genome.fa.s10.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  149  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46509088--46509248	18	9.1	18	69	22	74	0	34	0	65	0.93
46509087--46509250	40	4.0	42	72	19	137	0	34	0	65	0.93
46509279--46509349	27	2.6	27	93	0	115	15	26	28	29	1.96
46509279--46509358	27	3.0	27	86	0	79	16	27	27	28	1.97
46509437--46509489	22	2.3	22	87	12	72	50	0	11	37	1.38
46509422--46509514	29	3.5	28	79	20	119	47	0	12	39	1.42
46510070--46510127	23	2.5	23	82	0	71	20	15	13	50	1.78
46511407--46511472	32	2.1	32	97	0	123	27	13	15	43	1.84
46517831--46517967	42	3.3	42	83	8	188	16	32	23	27	1.96
46519512--46519625	60	1.9	60	92	0	192	39	19	20	21	1.93
46525938--46525985	18	2.7	18	80	6	53	31	6	33	29	1.82
46525919--46525996	39	2.1	36	81	11	86	34	3	32	29	1.76
46526434--46526467	17	2.0	17	94	0	59	20	17	8	52	1.71
46529288--46529356	20	3.5	19	69	15	59	30	17	34	17	1.93
46529287--46529366	40	2.0	40	85	0	106	30	17	32	20	1.95
46537924--46538060	32	4.3	32	99	0	265	36	15	10	37	1.81
46540784--46540844	20	3.1	20	72	13	72	37	18	26	18	1.93
46540694--46540851	40	4.0	40	84	5	205	36	15	28	19	1.93
46543066--46543296	29	7.9	29	82	6	234	24	25	13	36	1.92
46543073--46543298	87	2.6	86	85	6	301	24	24	13	37	1.92
46543055--46543287	58	4.0	58	83	5	274	24	25	13	37	1.91
46544602--46544671	35	2.0	36	85	2	97	40	20	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46547721--46547785	26	2.5	26	84	0	85	35	24	16	23	1.95
46550928--46550966	18	2.1	19	85	4	53	53	23	2	20	1.57
46553877--46553934	18	3.4	18	69	9	50	36	1	3	58	1.25
46553882--46553988	19	5.3	19	71	17	74	35	0	4	58	1.25
46553917--46553986	19	3.6	19	82	5	79	32	1	5	60	1.29
46556080--46556137	23	2.5	23	85	0	80	20	13	13	51	1.75
46562750--46563169	210	2.0	209	99	0	831	40	17	9	32	1.82
46564128--46564156	15	1.9	15	100	0	58	48	20	6	24	1.74
46573148--46573409	138	1.9	138	88	3	402	40	8	17	33	1.79
46584759--46584805	19	2.5	19	92	0	76	48	21	0	29	1.50
46586701--46586767	26	2.6	26	90	0	107	22	23	26	26	2.00
46594848--46594912	18	3.7	18	70	14	55	33	0	3	63	1.10
46594858--46594933	16	4.2	18	73	13	59	35	0	5	59	1.20
46596578--46596714	40	3.5	41	76	13	128	40	21	18	20	1.92
46596754--46596948	41	4.8	41	93	0	318	20	21	25	32	1.97
46597497--46597532	15	2.5	15	90	4	56	25	0	38	36	1.56
46597524--46597587	22	3.0	22	77	6	62	21	0	42	35	1.54
46601113--46601257	42	3.4	42	79	5	157	22	15	31	30	1.95
46602086--46602222	50	2.7	50	81	0	175	20	29	24	26	1.99
46606419--46606452	13	2.6	13	100	0	68	29	23	17	29	1.97
46607022--46607071	25	2.0	25	92	0	82	50	20	0	30	1.49
46608141--46608172	12	2.6	13	85	14	50	37	0	6	56	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46610227--46610255	15	1.9	15	100	0	58	48	20	6	24	1.74
46615760--46615858	39	2.6	39	79	7	112	37	4	8	50	1.51
46621826--46621947	23	5.3	23	81	0	154	30	26	21	22	1.99
46621826--46621947	46	2.7	46	89	0	181	30	26	21	22	1.99
46622170--46622208	18	2.2	17	86	13	53	46	20	0	33	1.51
46629366--46629426	30	2.0	30	87	0	86	31	22	26	19	1.98
46629506--46629605	26	3.8	26	81	0	128	38	26	18	18	1.93
46629807--46629997	54	3.6	54	77	5	199	23	15	19	41	1.90
46629807--46630003	27	7.3	27	76	2	173	22	16	19	41	1.90
46631421--46631561	22	6.4	22	89	0	201	28	26	14	31	1.95
46633896--46633929	16	2.2	15	89	5	50	44	0	0	55	0.99
46635183--46635258	38	2.0	37	94	2	134	46	13	13	27	1.80
46637686--46637782	27	3.7	27	71	10	83	18	15	21	44	1.87
46639282--46639335	25	2.2	25	86	0	72	18	46	11	24	1.81
46669333--46669394	30	2.1	30	84	6	81	48	12	8	30	1.70
