Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  147  of  202  ( 24201 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45796085--45796423
51
6.7
51
79
4
348
30
25
14
29
1.95
45800047--45800144
3
32.3
3
73
13
67
32
7
2
58
1.37
45800047--45800144
43
2.3
42
83
10
119
32
7
2
58
1.37
45800653--45800708
27
2.1
26
83
3
67
25
7
7
60
1.48
45813940--45814019
3
28.0
3
75
20
66
68
1
3
26
1.13
45813938--45814026
25
3.5
26
75
21
84
69
1
3
25
1.11
45813938--45814019
27
3.3
24
75
24
82
69
1
3
25
1.12
45814192--45814235
23
2.0
23
86
4
63
34
2
59
4
1.30
45820695--45820730
2
17.5
2
88
5
54
47
2
0
50
1.15
45822496--45822524
11
2.5
12
88
11
51
41
6
0
51
1.28
45825764--45825816
21
2.5
21
78
6
63
35
33
3
26
1.75
45831447--45831494
24
2.0
24
100
0
96
20
16
20
41
1.90
45837591--45837633
14
2.9
15
82
10
52
18
2
0
79
0.85
45837572--45837626
22
2.5
23
76
8
60
21
5
0
72
1.04
45848356--45848384
2
15.0
2
92
7
51
48
0
0
51
1.00
45849188--45849230
19
2.1
20
83
12
52
44
6
4
44
1.52
45852267--45852293
14
1.9
14
100
0
54
44
22
7
25
1.79
45852839--45852887
26
1.9
25
83
4
62
57
2
6
34
1.35
45858006--45858118
54
2.1
54
93
0
190
30
24
7
37
1.82
45864623--45864652
14
2.1
14
93
0
51
50
0
20
30
1.49
45874611--45874644
6
5.7
6
100
0
68
17
17
17
47
1.84
45876622--45876663
22
1.9
22
85
9
59
50
9
0
40
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45876979--45877026
24
2.0
24
91
0
78
52
10
4
33
1.55
45878945--45878992
24
2.0
24
91
0
78
52
10
4
33
1.55
45887996--45888035
19
2.0
20
95
4
73
45
5
10
40
1.60
45888221--45888266
18
2.3
21
78
17
62
60
2
4
32
1.28
45889963--45890007
23
1.9
24
81
4
56
22
0
13
64
1.28
45891595--45891625
2
15.5
2
100
0
62
48
0
0
51
1.00
45895845--45895912
23
3.2
23
68
23
76
26
14
17
41
1.88
45895840--45895919
40
2.0
40
100
0
160
25
15
17
42
1.88
45898470--45898974
50
9.9
50
79
8
475
27
20
27
23
1.99
45898575--45898870
156
1.9
156
88
1
450
26
21
29
22
1.99
45898477--45898910
206
2.1
206
94
0
760
26
21
28
23
1.99
45898480--45898904
156
2.7
150
76
11
430
27
21
28
23
1.99
45901225--45901309
30
2.8
31
77
13
97
35
18
17
28
1.94
45902654--45902721
30
2.2
30
82
12
77
32
0
4
63
1.14
45908029--45908056
9
3.1
9
100
0
56
57
10
0
32
1.33
45908097--45908124
9
3.1
9
100
0
56
57
10
0
32
1.33
45908026--45908208
68
2.7
68
97
1
343
48
9
3
38
1.54
45908197--45908238
16
2.6
16
92
0
66
42
7
2
47
1.43
45908212--45908272
22
2.8
22
84
0
77
47
1
1
49
1.21
45908026--45908230
68
3.2
66
92
6
307
48
9
3
39
1.52
45911289--45911368
29
2.8
29
81
7
83
22
27
23
26
2.00
45914985--45915055
31
2.2
34
85
7
94
21
4
1
73
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45915019--45915050
17
1.9
16
93
6
55
25
6
0
68
1.12
45917895--45918084
50
3.7
50
80
4
182
26
21
27
24
1.99
45925736--45925836
35
2.9
35
81
0
121
23
17
15
42
1.88
45927286--45927470
101
1.8
102
90
3
302
22
17
27
31
1.97
45927283--45927472
51
3.8
49
82
7
222
22
17
28
32
1.96
45931709--45931750
21
2.0
21
90
9
68
52
19
7
21
1.69
45935692--45935769
3
26.0
3
97
0
147
65
0
1
33
1.01
45943944--45944103
57
2.8
57
90
0
257
25
31
14
28
1.95
45949330--45949534
99
2.0
102
92
2
344
46
10
11
31
1.75
45949574--45949636
31
2.0
31
87
6
92
33
11
11
44
1.75
45954113--45954167
22
2.4
21
82
11
56
54
0
3
41
1.18
45955008--45955243
75
3.1
76
91
3
384
54
7
9
28
1.60
45955433--45955525
33
2.8
33
83
3
107
26
11
44
17
1.83
45958038--45958105
16
4.2
16
74
14
52
60
7
0
32
1.24
45958040--45958110
30
2.4
30
83
2
81
60
7
0
32
1.23
45958118--45958156
19
2.0
20
