genome.fa.s10.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  119  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36863328--36863378	23	2.2	23	89	0	75	41	19	9	29	1.84
36869789--36869992	27	7.6	27	69	15	93	27	15	29	27	1.96
36869854--36870020	54	3.1	54	68	24	161	27	16	30	25	1.96
36869848--36870075	108	2.1	108	97	0	429	27	17	29	26	1.97
36869875--36870045	54	3.2	52	67	24	138	26	17	30	25	1.97
36869908--36870074	54	3.1	53	67	22	148	27	17	29	25	1.97
36870107--36870290	53	3.5	53	83	0	224	40	11	21	25	1.88
36870107--36870290	27	6.9	27	68	2	120	40	11	21	25	1.88
36872297--36872400	41	2.5	42	80	6	124	23	24	22	30	1.99
36878107--36878195	35	2.5	35	80	3	90	24	20	28	26	1.99
36880844--36880970	40	3.2	40	88	0	191	20	29	18	32	1.96
36880844--36880907	20	3.2	20	65	8	58	18	32	20	28	1.96
36880865--36880926	20	3.1	20	68	9	54	14	33	19	32	1.92
36881272--36881296	11	2.3	11	100	0	50	28	0	0	72	0.86
36884518--36884611	25	3.8	25	76	5	100	29	20	20	29	1.97
36887442--36887501	28	2.1	28	81	6	68	43	8	15	33	1.76
36899353--36899405	21	2.5	21	78	0	61	33	7	32	26	1.84
36908610--36908678	24	2.9	24	82	8	79	52	7	4	36	1.49
36911251--36911326	39	1.9	39	100	0	152	40	5	18	35	1.73
36925109--36925170	25	2.5	25	86	0	79	29	22	24	24	1.99
36925129--36925198	25	2.8	25	86	0	86	32	12	24	30	1.93
36928221--36928262	13	3.3	13	73	6	50	21	30	30	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36928206--36928277	25	2.9	25	93	0	117	22	31	27	18	1.97
36931541--36931613	38	1.9	37	86	8	103	31	21	1	45	1.61
36931743--36931864	23	5.3	23	93	0	208	32	25	21	20	1.97
36934349--36934389	18	2.3	18	95	4	75	31	12	21	34	1.91
36935258--36935474	71	3.1	71	61	21	159	46	5	9	38	1.60
36935162--36935583	138	3.1	138	92	0	702	44	5	8	40	1.58
36942232--36942262	9	3.4	9	90	0	53	25	12	22	38	1.90
36942298--36942334	9	4.1	9	92	0	65	45	13	10	29	1.77
36942690--36942753	19	3.4	19	85	10	78	23	28	0	48	1.51
36947416--36947466	17	2.8	18	70	21	52	19	9	33	37	1.85
36948279--36948338	29	2.1	29	100	0	120	31	16	6	45	1.74
36948279--36948327	16	3.2	16	66	16	50	30	12	8	48	1.69
36949964--36950148	50	3.7	49	80	3	163	30	20	16	32	1.94
36950435--36950459	6	4.2	6	100	0	50	52	32	0	16	1.44
36950931--36950955	7	3.6	7	100	0	50	72	0	28	0	0.86
36957507--36957708	44	4.7	43	70	11	135	28	23	19	28	1.98
36957475--36957755	129	2.2	128	83	3	350	28	22	20	28	1.99
36957719--36958671	131	7.3	130	91	1	1233	24	23	20	31	1.98
36958246--36958557	44	7.1	43	65	15	138	24	23	19	32	1.98
36959912--36959941	7	4.4	7	91	8	53	13	13	0	73	1.10
36959912--36959944	13	2.5	13	100	0	66	15	15	0	69	1.19
36965697--36965737	20	2.1	20	86	4	57	75	7	4	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36979022--36979156	39	3.4	39	86	6	182	29	2	21	46	1.63
36979088--36979135	25	2.0	22	84	11	60	31	0	20	47	1.50
36984813--36984847	17	2.0	18	94	5	63	40	2	22	34	1.69
36984892--36984994	48	2.2	47	87	1	143	27	11	23	37	1.89
36995837--36995879	19	2.3	19	95	0	77	32	4	25	37	1.77
36999439--36999516	27	2.9	26	79	11	77	20	19	20	39	1.92
36999449--36999536	27	3.3	26	77	6	86	18	18	20	43	1.89
37000520--37000571	27	1.9	27	84	0	68	55	5	38	0	1.24
37004471--37004508	19	2.0	19	89	0	58	5	26	23	44	1.74
37015154--37015185	16	2.0	16	93	0	55	31	25	28	15	1.96
37017703--37017732	16	1.9	16	93	6	53	50	20	0	30	1.49
37035969--37036031	30	2.2	30	82	5	76	26	30	22	20	1.98
37036647--37036676	16	1.9	16	93	6	53	50	20	0	30	1.49
37038830--37038904	38	2.0	38	100	0	150	48	0	8	44	1.32
37038868--37038985	48	2.4	49	92	4	195	49	0	8	41	1.39
37038868--37038938	22	3.0	22	68	20	63	47	0	8	43	1.33
