	21	2.1	21	84	8	56	62	4	2	31	1.27
37282171--37282200	11	2.7	11	89	0	51	30	0	0	70	0.88
37282652--37282728	38	2.0	39	89	2	120	32	11	10	45	1.75
37293736--37293804	33	2.1	33	100	0	138	36	14	8	40	1.77
37294238--37294275	14	2.7	14	91	0	58	18	13	5	63	1.48
37295629--37295668	20	2.0	21	90	5	64	50	5	22	22	1.68
37297935--37298021	43	2.0	43	100	0	174	20	22	24	32	1.98
37306033--37306133	50	2.1	47	90	5	157	30	2	10	55	1.49
37310708--37310750	22	2.0	21	86	4	59	34	0	9	55	1.32
37313146--37313218	12	6.5	12	72	16	50	68	1	20	9	1.25
37313159--37313214	21	2.7	21	75	8	60	69	0	21	8	1.15
37318154--37318195	16	2.6	16	88	7	59	30	11	30	26	1.92
37319237--37319282	13	3.5	13	88	5	58	63	6	6	23	1.43
37327452--37327551	33	3.1	33	79	12	100	13	25	6	56	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37327571--37327613	21	2.0	22	90	4	70	11	20	0	67	1.22
37327549--37327620	33	2.2	33	89	0	108	12	18	0	69	1.19
37335500--37335526	13	2.1	13	100	0	54	33	0	7	59	1.25
37336761--37336830	20	3.3	20	65	27	54	48	11	7	32	1.66
37336761--37336852	44	2.1	44	95	0	166	50	13	8	28	1.70
37338389--37338430	16	2.6	16	92	0	66	28	11	30	28	1.92
37339916--37340119	92	2.2	91	81	5	241	33	18	17	30	1.94
37341360--37341389	15	2.0	15	100	0	60	60	0	20	20	1.37
37344232--37344323	39	2.4	38	88	1	139	36	9	11	41	1.75
37344232--37344379	39	3.8	38	80	11	104	34	9	12	43	1.75
37354621--37354687	6	11.7	6	84	9	95	68	0	16	14	1.21
37358691--37358729	18	2.2	18	90	9	62	5	20	2	71	1.17
37360386--37360441	30	1.9	28	82	13	69	60	10	14	14	1.58
37361943--37361991	24	2.0	24	100	0	98	38	16	28	16	1.90
37365211--37365270	30	2.0	31	83	9	79	53	11	6	28	1.62
37371624--37371690	33	2.0	34	85	8	93	58	4	23	13	1.54
37379365--37379426	18	3.3	18	80	8	79	66	3	22	8	1.33
37379374--37379426	20	2.8	18	81	10	70	64	3	24	7	1.37
37381956--37382053	39	2.5	39	88	1	135	42	11	9	36	1.73
37387915--37387974	18	3.3	18	70	11	50	15	25	0	60	1.35
37390742--37390791	24	2.0	24	84	3	64	34	4	38	24	1.74
37392912--37392997	43	2.0	42	86	2	118	24	19	23	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37394235--37394268	12	2.8	12	86	0	50	55	17	5	20	1.62
37396464--37396523	28	2.1	29	90	3	95	31	23	23	21	1.98
37396629--37396725	26	3.8	25	79	4	122	30	25	23	19	1.98
37396907--37397067	27	5.9	28	83	5	118	20	18	19	42	1.90
37396927--37397067	27	5.2	27	84	10	173	20	19	17	42	1.89
37404329--37404431	41	2.4	43	83	4	138	33	24	17	25	1.96
37405315--37405370	28	2.0	28	86	6	78	48	3	1	46	1.30
37412550--37413203	114	5.9	114	79	8	666	27	22	24	25	2.00
37413439--37413521	38	2.3	36	83	10	98	19	3	37	39	1.69
37413418--37413529	7	15.4	7	68	18	52	18	2	37	41	1.65
37414275--37414336	32	2.0	32	90	3	99	53	8	0	38	1.31
37414567--37414639	16	4.7	16	83	11	89	17	0	45	36	1.49
37414567--37414638	7	9.2	8	76	14	62	16	0	45	37	1.48
37417119--37417218	25	4.0	25	74	11	87	48	20	0	32	1.50
37417123--37417222	50	2.0	49	94	1	173	48	19	0	33	1.49
37419126--37419196	21	3.4	21	94	0	115	30	15	47	5	1.68
37419539--37419762	43	5.2	42	85	6	279	30	19	24	25	1.98
37419984--37420111	41	3.0	43	77	6	145	30	26	17	25	1.98
37420989--37421042	26	2.1	26	86	6	74	48	3	1	46	1.30
37435083--37435196	42	2.7	42	88	1	165	45	21	17	15	1.85
37435093--37435220	20	5.9	22	66	13	59	46	21	15	17	1.84
37435083--37435183	20	4.8	20	70	9	67	43	21	19	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37438863--37438898	18	2.1	18	89	5	56	22	25	0	52	1.47
37441321--37441421	52	1.9	52	93	0	175	33	21	17	26	1.96
37447765--37447865	52	1.9	52	89	0	157	33	19	18	27	1.96
37450942--37451038	25	3.9	25	76	0	104	26	21	20	30	1.98
37459740--37459792	27	2.0	27	84	0	70	41	18	18	20	1.91
37474148--37474207	28	2.1	28	90	6	95	50	8	3	38	1.49
37476583--37476634	26	2.0	26	100	0	104	46	15	11	26	1.80
37476790--37476829	21	1.9	21	90	10	64	22	10	12	55	1.67
37477112--37477180	19	3.8	18	72	11	52	39	2	0	57	1.13
37477145--37477182	18	2.1	19	90	5	60	44	0	0	55	0.99
37477197--37477256	20	3.2	19	81	9	70	36	1	5	56	1.31
37482808--37482836	15	2.0	15	93	6	51	82	6	0	10	0.83
37482812--37482854	21	2.0	22	79	20	56	79	9	0	11	0.95
37482822--37482854	11	3.1	11	86	8	50	78	9	0	12	0.95
37482920--37483195	68	4.1	68	87	2	378	23	20	18	38	1.94
37499436--37499981	275	2.0	275	94	0	950	25	17	23	33	1.96
37511208--37511317	50	2.2	51	90	3	186	43	6	24	25	1.77
37513749--37514173	51	8.4	50	77	5	358	29	15	25	28	1.96
37513732--37514177	102	4.4	102	89	3	616	29	15	25	29	1.96
37520704--37520844	39	3.6	39	92	3	230	31	4	19	44	1.70
37528762--37528800	18	2.2	17	86	13	53	33	0	20	46	1.51
37530290--37530411	23	5.3	23	78	3	147	22	20	24	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37530290--37530411	46	2.7	46	86	0	172	22	20	24	32	1.98
37539315--37539405	27	3.3	26	77	6	92	39	21	16	21	1.92
37539768--37539884	28	4.2	28	81	1	128	23	20	22	33	1.97
37545811--37545845	3	11.7	3	93	0	61	71	28	0	0	0.86
37547931--37547977	22	2.1	22	84	0	58	46	17	17	19	1.84
37547969--37548171	32	6.4	32	83	2	248	37	21	21	19	1.94
37547969--37548171	96	2.1	96	91	0	327	37	21	21	19	1.94
37548162--37548218	26	2.2	26	87	0	78	31	31	22	14	1.93
37548215--37548281	27	2.5	26	79	13	75	32	17	23	25	1.97
37548343--37548424	24	3.5	23	80	5	83	48	21	4	24	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202