genome.fa.s10.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  184  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56678506--56678539	13	2.6	13	85	0	50	32	35	20	11	1.89
56679468--56679537	21	3.3	21	80	11	81	47	17	22	12	1.81
56682209--56682239	13	2.5	13	94	5	55	35	12	9	41	1.76
56684450--56684480	13	2.5	13	94	5	55	41	9	12	35	1.76
56684920--56684971	20	2.4	22	76	20	56	61	1	7	28	1.34
56685574--56685610	2	18.5	2	100	0	74	48	0	0	51	1.00
56686146--56686216	33	2.2	33	89	0	106	38	12	4	45	1.62
56690341--56690366	2	13.0	2	100	0	52	50	0	0	50	1.00
56690730--56690775	24	1.9	24	86	0	65	36	17	26	19	1.94
56692575--56692608	15	2.4	14	90	5	50	5	17	0	76	0.98
56693216--56693243	9	3.1	9	100	0	56	32	10	10	46	1.73
56693296--56693326	9	3.4	9	90	0	53	38	22	12	25	1.90
56694015--56694085	33	2.2	33	100	0	142	28	21	14	36	1.92
56695250--56695277	13	2.2	13	100	0	56	32	28	17	21	1.96
56698483--56698560	9	8.2	10	72	18	60	65	0	1	33	1.01
56698518--56698611	29	3.2	30	82	5	86	58	3	1	37	1.21
56698767--56698809	20	2.1	20	82	4	50	27	4	6	60	1.43
56698855--56698881	10	2.7	10	100	0	54	18	7	7	66	1.40
56698878--56698949	29	2.5	28	79	4	81	36	2	2	58	1.27
56699037--56699294	91	2.9	91	82	5	292	34	10	20	34	1.88
56699037--56699294	92	2.9	90	81	7	274	34	10	20	34	1.88
56700041--56700073	16	2.1	16	88	11	50	63	0	27	9	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56704179--56704223	22	2.0	23	95	4	83	68	13	13	4	1.35
56706297--56706335	14	2.8	14	84	0	51	33	2	7	56	1.41
56709103--56709280	35	5.0	36	70	9	123	28	23	24	23	1.99
56710767--56710811	20	2.2	21	84	11	58	73	0	20	6	1.05
56716601--56716674	29	2.4	32	76	10	75	25	5	8	60	1.46
56720212--56720247	18	2.1	17	89	5	54	41	2	13	41	1.59
56721569--56721616	22	2.2	22	84	0	60	62	8	6	22	1.46
56730788--56730831	23	1.9	23	95	0	79	22	11	20	45	1.83
56732615--56732694	3	27.3	3	93	5	128	35	0	0	65	0.93
56732769--56732851	2	40.5	2	88	9	123	46	3	1	48	1.27
56736808--56736924	20	6.1	19	67	24	68	76	4	12	6	1.14
56736811--56736896	22	4.2	21	63	22	58	76	3	12	6	1.11
56736802--56736920	59	2.1	59	95	3	215	73	5	13	8	1.24
56737858--56737924	7	9.7	7	93	3	118	73	1	11	13	1.18
56737858--56737930	34	2.1	35	94	2	130	72	1	12	13	1.19
56739229--56739998	44	17.6	44	82	2	791	29	20	25	24	1.99
56739164--56740334	175	6.8	175	82	4	1033	30	21	24	23	1.98
56739229--56740334	219	5.1	219	80	5	1015	30	21	24	23	1.99
56739404--56739959	307	1.8	307	94	0	995	29	20	26	23	1.99
56739886--56740399	250	2.0	253	89	2	775	32	22	20	23	1.98
56739315--56740335	44	23.7	43	77	9	560	31	21	23	23	1.98
56739928--56740460	167	3.2	164	83	5	631	31	22	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56740306--56740460	41	3.7	41	73	7	141	29	21	21	27	1.99
56739843--56740460	83	7.3	83	84	5	566	31	22	21	24	1.98
56741845--56741897	3	18.0	3	96	3	99	33	0	0	66	0.92
56741842--56741899	26	2.2	26	100	0	116	34	0	0	65	0.93
56742008--56742071	2	32.0	2	87	6	94	46	3	1	48	1.27
56744788--56744876	3	30.0	3	72	15	69	28	6	3	61	1.37
56747946--56748017	36	2.0	36	100	0	144	52	16	5	25	1.65
56750983--56751027	18	2.5	19	82	7	58	62	0	2	35	1.08
56755096--56755300	105	2.0	104	79	6	227	22	29	22	24	1.99
56755900--56755964	31	2.0	33	85	11	91	70	1	23	4	1.14
56758182--56758276	50	1.9	50	91	4	156	32	20	29	17	1.96
56758182--56758350	25	6.9	24	75	9	128	36	18	26	18	1.95
56759612--56759668	29	2.0	29	96	0	105	56	7	5	31	1.49
56761152--56761705	244	2.3	244	82	5	665	41	14	13	29	1.85
56761637--56761767	62	2.1	63	90	4	203	48	13	15	22	1.80
