genome.fa.s10.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  103  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31478920--31478982	23	2.7	23	90	2	90	25	3	33	38	1.72
31483178--31483223	13	3.2	15	76	17	53	6	26	0	67	1.15
31483219--31483257	19	2.1	19	90	9	62	5	17	2	74	1.12
31485010--31485034	13	1.9	13	100	0	50	56	36	0	8	1.29
31485774--31485836	23	2.7	24	92	2	101	25	4	33	36	1.77
31488564--31488612	15	3.5	15	79	17	52	57	2	0	40	1.10
31488589--31488683	22	4.5	21	72	18	81	57	1	0	41	1.05
31488626--31488683	23	2.5	22	83	5	62	60	1	0	37	1.07
31488581--31488680	38	2.7	35	77	18	105	57	2	0	41	1.10
31488747--31488797	21	2.4	21	83	9	77	56	1	3	37	1.29
31488748--31488792	20	2.2	21	92	4	74	55	2	4	37	1.32
31488789--31488817	14	2.1	14	93	6	51	68	3	0	27	1.05
31488769--31488840	34	2.1	35	87	7	103	61	2	1	34	1.19
31488892--31488961	24	3.0	22	83	10	77	75	5	5	12	1.16
31488900--31488961	24	2.6	23	87	7	88	77	4	4	12	1.09
31490554--31490599	22	2.1	22	88	4	67	32	4	8	54	1.51
31490765--31490874	50	2.2	50	80	0	130	27	23	29	20	1.99
31491045--31491111	9	7.4	9	91	0	107	46	22	7	23	1.77
31495684--31495719	17	2.1	17	89	5	54	19	2	11	66	1.35
31496027--31496093	23	2.9	23	88	2	98	49	22	17	10	1.77
31503656--31503765	55	2.0	55	100	0	220	41	12	18	27	1.86
31504389--31504431	21	2.0	21	86	8	61	34	0	6	58	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31504447--31504496	20	2.4	22	93	6	86	48	2	2	48	1.24
31504459--31504553	10	9.6	10	68	19	56	45	0	2	52	1.12
31505422--31505461	20	2.0	21	85	5	55	42	0	0	57	0.98
31507939--31508001	28	2.3	28	94	2	110	49	0	9	41	1.35
31510768--31510817	21	2.3	21	96	3	91	58	26	6	10	1.54
31513733--31513757	3	8.3	3	100	0	50	68	32	0	0	0.90
31520632--31520680	18	2.6	19	78	18	57	73	2	2	22	1.04
31527635--31527701	26	2.5	26	80	7	73	34	2	2	59	1.28
31531783--31531816	6	5.7	6	89	0	50	67	14	5	11	1.39
31532235--31532269	13	2.6	13	90	4	52	68	0	20	11	1.20
31533493--31534080	87	6.8	87	92	0	944	30	22	23	23	1.99
31534199--31534447	44	5.8	44	69	11	158	32	22	18	25	1.97
31534198--31534463	129	2.1	128	89	0	406	31	23	18	25	1.98
31537703--31537741	19	2.1	19	100	0	78	35	10	15	38	1.81
31539683--31539737	20	2.9	19	75	20	53	54	3	1	40	1.28
31541958--31541991	17	2.0	17	88	0	50	47	8	2	41	1.50
31545783--31545965	98	1.9	98	91	2	305	30	14	16	38	1.88
31548595--31548627	14	2.4	14	94	0	57	36	15	9	39	1.79
31550636--31550672	5	7.4	5	88	11	58	37	0	0	62	0.96
31550700--31550742	21	2.0	21	90	0	68	76	4	13	4	1.10
31552004--31552048	21	2.1	21	87	0	63	17	31	24	26	1.97
31552351--31552421	35	2.0	35	91	0	115	46	2	15	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31554599--31554632	17	2.0	17	100	0	68	23	29	0	47	1.52
31557615--31557694	40	2.0	41	82	9	101	38	23	22	15	1.92
31557811--31558076	41	6.5	41	84	8	310	20	24	23	31	1.98
31557801--31558076	123	2.2	122	85	6	360	19	24	23	31	1.98
31562016--31562183	45	3.7	45	73	20	177	47	11	1	39	1.50
31562074--31562208	16	8.7	15	74	21	111	46	12	1	39	1.51
31562033--31562219	93	2.0	95	92	4	317	46	12	2	39	1.53
31562158--31562213	9	6.8	9	73	19	59	48	16	0	35	1.46
31562074--31562208	31	4.4	31	71	25	115	46	12	1	39	1.51
31562150--31562236	40	2.2	40	76	15	92	52	13	1	32	1.48
31567698--31567868	66	2.6	65	86	4	218	39	18	28	13	1.89
31567850--31567908	21	2.8	21	84	5	75	30	16	45	6	1.74
31568224--31568646	43	9.8	43	87	2	591	22	21	30	26	1.99
31570598--31570664	23	3.0	22	71	6	62	10	28	25	35	1.89
31571698--31571804	11	10.4	11	72	21	65	58	0	3	37	1.16
31571690--31571812	30	4.4	30	75	20	140	60	0	3	35	1.13
