Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: Chr10 ID=Chr10-JGI_221_v2.0 Parameters: 2 7 7 80 10 50 1000 Length: 62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  179  of  202  ( 24201 repeats found )
Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55463613--55463670
13
4.4
13
83
12
82
87
12
0
0
0.53
55463613--55463670
17
3.5
16
86
9
80
87
12
0
0
0.53
55463613--55463670
22
2.6
22
91
8
91
87
12
0
0
0.53
55464544--55464972
79
5.5
77
90
3
614
29
15
20
34
1.94
55465333--55465365
16
2.1
16
94
0
57
78
6
0
15
0.93
55466071--55466117
12
3.8
12
82
17
53
72
0
25
2
0.96
55466156--55466190
14
2.5
14
95
0
61
28
45
22
2
1.67
55466296--55466324
15
1.9
15
100
0
58
24
48
20
6
1.74
55466716--55466753
20
1.9
20
94
0
67
31
15
10
42
1.81
55466874--55466917
17
2.5
17
82
13
54
34
18
2
45
1.62
55466927--55467045
48
2.4
50
90
2
188
35
14
7
42
1.74
55467354--55467436
42
2.0
42
100
0
166
51
4
4
38
1.44
55475184--55475581
164
2.4
164
84
7
484
33
29
12
25
1.92
55476790--55476832
20
2.2
20
84
8
54
58
2
4
34
1.32
55480269--55480324
27
2.1
26
83
9
69
42
0
5
51
1.24
55485943--55485980
20
1.9
20
100
0
76
42
10
10
36
1.74
55485946--55486031
33
2.5
35
79
14
97
45
10
11
32
1.75
55486054--55486109
18
3.2
18
80
12
55
39
16
17
26
1.91
55486063--55486109
18
2.6
18
83
16
62
36
12
19
31
1.89
55485945--55486158
17
11.9
17
67
15
94
43
11
12
32
1.78
55486263--55486310
21
2.6
18
78
15
53
45
10
14
29
1.78
55486657--55486710
11
5.1
11
76
14
51
0
16
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55486657--55486707
24
2.1
24
85
7
68
0
15
0
84
0.63
55486662--55486710
7
7.0
7
82
13
57
0
16
0
83
0.64
55486662--55486712
16
2.9
18
85
14
79
0
17
0
82
0.67
55486663--55486723
28
2.2
28
82
11
72
0
21
0
78
0.75
55487013--55487077
13
4.6
13
78
16
67
1
20
0
78
0.83
55487035--55487079
17
2.6
17
82
0
54
0
26
0
73
0.84
55487012--55487077
7
9.3
7
75
15
55
1
19
0
78
0.82
55487414--55487493
29
2.8
29
81
9
101
41
3
21
33
1.71
55487717--55488402
77
8.8
77
90
4
1046
37
20
15
27
1.92
55487716--55488402
311
2.2
309
91
4
1098
37
20
15
27
1.92
55494286--55494754
44
10.7
44
74
8
341
27
23
19
29
1.98
55494287--55494751
175
2.7
175
89
2
679
27
23
19
29
1.98
55494378--55494752
87
4.3
87
76
9
354
28
23
19
29
1.98
55494288--55494754
131
3.6
127
73
11
406
27
23
19
29
1.98
55506870--55506928
3
20.0
3
73
16
52
61
3
3
32
1.29
55506875--55506922
25
1.9
25
82
0
60
62
2
2
33
1.18
55506883--55506943
20
3.3
17
80
19
61
60
1
3
34
1.23
55511225--55511262
20
1.9
20
100
0
76
42
10
10
36
1.74
55511237--55511301
32
2.0
32
82
5
78
47
7
10
33
1.67
55511274--55511438
17
9.2
18
72
14
117
44
9
12
32
1.75
55511274--55511438
35
4.6
35
78
11
140
44
9
12
32
1.75
55511937--55512010
24
3.0
24
74
20
73
1
18
0
79
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55511943--55511999
7
8.0
7
85
14
57
0
15
0
84
0.63
55511943--55512001
17
3.4
17
92
4
91
0
16
0
83
0.66
55511937--55511996
12
5.1
11
76
13
57
1
15
0
83
0.73
55511944--55512012
14
4.9
14
78
8
68
0
20
0
79
0.73
55511952--55512010
17
3.6
17
77
13
61
0
20
0
79
0.73
55512287--55512350
6
10.3
6
76
17
60
0
23
0
76
0.79
55512287--55512350
13
5.2
13
77
19
66
0
23
0
76
0.79
55512299--55512354
19
3.0
19
78
21
73
0
26
0
73
0.84
55512290--55512352
10
6.7
10
75
21
57
0
25
0
74
0.82
55512675--55512768
29
3.2
29
76
10
93
37
5
21
36
1.76
55512693--55512768
29
2.6
30
85
4
102
35
6
22
35
1.80
55517454--55517557
2
52.5
2
79
5
95
44
4
0
50
1.30
55517949--55518256
108
2.8
110
93
3
511
29
15
20
34
1.94
55519514--55519539
2
13.0
2
100
0
52
50
0
0
50
1.00
55523274--55523314
15
2.6
17