46676920--46676948	13	2.2	13	100	0	58	37	6	24	31	1.82
46680946--46681070	43	2.9	43	85	2	162	32	24	21	22	1.98
46688096--46688143	23	2.1	23	92	7	80	20	29	4	45	1.70
46689228--46689272	20	2.2	20	84	4	54	26	24	6	42	1.79
46695635--46695687	19	2.8	19	83	13	65	26	0	3	69	1.05
46695626--46695671	18	2.6	16	81	18	56	28	2	2	67	1.14
46696623--46696653	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46696706--46696742	9	4.1	9	85	0	56	48	13	8	29	1.71
46697062--46697098	20	1.9	19	89	10	58	24	32	0	43	1.55
46699468--46699492	11	2.3	11	100	0	50	84	0	0	16	0.63
46702150--46702178	15	1.9	15	100	0	58	55	6	3	34	1.44
46703360--46703440	42	2.0	41	90	2	126	25	24	2	46	1.65
46714057--46714356	148	2.0	146	89	2	449	37	3	12	47	1.59
46715649--46715930	27	10.5	27	78	6	134	38	23	18	18	1.93
46715666--46716134	54	8.7	53	80	5	360	37	20	20	21	1.95
46715649--46716134	80	6.0	80	78	7	412	37	21	19	21	1.95
46715746--46716134	27	14.5	27	82	2	408	35	20	20	22	1.96
46716204--46716262	24	2.5	24	83	5	75	23	8	22	45	1.79
46716434--46716670	32	7.4	32	78	7	221	20	19	21	37	1.94
46716432--46716669	64	3.7	64	80	6	248	20	20	21	37	1.95
46716434--46716621	98	1.9	98	84	4	254	19	19	22	38	1.94
46717328--46717352	10	2.5	10	100	0	50	56	24	0	20	1.43
46722644--46722851	93	2.2	93	97	0	389	34	8	24	33	1.85
46730582--46730614	15	2.2	15	100	0	66	45	9	21	24	1.80
46738795--46739173	27	14.1	27	81	6	360	39	22	19	18	1.92
46738795--46739173	54	7.0	54	83	4	403	39	22	19	18	1.92
46739406--46739471	26	2.5	26	87	2	78	19	22	22	34	1.96
46739418--46739471	26	2.1	26	92	0	90	20	22	22	35	1.96
46739428--46739483	26	2.2	26	86	0	76	16	23	28	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46739474--46739742	32	8.4	32	80	7	233	21	20	20	37	1.94
46739538--46739715	98	1.8	96	85	4	250	20	20	21	37	1.94
46739474--46739722	130	1.9	130	81	6	299	21	20	20	37	1.95
46739734--46739798	22	3.0	21	72	4	58	16	23	16	43	1.88
46739960--46740013	28	1.9	28	88	0	81	16	25	25	31	1.97
46744892--46745162	40	6.8	39	72	7	222	38	18	24	19	1.93
46744893--46745162	80	3.4	80	80	3	294	37	18	24	19	1.93
46744982--46745044	20	3.2	20	66	8	56	34	17	28	19	1.94
46753091--46753231	40	3.5	40	80	3	131	39	17	26	17	1.91
46755791--46755880	28	3.2	28	87	6	121	18	23	25	32	1.97
46755780--46755902	28	4.0	32	74	18	100	21	23	24	30	1.99
46758056--46758197	53	2.6	54	86	2	187	42	19	17	20	1.90
46758056--46758197	27	5.3	27	81	2	160	42	19	17	20	1.90
46758056--46758223	80	2.1	82	82	6	200	41	19	17	22	1.91
46758345--46758410	26	2.5	27	85	4	82	19	19	21	39	1.93
46758541--46758617	28	2.7	29	86	6	113	19	24	27	28	1.99
46758585--46758655	33	2.1	34	84	2	90	22	23	25	28	2.00
46770359--46770442	28	3.0	27	77	10	87	27	17	7	47	1.74
46771990--46772464	236	2.0	237	97	0	907	30	16	14	38	1.89
46777933--46778179	50	4.8	50	81	5	228	28	21	27	23	1.99
46783972--46784049	39	2.0	39	100	0	156	35	15	23	25	1.94
46784034--46784330	50	5.8	50	85	5	330	27	20	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46795407--46795441	18	1.9	18	88	0	52	34	0	37	28	1.58
46796698--46796770	27	2.7	27	80	4	85	30	19	17	32	1.95
46798985--46799065	31	2.5	32	82	6	92	55	2	1	40	1.21
46799043--46799088	22	2.1	22	87	0	65	52	2	0	45	1.13
46799932--46799986	27	2.0	27	92	0	92	36	16	5	41	1.71
46800472--46800496	6	4.2	6	100	0	50	84	0	0	16	0.63
46801756--46801796	21	2.0	21	85	9	57	36	0	4	58	1.20
46807804--46807931	30	4.3	29	85	7	168	33	22	0	42	1.59
46807804--46807931	59	2.2	60	89	1	195	33	22	0	42	1.59
46808466--46808537	4	19.5	4	78	21	70	75	0	25	0	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202