genome.fa.s10.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  104  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31719152--31719204	25	2.1	25	86	6	72	67	1	1	28	1.11
31719690--31719758	24	2.8	24	78	10	68	13	8	24	53	1.67
31724473--31724595	24	4.9	23	70	20	59	57	6	8	27	1.52
31724469--31724666	26	7.8	25	70	19	101	57	6	8	28	1.52
31724505--31724666	53	3.2	52	74	15	167	58	6	6	28	1.50
31724572--31724620	22	2.3	22	85	3	64	63	4	4	28	1.31
31724501--31724645	75	1.9	77	83	11	188	59	6	6	28	1.46
31724754--31724877	51	2.5	46	76	15	117	59	2	5	32	1.33
31724793--31724860	25	2.7	26	81	9	77	61	2	4	30	1.30
31724826--31724873	21	2.3	20	82	10	60	64	0	4	31	1.12
31724814--31724882	25	3.1	21	84	12	77	66	1	2	28	1.14
31727730--31727774	21	2.1	21	87	0	63	71	4	15	8	1.28
31728688--31728722	2	17.5	2	93	0	61	45	2	0	51	1.16
31729715--31729826	60	1.9	59	86	1	161	43	7	7	41	1.59
31730254--31730279	6	4.3	6	100	0	52	34	50	0	15	1.45
31739423--31739447	3	8.3	3	100	0	50	32	0	0	68	0.90
31741388--31741463	24	3.1	24	84	5	100	15	26	23	34	1.95
31750258--31750305	25	1.9	25	91	0	78	16	27	18	37	1.92
31750250--31750315	25	2.6	25	77	13	73	22	25	19	31	1.98
31751307--31752269	504	1.9	504	88	0	1471	26	20	22	30	1.98
31752254--31752281	2	14.0	2	100	0	56	50	50	0	0	1.00
31759777--31759822	21	2.0	25	84	16	64	34	0	8	56	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31763181--31763224	17	2.5	17	81	3	52	65	0	6	27	1.17
31763434--31763515	20	4.3	19	71	14	62	26	3	2	67	1.20
31763611--31763816	87	2.4	86	85	7	271	38	6	16	38	1.74
31764237--31764262	5	5.2	5	100	0	52	42	19	19	19	1.90
31764352--31764382	5	6.2	5	100	0	62	38	19	19	22	1.93
31765333--31765369	9	4.1	9	92	0	65	29	10	13	45	1.77
31765422--31765452	9	3.4	9	90	0	53	38	22	12	25	1.90
31765639--31766208	285	2.0	285	97	0	1086	23	32	16	27	1.96
31770659--31770795	30	4.6	30	73	8	91	35	24	21	18	1.95
31772579--31772613	17	2.1	17	88	0	52	74	0	8	17	1.06
31773219--31773261	18	2.5	17	76	3	50	32	0	4	62	1.15
31781219--31781285	23	2.9	23	95	0	116	29	29	4	35	1.77
31783783--31783826	20	2.2	21	88	8	65	77	2	13	6	1.07
31788015--31788081	23	2.9	23	90	0	107	31	29	2	35	1.73
31794894--31794923	16	1.9	16	93	6	53	50	20	0	30	1.49
31804221--31804826	302	2.0	302	92	0	1016	33	14	28	23	1.94
31822557--31822667	47	2.4	47	81	3	134	38	23	11	26	1.89
31827667--31827701	11	3.2	11	100	0	70	17	8	40	34	1.80
31829187--31829223	9	3.9	9	86	13	56	13	18	2	64	1.39
31840273--31840314	10	4.3	10	78	6	50	28	11	23	35	1.91
31842446--31842651	27	7.6	27	82	2	234	18	18	19	42	1.89
31843357--31843395	10	3.9	10	93	6	62	69	7	23	0	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849481--31849555	28	2.7	28	83	4	80	22	25	29	22	1.99
31849504--31849563	28	2.1	28	87	0	84	26	23	26	23	2.00
31849912--31850081	27	6.3	27	85	5	236	21	20	15	42	1.89
31853072--31853135	32	2.0	32	96	0	119	40	3	23	32	1.70
31854568--31854593	13	2.0	13	100	0	52	61	0	15	23	1.33
31857903--31857969	25	2.7	25	85	0	89	34	16	20	28	1.95
31860885--31861123	50	4.7	50	82	5	250	21	26	22	29	1.99
31863786--31863828	13	3.3	13	83	0	59	32	20	6	39	1.80
31877608--31877690	30	2.8	30	90	0	130	27	27	10	33	1.90
31888092--31888162	36	2.0	36	83	5	90	39	12	22	25	1.89
31890000--31890111	33	3.3	33	67	16	84	26	25	16	31	1.96
31889951--31890113	69	2.4	69	88	2	238	26	26	17	30	1.97
31907627--31907660	17	2.1	16	88	5	50	76	14	0	8	1.01
31915668--31915737	6	11.8	6	75	6	63	21	1	2	74	1.03
31915703--31915750	25	1.9	25	83	8	62	29	2	2	66	1.14
31918727--31918847	41	3.0	41	85	3	156	34	17	28	19	1.95