56765464--56765498	16	2.2	16	95	5	63	28	0	0	71	0.86
56766642--56766707	27	2.5	26	72	2	60	18	28	4	48	1.67
56768235--56768284	16	3.4	16	71	21	54	48	16	14	22	1.81
56768234--56768297	28	2.3	28	88	0	101	48	15	12	23	1.79
56768900--56769043	63	2.3	63	85	3	191	29	27	19	24	1.98
56771936--56771982	20	2.4	19	76	13	51	59	0	10	29	1.31
56774482--56774526	22	2.0	22	82	0	54	35	20	8	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56775908--56775950	14	3.2	13	80	9	50	76	4	4	13	1.10
56785014--56785055	2	20.5	2	95	4	75	47	2	0	50	1.14
56786796--56786916	16	6.7	17	71	21	95	38	2	0	58	1.11
56786824--56786923	11	10.3	11	68	26	57	38	3	0	59	1.13
56786807--56786935	39	3.3	39	87	7	183	35	2	0	61	1.14
56786807--56786919	37	2.9	38	92	3	174	38	2	0	58	1.12
56786807--56786923	26	4.5	26	70	21	93	37	2	0	59	1.11
56794814--56794907	26	3.6	26	83	11	104	26	24	18	30	1.97
56806520--56806628	56	1.9	56	94	0	191	51	6	6	35	1.53
56806612--56806648	8	4.8	8	87	12	51	62	0	0	37	0.96
56807561--56807663	43	2.4	43	95	0	179	23	21	33	22	1.98
56809523--56809557	17	2.1	16	89	5	52	17	2	5	74	1.14
56814265--56814290	5	5.2	5	100	0	52	38	0	0	61	0.96
56820682--56820768	39	2.2	41	87	4	124	37	2	5	54	1.37
56820799--56820841	10	4.3	10	77	11	52	20	4	18	55	1.60
56820799--56820846	21	2.3	22	82	10	64	20	4	16	58	1.55
56821240--56821284	20	2.4	18	85	10	56	57	4	6	31	1.44
56825485--56825541	21	2.6	21	83	10	71	63	5	0	31	1.17
56836530--56836568	11	3.5	11	89	3	51	2	28	0	69	1.02
56839484--56839525	22	2.0	21	86	9	59	42	16	0	40	1.48
56841512--56841708	98	2.0	98	94	0	349	38	24	9	27	1.86
56842261--56842295	2	17.5	2	87	0	52	51	2	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56842904--56842952	22	2.2	22	85	7	64	36	18	6	38	1.76
56842931--56843043	19	5.8	19	88	4	172	37	15	9	38	1.80
56842908--56843043	40	3.4	38	86	8	182	38	15	8	37	1.79
56842908--56843042	59	2.3	59	87	5	191	38	14	8	37	1.78
56849593--56849637	23	1.9	24	82	13	58	8	44	2	44	1.47
56855226--56855251	3	8.7	3	100	0	52	69	0	30	0	0.89
56856913--56856962	2	25.0	2	100	0	100	50	0	0	50	1.00
56857804--56857904	43	2.4	43	85	5	125	20	29	11	37	1.89
56860255--56860281	12	2.2	12	100	0	54	14	7	29	48	1.71
56871634--56871680	20	2.3	20	89	7	69	27	0	2	70	0.99
56883575--56883683	34	3.3	33	82	10	141	55	1	0	42	1.17
56883602--56883658	15	3.7	15	71	17	53	56	3	0	40	1.17
56883686--56883755	21	3.1	22	74	14	63	48	0	0	51	1.00
56883683--56883818	58	2.4	57	83	6	184	44	0	0	53	1.10
56894457--56894490	16	2.2	15	89	5	50	70	5	0	23	1.09
56894946--56894987	21	2.0	21	100	0	84	38	9	23	28	1.86
56899747--56899824	6	13.0	6	98	0	138	50	19	0	30	1.48
56903732--56903779	6	8.2	6	93	2	80	64	0	35	0	0.94
56907336--56907375	21	2.0	20	90	5	62	25	10	42	22	1.84
56909595--56909654	31	2.0	29	83	6	75	30	20	6	43	1.77
56910187--56910226	3	13.3	3	100	0	80	32	0	0	67	0.91
56922933--56922987	12	4.5	12	79	18	60	23	5	0	70	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56923994--56924020	10	2.7	10	100	0	54	92	0	7	0	0.38
56923988--56924020	10	3.0	11	86	13	50	87	0	9	3	0.63
56926689--56926882	103	1.9	101	82	2	244	32	17	22	27	1.96
56926719--56926911	103	1.9	103	79	4	219	32	18	23	25	1.97
56930412--56930458	24	2.0	24	84	16	62	31	0	17	51	1.46
56932260--56932332	29	2.6	29	86	2	94	31	24	17	26	1.97
56943368--56943468	41	2.4	41	91	1	157	24	27	22	24	2.00
56946801--56946845	15	2.9	16	78	15	51	22	20	0	57	1.40
56946787--56946872	43	2.0	43	88	0	127	22	20	3	53	1.61
56956204--56956243	21	1.9	21	85	10	55	62	2	10	25	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202