31571737--31571782	18	2.5	19	86	10	69	65	0	0	34	0.93
31571741--31571781	9	4.7	9	87	6	66	68	0	0	31	0.90
31571707--31571821	50	2.4	49	85	8	148	60	0	2	36	1.10
31575216--31575272	29	2.0	29	82	6	71	31	3	31	33	1.75
31578870--31578946	33	2.3	32	80	6	82	27	23	16	32	1.96
31579029--31579111	41	2.0	41	97	0	157	25	20	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31579026--31579125	41	2.7	35	78	16	119	25	21	18	36	1.95
31594027--31594106	42	1.9	42	89	0	124	35	28	16	20	1.94
31598655--31598722	14	4.8	14	79	13	52	41	44	0	14	1.45
31599222--31599270	15	3.3	15	82	8	64	46	30	0	22	1.52
31599607--31599805	40	4.8	40	76	11	202	23	24	22	30	1.99
31599647--31599898	89	2.8	92	89	4	395	23	24	22	30	1.99
31599830--31599920	40	2.3	40	94	0	155	20	26	25	27	1.99
31599830--31599937	40	2.7	40	86	4	146	23	27	23	25	2.00
31601004--31601055	19	2.8	20	82	11	74	61	0	3	34	1.14
31601956--31602058	35	2.9	35	100	0	206	37	26	6	29	1.82
31604799--31604865	25	2.8	23	73	10	62	17	31	19	31	1.95
31605027--31605083	24	2.3	24	80	14	64	22	29	17	29	1.97
31605859--31605947	39	2.3	39	82	2	106	33	22	20	23	1.97
31605994--31606122	40	3.2	39	82	8	152	29	19	21	29	1.98
31606445--31606538	7	13.6	7	83	4	93	15	1	32	50	1.52
31608748--31608814	34	2.0	34	96	0	125	19	38	13	28	1.89
31616044--31616118	23	3.3	23	96	0	132	32	26	22	18	1.97
31616206--31616234	8	3.6	8	100	0	58	34	27	13	24	1.93
31622363--31622620	67	3.9	67	86	4	360	22	24	16	37	1.93
31630695--31630916	117	1.9	117	88	1	338	42	19	7	30	1.79
31633296--31633333	20	1.9	20	94	0	67	47	26	10	15	1.78
31637961--31637999	20	2.0	20	94	0	69	46	25	10	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637965--31638008	20	2.2	20	87	0	61	45	25	6	22	1.77
31640154--31640190	9	4.1	9	92	0	65	29	10	13	45	1.77
31640244--31640274	9	3.4	9	90	0	53	38	22	12	25	1.90
31641441--31641520	39	2.1	39	92	0	133	43	17	6	32	1.74
31641727--31641801	38	1.9	39	83	2	98	34	5	14	45	1.68
31642046--31642085	18	2.2	18	91	8	64	27	0	7	65	1.20
31652890--31652929	10	3.8	10	81	12	53	57	5	0	37	1.21
31666332--31666628	150	2.0	150	95	0	540	43	11	12	32	1.78
31673336--31673378	15	2.9	15	92	0	68	25	23	11	39	1.88
31675894--31675963	35	2.0	34	88	2	104	72	5	8	12	1.25
31675879--31675970	41	2.3	40	82	1	103	73	5	9	10	1.23
31675878--31675980	47	2.2	47	80	5	118	73	4	11	9	1.22
31676346--31676375	7	4.4	7	91	8	53	66	0	16	16	1.25
31676346--31676372	13	2.1	13	100	0	54	70	0	14	14	1.17
31676899--31677569	86	7.8	87	91	1	1037	30	23	22	24	1.99
31676899--31677568	173	3.9	174	90	1	1012	30	23	22	24	1.99
31677169--31677391	43	5.2	43	62	20	115	27	22	23	26	2.00
31676899--31677569	259	2.6	258	91	2	1087	30	23	22	24	1.99
31677818--31677915	43	2.2	44	80	7	110	33	22	20	23	1.97
31677818--31677972	44	3.5	44	77	6	136	30	19	23	26	1.98
31681576--31681612	19	1.9	19	88	0	56	67	5	0	27	1.12
31694402--31694451	20	2.5	20	75	15	59	12	20	8	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31694654--31694907	56	4.8	50	87	2	229	24	29	19	26	1.98
31694709--31694907	56	3.7	56	89	4	284	24	30	18	26	1.98
31697920--31697959	21	1.9	21	85	10	55	52	7	12	27	1.66
31704412--31704587	50	3.6	49	82	3	156	22	29	21	26	1.99
31704348--31704587	49	4.8	50	77	4	200	22	27	20	28	1.99
31707859--31709033	583	2.0	584	96	0	2181	31	21	15	30	1.95
31718816--31718973	26	6.2	26	71	13	87	59	5	6	29	1.43
31718885--31718933	21	2.3	21	89	3	71	63	2	2	32	1.17
31719098--31719165	25	2.7	26	81	9	77	61	2	4	30	1.30
31719124--31719189	21	3.0	22	86	13	91	65	0	1	33	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202