genome.fa.s10.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  164  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51375803--51376161	44	8.2	44	87	2	425	26	24	19	29	1.99
51375803--51376161	132	2.7	132	84	0	484	26	24	19	29	1.99
51377234--51377326	42	2.2	42	92	0	159	27	34	11	25	1.91
51389961--51390003	22	2.0	22	95	0	77	18	9	32	39	1.83
51396787--51396823	18	2.0	19	89	5	58	54	2	5	37	1.38
51405271--51405313	20	2.1	20	86	4	59	72	4	11	11	1.27
51406408--51406436	14	2.0	15	93	6	51	13	10	0	75	1.04
51408366--51408669	24	12.7	24	79	2	279	17	9	38	34	1.82
51408439--51408670	119	1.9	120	84	2	306	18	9	37	34	1.83
51408346--51408669	72	4.5	71	80	4	335	18	8	37	34	1.82
51409298--51409370	23	3.2	23	71	7	67	23	20	17	38	1.93
51409290--51409411	46	2.7	46	77	0	127	24	20	14	40	1.90
51415907--51416075	41	4.1	41	78	8	155	27	25	18	27	1.98
51417438--51417463	13	2.0	13	100	0	52	61	23	0	15	1.33
51425000--51425061	29	2.1	29	82	5	72	43	17	19	19	1.88
51428820--51428893	22	3.4	22	83	3	96	25	18	20	35	1.96
51443367--51443476	3	36.3	3	85	8	143	72	0	27	0	0.85
51443367--51443481	33	3.6	33	93	6	186	73	0	26	0	0.83
51443753--51443851	47	2.1	47	86	0	144	28	5	21	45	1.72
51443759--51443881	47	2.7	44	79	9	131	29	5	23	41	1.77
51443753--51443889	47	3.0	45	81	11	129	27	5	24	43	1.75
51447622--51447993	105	3.6	105	94	1	617	30	30	20	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51451328--51451369	17	2.5	17	88	7	59	16	7	2	73	1.15
51451845--51451886	21	2.0	21	85	0	57	11	14	40	33	1.82
51458299--51458329	15	2.1	15	100	0	62	51	6	16	25	1.68
51462074--51462101	9	3.1	9	100	0	56	57	10	0	32	1.33
51462044--51462253	68	3.1	68	97	1	397	46	9	4	40	1.57
51462142--51462169	9	3.1	9	100	0	56	57	10	0	32	1.33
51462246--51462283	16	2.4	16	90	0	58	42	7	2	47	1.46
51462257--51462312	23	2.5	23	82	2	69	44	1	1	51	1.22
51465159--51465216	27	2.2	27	79	11	66	34	1	5	58	1.30
51477406--51477458	3	17.7	3	100	0	106	32	0	0	67	0.91
51484320--51484436	37	3.0	40	77	8	123	35	21	16	27	1.94
51484978--51485013	18	1.9	19	88	5	56	33	27	0	38	1.57
51485295--51485345	26	2.0	26	84	7	68	1	23	3	70	1.14
51485361--51485439	27	2.8	31	74	20	82	48	2	2	46	1.29
51493897--51494016	60	2.0	60	96	0	222	43	16	19	20	1.88
51495887--51495915	14	2.1	14	93	6	51	51	24	0	24	1.48
51496544--51496665	44	2.8	44	79	2	156	36	25	17	20	1.94
51497393--51497454	21	3.0	21	100	0	124	62	14	12	9	1.53
51497738--51497764	12	2.2	12	100	0	54	62	14	0	22	1.31
51501595--51501637	17	2.5	17	85	11	52	46	4	11	37	1.61
51523954--51524002	26	1.9	26	83	4	64	46	10	6	36	1.63
51533223--51533346	35	3.4	35	70	18	108	36	21	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51533167--51533348	75	2.5	74	88	2	276	33	22	20	23	1.97
51533178--51533305	40	3.4	38	71	18	122	35	19	19	25	1.95
51533323--51533402	34	2.3	34	78	2	88	33	25	22	18	1.97
51535833--51535893	25	2.4	26	83	8	81	19	29	18	32	1.95
51535883--51535937	25	2.2	25	78	9	60	23	20	21	34	1.97
51537979--51538018	2	20.0	2	100	0	80	50	0	0	50	1.00
51542789--51543259	236	2.0	230	87	3	665	30	13	23	32	1.93
51549910--51549943	6	5.5	6	86	6	50	79	0	2	17	0.86
51550296--51550372	40	1.9	40	94	0	136	20	25	18	35	1.95
51550316--51550372	20	2.8	20	69	10	62	17	24	19	38	1.93
51550781--51550885	50	2.1	51	98	1	203	23	8	23	43	1.81
51551174--51551253	42	1.9	42	89	0	124	25	21	33	20	1.97
51551177--51551270	42	2.2	42	80	0	107	23	23	30	22	1.99
51551893--51552043	22	6.9	22	90	0	221	33	14	25	26	1.94
51553787--51553829	17	2.6	16	85	10	59	23	6	4	65	1.37
51555238--51555284	24	2.0	23	87	4	67	51	6	2	40	1.39