77
18
52
60
2
2
34
1.23
55524713--55524757
23
2.0
23
100
0
90
22
13
13
51
1.75
55533775--55533812
20
1.9
20
84
10
51
42
5
13
39
1.66
55535594--55535624
4
7.8
4
100
0
62
51
22
0
25
1.48
55536193--55536260
31
2.2
30
84
2
91
32
16
11
39
1.84
55538349--55538391
19
2.1
22
87
12
65
41
4
0
53
1.21
55548372--55548405
2
17.0
2
100
0
68
0
0
50
50
1.00
55555795--55555865
8
8.4
8
72
17
54
60
4
0
35
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55555815--55555864
17
3.0
17
77
8
50
58
4
0
38
1.17
55555846--55555889
24
2.0
21
86
13
61
59
0
0
40
0.98
55565714--55565751
20
1.9
20
84
10
51
42
0
0
57
0.98
55566652--55566703
19
2.8
18
78
16
61
34
0
1
63
1.06
55566652--55566703
18
2.7
19
82
5
70
34
0
1
63
1.06
55567699--55567734
15
2.4
15
90
0
54
61
0
5
33
1.19
55571715--55571889
84
2.0
85
84
10
223
21
20
24
33
1.97
55571767--55571889
44
2.8
44
73
12
126
21
21
23
34
1.97
55571859--55572524
44
15.5
44
65
12
274
27
25
19
28
1.98
55571978--55572131
82
1.9
83
94
1
274
25
22
20
31
1.98
55571855--55572263
214
2.0
211
91
5
670
27
24
19
28
1.99
55572061--55572620
132
4.3
132
94
0
953
27
25
19
28
1.98
55572623--55572715
43
2.1
45
82
4
109
26
27
16
29
1.97
55573100--55573145
24
1.9
24
90
0
74
36
19
6
36
1.78
55573099--55573151
24
2.2
24
82
0
70
35
16
11
35
1.85
55574098--55574152
22
2.4
23
84
3
67
10
12
0
76
1.02
55576926--55576970
19
2.3
20
85
7
58
40
11
22
26
1.87
55582782--55582993
106
2.0
106
85
1
282
29
5
25
40
1.77
55583819--55583875
29
1.9
30
86
10
82
40
7
15
36
1.75
55584897--55585200
107
2.8
107
88
1
448
33
18
17
30
1.94
55585715--55585754
21
1.9
21
85
10
55
62
2
7
27
1.35
55585842--55585887
17
2.6
18
76
13
51
63
2
8
26
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55586065--55586131
18
3.8
17
75
13
64
59
5
4
29
1.41
55586057--55586107
3
17.3
3
76
11
52
62
3
3
29
1.31
55587763--55588276
175
2.9
175
90
1
791
27
22
20
29
1.98
55587847--55588320
44
10.8
44
71
11
280
27
22
20
29
1.98
55599986--55600288
107
2.8
107
90
1
455
33
18
17
29
1.95
55600860--55600894
18
1.9
18
94
0
61
42
5
11
40
1.65
55601156--55601222
18
3.8
17
75
13
64
59
5
4
29
1.41
55601148--55601198
3
17.3
3
76
11
52
62
3
3
29
1.31
55603408--55603472
24
2.8
24
77
11
71
46
23
6
24
1.75
55603571--55603596
2
13.0
2
100
0
52
50
0
0
50
1.00
55604254--55604396
41
3.5
41
84
0
178
33
27
19
18
1.96
55614009--55614222
41
5.2
41
92
0
329
24
18
28
29
1.98
55617594--55617666
32
2.5
27
76
19
83
26
2
17
53
1.57
55617607--55617667
32
1.9
32
93
0
104
27
3
16
52
1.59
55618903--55618940
20
1.9
20
94
0
67
44
0
2
52
1.14
55619023--55619080
19
3.0
19
92
5
98
46
13
10
29
1.77
55619025--55619088
20
3.2
20
95
2
112
48
10
10
29
1.73
55622733--55622778
19
2.5
18
82
3
56
36
8
8
45
1.66
55622974--55623006
10
3.4
10
87
8
50
66
0
0
33
0.92
55624852--55624877
13
2.0
13
100
0
52
61
0
0
38
0.96
55624924--55625169
134
1.9
127
84
5
321
52
8
11
27
1.68
55624924--55625188
127
2.0
132
82
5
324
52
9
12
26
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55627579--55627631
12
4.4
12
87
0
70
9
49
9
32
1.67
55627589--55627634
6
7.7
6
95
0
65
10
50
6
32
1.63
55629319--55629381
4
15.8
4
100
0
126
50
23
0
25
1.49
55631368--55631476
45
2.5
42
79
4
119
35
20
17
26
1.94
55631368--55631502
42
3.1
44
75
8
125
36
18
15
29
1.92
55632468--55632510
15
2.8
16
86
10
63
6
13
0
79
0.93
55635817--55635849
17
1.9
17
93
0
57
63
0
0
36
0.95
55640856--55641087
9
24.6
9
68
17
89
60
3
3
31
1.31
55640926--55641087
29
5.5
29
70
17
84
58
4
2
34
1.31
55641033--55641090
19
3.1
19
80
7
73
60
3
1
34
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202