genome.fa.s10.2.7.7.80.10.50.1000.202.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  202  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61958135--61958687	81	6.9	80	82	5	609	30	17	9	42	1.81
61958135--61958687	241	2.3	239	80	7	636	30	17	9	42	1.81
61963253--61963293	21	2.0	21	85	4	57	46	0	0	53	1.00
61971541--61971597	27	2.0	29	83	6	73	61	1	0	36	1.07
61971821--61971861	21	2.0	20	85	4	55	34	0	9	56	1.32
61981928--61982382	174	2.6	174	90	0	721	35	19	13	31	1.91
61984228--61984282	26	2.0	28	89	6	87	61	12	10	14	1.56
61986188--61986234	3	15.7	3	100	0	94	34	0	0	65	0.93
61990320--61990468	54	2.8	54	78	13	148	27	18	20	32	1.96
61991706--61991765	30	2.1	27	81	9	66	41	18	6	33	1.76
61994486--61994590	41	2.5	42	93	3	176	57	12	10	20	1.64
61996233--61996265	15	2.1	16	88	5	50	27	0	0	72	0.85
62001046--62001268	121	1.8	122	97	0	421	40	15	9	33	1.81
62001168--62001809	192	3.5	184	89	6	992	47	13	9	29	1.74
62002503--62002589	40	2.2	38	82	12	95	49	1	5	43	1.34
62003349--62003409	30	2.0	30	100	0	122	32	3	13	50	1.57
62003876--62003904	2	14.5	2	100	0	58	48	0	0	51	1.00
62004652--62004676	13	1.9	13	100	0	50	48	0	4	48	1.20
62006458--62006489	15	2.2	15	94	5	57	21	0	21	56	1.43
62011037--62011094	29	2.0	29	86	0	80	36	15	10	37	1.82
62016481--62016811	183	1.8	183	87	1	502	43	23	7	25	1.79
62017622--62017681	31	2.0	31	86	3	86	40	3	1	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62018985--62019024	9	4.4	9	87	0	62	40	22	12	25	1.89
62020825--62021283	88	4.8	101	79	12	332	29	10	18	41	1.84
62020925--62021307	94	4.1	91	82	9	400	28	11	18	42	1.84
62029240--62029298	29	2.0	30	83	3	75	32	1	13	52	1.50
62029314--62029338	12	2.1	12	100	0	50	52	0	0	48	1.00
62029938--62029986	24	2.0	24	96	0	89	55	12	10	22	1.66
62043470--62043556	11	8.6	11	70	22	66	60	0	1	37	1.04
62043461--62043556	40	2.4	40	91	3	149	62	0	1	36	1.02
62043477--62043553	9	8.1	9	77	11	64	59	0	0	40	0.97
62043456--62043556	39	2.5	39	88	3	157	60	0	0	38	1.04
62044894--62044918	2	12.5	2	100	0	50	48	0	0	52	1.00
62045397--62046010	313	2.0	312	88	4	925	27	9	14	48	1.74
62052958--62052989	15	2.1	15	100	0	64	37	6	37	18	1.76
62054596--62054685	28	3.2	28	83	7	121	62	0	1	36	1.03
62054635--62054695	18	3.7	16	79	14	70	59	0	0	40	0.98
62054637--62054677	18	2.3	18	100	0	82	63	0	0	36	0.95
62054638--62054696	16	3.7	16	78	13	59	61	0	0	38	0.96
62055884--62055917	16	2.1	17	88	5	52	41	11	17	29	1.85
62057597--62057631	15	2.5	14	86	13	54	14	8	0	77	0.99
62060374--62060409	6	6.0	6	90	0	54	33	0	2	63	1.08
62060369--62060406	18	2.0	20	90	10	62	31	0	5	63	1.17
62063759--62063871	60	1.9	60	88	0	172	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62066302--62066342	20	2.0	20	85	0	55	31	0	4	63	1.15
62067097--62067165	27	2.6	27	83	0	93	39	11	0	49	1.39
62067203--62067287	27	3.2	27	88	1	118	24	30	27	17	1.97
62077542--62077575	14	2.3	15	95	5	61	82	14	0	2	0.79
62077544--62077586	21	2.0	21	86	8	61	81	13	0	4	0.84
62081351--62081384	9	3.7	9	88	7	50	67	0	0	32	0.91
62081350--62081392	19	2.4	17	88	7	59	69	0	0	30	0.88
62086888--62086918	6	5.0	6	92	7	53	16	0	0	83	0.64
62086888--62086918	13	2.5	12	94	5	53	16	0	0	83	0.64
62086872--62086930	19	3.1	19	75	2	64	27	1	0	71	0.96
62092543--62092608	30	2.2	31	83	2	80	39	9	10	40	1.71
62093708--62093743	9	4.0	9	89	10	56	80	0	0	19	0.71
62093713--62093743	10	3.2	10	95	4	55	80	0	0	19	0.71
62093882--62093934	13	4.1	13	78	9	63	32	7	22	37	1.82
62097110--62097147	20	2.0	20	89	5	60	71	2	0	26	1.00
62097422--62097454	2	16.5	2	100	0	66	48	0	0	51	1.00
62101990--62102065	30	2.5	31	85	6	102	38	22	17	22	1.93
62103340--62103390	22	2.3	22	86	6	68	45	5	0	49	1.26
62103354--62103398	22	2.0	22	95	0	81	44	4	0	51	1.21
62103311--62103438	66	1.9	66	87	6	188	36	3	0	60	1.13
62112848--62112945	51	1.9	51	82	0	124	39	8	21	30	1.82
62114567--62114718	76	2.0	76	98	0	295	25	13	19	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62114767--62114865	43	2.3	43	92	3	173	12	30	9	48	1.71
62115686--62116262	290	2.0	291	91	2	935	34	16	18	30	1.93
62131623--62131686	31	2.1	31	88	5	94	42	9	17	31	1.81
62144214--62144238	2	12.5	2	100	0	50	52	0	0	48	1.00
62146807--62146850	2	23.0	2	90	9	74	52	0	0	47	1.00
62147127--62147153	10	2.7	10	100	0	54	48	11	0	40	1.39
62148026--62148064	12	3.2	12	92	0	60	33	0	25	41	1.56
62148026--62148064	18	2.2	18	90	0	60	33	0	25	41	1.56
62159852--62159901	15	3.3	15	88	0	73	20	38	0	42	1.52
62165345--62165386	22	1.9	22	85	0	57	4	33	0	61	1.17
62165534--62165566	17	1.9	17	88	11	50	3	12	3	81	0.91
62166404--62166449	9	5.1	9	94	0	74	39	0	0	60	0.97
62166407--62166454	9	5.6	8	85	9	60	41	0	0	58	0.98
62168882--62169063	60	3.0	60	99	0	355	34	25	11	28	1.91
62168919--62169063	29	4.8	31	68	9	120	34	26	11	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202

The End!