51555257--51555356	39	2.6	38	85	1	128	49	8	4	39	1.51
51556065--51556177	33	3.4	33	82	3	93	13	22	18	46	1.83
51556096--51556181	33	2.6	33	88	0	118	16	23	16	44	1.86
51558659--51558710	26	2.0	26	100	0	104	26	3	11	57	1.51
51559204--51559328	51	2.5	49	81	7	144	34	26	16	23	1.95
51561698--51561961	43	6.2	43	78	4	230	28	29	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51562302--51562367	19	3.3	19	69	19	62	57	21	4	16	1.57
51562290--51562367	41	1.9	41	97	0	147	57	20	6	15	1.60
51562694--51562745	23	2.3	23	79	0	59	34	7	30	26	1.85
51565400--51565459	20	3.0	20	97	0	111	35	6	25	33	1.82
51570152--51570211	20	3.0	20	97	0	111	35	6	25	33	1.82
51572740--51572786	24	2.0	24	100	0	94	38	34	2	25	1.68
51572846--51572879	7	4.9	7	88	0	50	26	52	2	17	1.58
51574161--51574527	41	8.9	41	89	1	520	27	27	23	21	1.99
51574587--51574687	40	2.5	40	80	4	125	20	20	21	36	1.95
51574621--51574697	40	1.9	40	83	0	100	22	19	22	36	1.95
51575614--51575672	15	3.9	15	68	14	50	42	0	3	54	1.17
51577349--51577418	22	3.2	22	93	0	122	31	30	0	38	1.58
51577390--51577448	30	2.0	30	93	0	100	30	35	0	33	1.58
51577368--51577470	52	2.0	51	86	5	145	33	33	0	33	1.58
51577420--51577461	22	1.9	22	90	0	66	33	33	0	33	1.58
51577503--51577567	29	2.2	29	89	5	96	35	0	1	63	1.04
51577658--51577691	15	2.3	15	90	5	52	26	0	5	67	1.13
51579847--51580036	23	7.9	23	77	14	177	45	23	0	30	1.57
51579830--51580776	29	34.4	28	76	14	712	42	24	1	31	1.62
51579901--51580386	80	6.1	74	75	17	252	43	25	1	30	1.62
51580009--51580728	86	8.6	84	79	11	660	42	25	0	31	1.62
51580166--51580480	23	12.0	23	70	21	144	42	24	0	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51579830--51580514	109	6.4	105	84	10	666	43	24	0	31	1.60
51580416--51580493	23	3.2	23	71	16	75	48	17	0	33	1.48
51580009--51580776	171	4.5	170	76	14	543	41	24	1	32	1.63
51580557--51580620	23	2.8	23	85	0	83	43	21	0	34	1.53
51580492--51580708	109	2.0	111	92	1	366	41	26	1	30	1.64
51580789--51581054	131	2.0	131	99	0	523	36	11	13	38	1.82
51580816--51581033	62	3.4	63	69	15	212	34	10	15	39	1.81
51582981--51583261	124	2.3	125	86	3	397	30	23	15	29	1.95
51584848--51584891	19	2.3	19	84	7	54	40	0	4	54	1.21
51584856--51584894	19	2.1	18	90	4	60	33	0	5	61	1.18
51594462--51594519	30	1.9	30	89	0	89	41	3	24	31	1.71
51594731--51594762	13	2.5	13	94	0	55	31	0	12	56	1.37
51594862--51595098	50	4.6	50	83	5	253	27	24	28	19	1.99
51594857--51595106	100	2.4	103	84	9	323	28	23	28	20	1.99
51602053--51602110	30	1.9	30	89	0	89	41	3	24	31	1.71
51602322--51602353	13	2.5	13	94	0	55	31	0	12	56	1.37
51602447--51602689	50	4.7	50	82	6	265	27	23	28	19	1.98
51602447--51602697	100	2.4	101	86	7	337	27	23	28	20	1.99
51605104--51605163	12	4.9	12	76	11	50	80	0	11	8	0.92
51605112--51605149	10	3.9	10	83	16	53	81	0	13	5	0.85
51605110--51605161	18	2.8	19	91	2	79	78	0	13	7	0.94
51606179--51606211	17	1.9	17	88	11	50	33	12	27	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51609732--51609821	45	2.0	44	93	2	153	28	13	18	38	1.89
51619299--51619336	20	1.9	19	89	5	58	60	26	13	0	1.33
51620276--51620340	4	16.0	4	75	9	51	20	4	6	69	1.28
51620570--51620610	2	20.5	2	94	0	73	46	0	2	51	1.14
51621635--51621679	22	2.0	22	83	8	56	46	11	6	35	1.66
51623741--51624129	198	2.0	191	95	3	706	31	20	25	23	1.98
51626452--51626487	14	2.6	14	95	0	63	27	22	8	41	1.82
51628786--51628810	9	2.8	9	100	0	50	92	0	0	8	0.40
51630319--51630430	44	2.5	44	78	2	118	33	22	16	27	1.96
51630458--51630961	267	1.9	267	91	0	830	24	25	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202