90
5
62
0
20
0
79
0.73
45958121--45958176
22
2.5
22
79
2
67
0
28
0
71
0.86
45958459--45958525
25
2.7
24
75
11
73
59
0
1
38
1.06
45960836--45960991
29
5.2
29
73
11
102
25
21
25
27
1.99
45960983--45961063
36
2.2
36
82
0
99
35
19
13
30
1.91
45962550--45962629
30
2.7
30
75
7
81
43
25
6
25
1.77
45962430--45962663
31
7.6
31
70
11
86
44
22
7
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45962414--45962933
184
2.8
184
90
1
783
44
21
8
26
1.80
45968875--45968934
30
2.0
30
100
0
120
36
13
6
43
1.70
45981342--45981547
102
2.0
102
96
0
376
21
17
15
45
1.85
45989553--45989624
32
2.2
32
85
7
92
45
2
1
50
1.25
45989585--45989624
16
2.5
15
84
11
53
47
2
0
50
1.14
45989913--45990032
63
1.9
61
86
8
170
32
11
13
42
1.80
45990154--45990247
33
2.9
32
82
7
100
64
4
7
23
1.37
45990387--45990430
23
1.9
23
86
9
63
27
2
0
70
0.99
45990795--45990842
20
2.5
20
86
3
71
31
0
8
60
1.26
45993621--45993664
21
2.0
22
87
12
65
68
2
6
22
1.25
45996242--45996354
40
2.9
39
86
4
156
36
24
20
18
1.95
45996404--45996553
41
3.7
41
93
0
264
23
21
25
30
1.99
45996792--45996828
14
2.6
14
91
0
56
21
0
32
45
1.52
45996877--45996909
14
2.3
15
94
5
59
30
0
33
36
1.58
45997049--45997096
7
7.0
7
80
4
53
16
2
43
37
1.60
45997049--45997096
13
3.5
13
80
5
51
16
2
43
37
1.60
45997046--45997093
20
2.3
20
75
3
51
18
2
41
37
1.63
45997285--45997340
21
2.7
21
85
0
76
17
0
50
32
1.47
45997288--45997338
14
3.6
14
89
2
66
17
0
50
31
1.46
45997294--45997393
14
7.0
14
76
5
67
19
0
43
38
1.51
45997287--45997393
7
15.1
7
78
11
58
19
0
42
37
1.52
45999628--45999658
2
15.5
2
100
0
62
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46000362--46000399
19
2.0
19
85
10
51
2
0
28
68
1.03
46001941--46002127
43
4.3
43
84
2
232
20
17
33
29
1.95
46005070--46005177
27
4.0
26
79
5
108
31
24
13
30
1.94
46015373--46015611
50
4.8
50
86
3
313
21
30
21
25
1.99
46022296--46022587
142
2.0
143
94
0
505
31
15
19
32
1.94
46023501--46023529
11
2.6
11
100
0
58
6
34
17
41
1.76
46030722--46030800
39
2.0
39
97
0
149
22
10
18
48
1.78
46040935--46041015
3
26.7
3
70
16
51
60
3
4
30
1.35
46044185--46044258
25
3.0
25
80
5
71
33
22
14
28
1.94
46045103--46045132
7
4.3
7
100
0
60
13
56
0
30
1.37
46051482--46051516
16
2.1
17
89
5
54
11
51
0
37
1.38
46056422--46056469
10
4.7
10
80
12
53
64
0
2
33
1.05
46058354--46058414
30
2.1
30
84
3
79
52
11
6
29
1.62
46069217--46069264
20
2.4
20
96
0
87
33
27
10
29
1.90
46071602--46071679
40
2.0
40
84
0
102
37
19
25
17
1.94
46081951--46081991
21
1.9
22
95
5
75
36
4
29
29
1.78
46082350--46082407
20
2.9
19
82
5
71
39
8
12
39
1.73
46084757--46084787
2
16.0
2
93
6
55
48
0
0
51
1.00
46087224--46087265
19
2.2
20
91
4
68
54
9
4
30
1.53
46087249--46087285
13
2.7
14
87
8
58
43
13
0
43
1.44
46090238--46090293
29
2.0
28
86
10
78
39
19
7
33
1.79
46090468--46090511
14
3.1
14
86
3
61
59
4
0
36
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46090472--46090555
25
3.2
25
75
11
78
54
2
1
41
1.21
46092356--46092394
17
2.2
18
86
13
55
74
2
17
5
1.12
46106078--46106113
16
2.2
16
95
0
63
41
5
30
22
1.76
46106093--46106183
44
2.0
46
91
4
150
27
4
29
38
1.76
46106093--46106200
46
2.5
44
84
11
136
29
3
30
36
1.75
46106342--46106380
17
2.5
15
84
15
60
61
0
0
38
0.96
46106347--46106380
17
2.0
17
100
0
68
58
0
0
41
0.98
46106413--46106452
20
2.0
21
85
5
55
60
5
0
35
1.19
46106420--46106499
28
2.8
28
81
11
92
56
1
0
42
1.07
46106431--46106532
44
2.3
41
75
16
98
50
4
0
44
1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202