37046474--37046650	42	4.2	42	83	0	212	30	19	20	29	1.97
37047983--37048012	16	1.9	15	93	6	51	26	23	13	36	1.92
37053817--37053923	37	2.9	37	68	15	112	23	20	21	34	1.97
37060386--37060421	13	2.8	13	95	0	63	36	13	13	36	1.85
37061387--37061625	51	4.7	50	77	4	228	25	16	28	29	1.97
37061387--37061626	101	2.4	101	84	1	293	25	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37068089--37068179	45	2.0	45	97	0	173	25	25	19	29	1.99
37071102--37071282	50	3.5	50	80	6	148	27	19	28	24	1.99
37071096--37071336	49	4.7	50	77	5	173	27	20	26	25	1.99
37077796--37077825	12	2.4	13	94	5	53	20	6	6	66	1.38
37079640--37079775	40	3.4	39	77	9	125	36	22	22	19	1.95
37079800--37079890	41	2.2	40	81	7	112	26	21	23	28	1.99
37080147--37080179	15	2.3	15	89	5	50	36	0	30	33	1.58
37080289--37080362	14	5.3	14	87	6	87	21	0	47	31	1.51
37080289--37080354	7	9.4	7	91	0	96	19	0	48	31	1.49
37080289--37080363	21	3.6	21	83	5	89	21	0	46	32	1.51
37081792--37081873	38	2.2	38	88	0	119	21	14	7	56	1.63
37085120--37085236	43	2.7	43	92	1	191	23	17	26	31	1.97
37085544--37085843	24	12.8	24	69	14	144	54	4	6	34	1.47
37086607--37086661	19	2.8	20	80	5	76	16	29	5	49	1.68
37086604--37086670	19	3.5	20	79	6	75	13	34	4	47	1.63
37087123--37087841	44	16.7	44	71	10	351	27	22	19	30	1.98
37087078--37087755	173	3.9	173	85	3	861	27	22	19	30	1.98
37087076--37087861	129	6.1	129	73	11	520	27	22	19	30	1.98
37093583--37093608	12	2.2	12	100	0	52	53	7	0	38	1.30
37093848--37094147	24	12.8	24	68	14	135	54	4	7	34	1.48
37093925--37094130	70	3.0	69	73	7	182	54	5	6	33	1.49
37094901--37094970	20	3.6	20	73	5	63	14	31	2	51	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37103684--37103729	9	5.1	9	94	0	83	30	10	13	45	1.77
37119745--37119824	35	2.3	35	80	0	88	30	27	17	25	1.97
37120090--37120133	6	7.3	6	100	0	88	68	0	31	0	0.90
37121100--37121134	16	2.1	17	89	5	54	40	5	20	34	1.76
37121514--37121596	25	3.3	24	77	9	78	27	25	21	25	1.99
37121531--37121794	50	5.2	50	68	17	166	31	20	23	25	1.98
37121532--37121639	25	4.3	25	78	2	110	30	23	22	24	1.99
37121682--37121794	25	4.5	25	76	2	111	30	23	23	23	1.99
37121523--37121832	155	2.0	155	96	0	575	30	18	23	27	1.97
37124861--37125146	101	2.8	101	91	1	466	26	18	24	30	1.98
37124861--37125144	51	5.6	48	70	13	180	26	19	24	30	1.98
37125150--37125248	46	2.2	43	82	8	117	24	18	25	32	1.97
37125372--37125403	16	2.0	16	93	0	55	59	0	15	25	1.36
37133144--37133176	17	1.9	17	93	0	57	48	0	6	45	1.27
37134345--37134463	25	4.8	25	79	6	134	26	24	22	26	2.00
37134343--37134463	50	2.4	51	83	5	149	26	24	22	26	2.00
37136593--37136642	23	2.0	24	82	17	59	10	12	12	66	1.46
37137373--37137520	50	3.0	50	75	2	154	22	22	22	31	1.98
37137346--37137532	100	1.9	100	86	2	268	23	20	23	32	1.98
37137522--37137666	45	3.2	44	78	11	127	24	24	24	26	2.00
37137522--37137667	44	3.3	43	80	8	132	24	25	23	26	2.00
37137595--37137693	45	2.2	45	80	3	110	26	32	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37137724--37137862	44	3.2	44	68	15	142	23	20	20	35	1.96
37137685--37137879	88	2.2	88	93	1	329	23	22	22	31	1.98
37137747--37137887	44	3.2	44	68	15	137	25	19	21	33	1.97
37137787--37138031	132	1.9	132	94	0	436	25	22	21	30	1.99
37151849--37151923	30	2.5	30	86	0	105	21	25	28	25	1.99
37151866--37151922	17	3.6	17	65	18	50	22	24	28	24	2.00
37177577--37177620	15	2.7	17	83	16	58	50	2	0	47	1.13
37178517--37178569	25	2.1	25	92	0	88	24	28	16	30	1.97
37182109--37182171	28	2.3	27	83	8	81	31	14	7	46	1.73
37185758--37185789	11	3.1	11	82	17	50	62	18	0	18	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202