31931406--31931460	16	3.4	16	78	9	58	43	5	21	29	1.75
31935579--31935989	23	18.0	23	72	11	281	39	22	4	34	1.73
31935568--31935986	160	2.6	157	80	6	450	39	22	4	34	1.74
31940522--31940561	21	1.9	21	94	0	71	65	7	12	15	1.47
31941371--31941436	23	2.7	25	90	6	100	39	10	9	40	1.71
31943802--31943841	20	2.0	20	95	0	71	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31944866--31944923	17	3.2	18	75	7	55	25	24	0	50	1.50
31947480--31947535	28	2.0	28	100	0	112	35	17	3	42	1.67
31947639--31947675	12	2.7	14	84	16	51	45	0	2	51	1.15
31947641--31947685	15	3.2	15	85	14	53	48	0	4	46	1.22
31954652--31954714	30	2.1	31	87	3	92	17	49	1	31	1.56
31955245--31955282	19	2.0	19	94	0	67	34	10	23	31	1.89
31962375--31962534	80	2.0	80	95	0	284	34	20	15	29	1.94
31963298--31963363	24	2.8	24	80	0	78	42	18	18	21	1.89
31967392--31967498	49	2.3	46	80	13	123	42	2	3	50	1.34
31967449--31967492	23	1.9	23	81	9	54	38	4	2	54	1.33
31967572--31967617	25	1.9	23	86	8	65	47	0	2	50	1.13
31972515--31972539	12	2.1	12	100	0	50	44	8	8	40	1.63
31979616--31979923	102	3.0	100	86	1	427	37	19	12	31	1.88
31985936--31986091	27	5.8	27	79	0	168	42	19	17	20	1.90
31985944--31986091	54	2.7	54	87	0	188	42	18	18	20	1.89
31985936--31986091	81	1.9	81	85	2	215	42	19	17	20	1.90
31987267--31987308	20	2.1	20	82	8	50	7	19	16	57	1.62
31989547--31989672	55	2.3	53	80	10	137	21	23	28	26	1.99
31991263--31991343	27	3.0	27	83	3	92	20	19	28	30	1.97
31998913--31998955	22	1.9	23	90	4	70	18	32	6	41	1.77
32003506--32003541	16	2.2	17	90	5	56	41	0	47	11	1.39
32006335--32006385	19	2.8	18	78	18	61	52	3	1	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32006845--32006884	19	2.1	19	86	9	55	32	2	5	60	1.32
32013446--32013472	3	9.0	3	100	0	54	66	0	0	33	0.92
32020787--32020837	19	2.6	20	78	6	59	29	1	1	66	1.13
32021783--32021829	7	6.7	7	100	0	94	27	0	14	57	1.38
32022798--32022926	59	2.1	61	88	5	192	34	5	8	51	1.56
32025063--32025091	3	9.7	3	100	0	58	0	34	0	65	0.93
32025981--32026043	25	2.5	25	78	0	72	22	23	1	52	1.56
32026120--32026775	126	5.4	124	81	8	656	27	16	16	39	1.90
32026482--32026709	112	2.1	107	83	5	278	28	17	15	38	1.91
32026859--32026999	27	4.9	27	79	11	129	41	17	0	41	1.49
32026859--32026999	28	4.9	29	77	16	98	41	17	0	41	1.49
32026901--32026968	33	2.1	33	94	0	118	44	11	0	44	1.40
32029946--32030120	93	1.9	94	92	1	298	47	3	11	37	1.57
32030073--32030199	49	2.6	48	83	5	157	48	1	10	40	1.47
32045590--32045625	18	2.0	18	88	0	54	33	11	22	33	1.89
32046874--32046908	7	5.0	7	92	0	52	80	0	5	14	0.89
32046892--32046937	18	2.6	18	82	6	58	76	2	0	21	0.90
32065489--32065528	12	3.2	12	89	3	53	67	2	22	7	1.28
32065530--32065555	9	2.9	9	100	0	52	53	0	34	11	1.37
32069682--32069817	68	2.0	68	98	0	263	48	11	15	25	1.77
32070188--32070256	26	2.7	26	84	4	86	24	21	27	26	1.99
32078129--32078164	18	2.0	18	89	10	56	44	0	22	33	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32085194--32085266	24	3.0	24	81	2	83	27	20	21	30	1.98
32086047--32086116	34	2.1	34	100	0	140	22	8	27	41	1.83
32094766--32094918	68	2.2	68	94	0	270	24	24	15	35	1.94
32095732--32095812	42	1.9	42	87	0	117	19	29	23	27	1.98
32096504--32096793	40	7.3	40	87	1	404	31	17	30	21	1.96
32098798--32098831	17	2.0	17	88	0	50	61	0	5	32	1.20
32098872--32098939	25	2.7	25	82	8	84	73	4	0	22	1.01
32098895--32098955	15	4.1	16	77	12	58	68	4	0	26	1.09
32098897--32098938	14	2.9	14	82	10	50	71	2	0	26	0.98
32098988--32099086	26	3.8	26	79	10	112	60	3	3	33	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202