genome.fa.s10.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  191  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58231868--58231903	14	2.6	14	86	0	54	66	0	2	30	1.06
58233898--58234437	192	2.8	200	82	5	554	34	15	16	33	1.90
58235394--58235420	2	13.5	2	100	0	54	48	0	0	51	1.00
58235486--58235567	31	2.6	31	80	0	92	26	14	10	47	1.77
58240263--58240372	44	2.5	42	74	20	102	41	1	0	55	1.16
58241580--58242089	193	2.8	184	86	5	678	31	16	19	32	1.93
58241731--58242192	193	2.4	193	86	0	636	31	15	17	35	1.91
58244556--58244580	2	12.5	2	100	0	50	48	0	0	52	1.00
58247164--58248424	241	5.3	241	88	1	1822	34	16	13	35	1.88
58249938--58249976	17	2.3	17	82	8	53	38	0	5	56	1.22
58256368--58256408	15	2.6	16	77	14	50	29	2	7	60	1.36
58257151--58257199	22	2.2	22	85	3	62	30	16	14	38	1.88
58257163--58257205	22	2.0	22	95	0	77	23	18	13	44	1.86
58264878--58264916	16	2.4	16	82	4	51	38	0	2	58	1.12
58265172--58265217	20	2.2	20	88	3	65	69	8	10	10	1.37
58265473--58265497	4	6.2	4	100	0	50	76	0	24	0	0.80
58265483--58265534	14	3.6	14	74	5	50	59	1	34	3	1.27
58265813--58265921	49	2.2	50	79	14	120	23	0	12	62	1.36
58269008--58269042	14	2.5	14	90	0	52	34	17	5	42	1.73
58270200--58270421	56	3.6	62	79	14	221	46	11	8	32	1.71
58271683--58271709	11	2.5	11	100	0	54	11	18	25	44	1.83
58272001--58272043	22	2.0	22	100	0	86	37	13	25	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58274084--58274150	33	2.0	33	100	0	134	56	8	2	31	1.45
58274146--58274181	4	8.5	4	88	11	54	0	25	0	75	0.81
58280415--58280464	10	4.7	11	75	9	50	66	6	6	22	1.36
58280420--58280460	21	2.0	21	95	0	73	63	7	7	21	1.45
58280415--58280479	34	2.0	32	87	6	94	64	6	6	23	1.39
58282059--58282104	22	2.1	21	84	4	56	41	2	2	54	1.25
58282184--58282223	21	1.9	21	94	0	71	42	10	5	42	1.60
58286476--58286500	5	5.0	5	100	0	50	20	0	0	80	0.72
58292603--58292661	3	19.7	3	100	0	118	67	0	0	32	0.91
58292851--58293040	3	63.7	3	70	11	104	58	3	5	32	1.37
58293039--58293067	3	9.7	3	100	0	58	34	0	31	34	1.58
58293680--58293718	6	6.5	6	84	0	51	82	0	17	0	0.68
58321696--58322110	100	4.2	100	89	1	566	30	23	20	25	1.98
58321727--58322111	50	7.7	50	69	2	254	31	23	19	25	1.98
58327293--58327351	27	2.2	26	81	3	73	79	13	5	1	0.97
58327784--58327829	20	2.3	20	81	7	58	76	4	19	0	0.96
58327787--58327841	12	4.9	11	78	10	58	76	3	18	1	1.02
58328179--58328374	108	1.8	108	87	4	297	25	16	10	48	1.77
58328860--58329077	44	5.0	44	76	7	192	27	14	27	31	1.95
58328857--58329049	88	2.2	88	84	6	241	27	15	25	31	1.95
58328857--58329071	88	2.4	89	82	6	215	27	14	26	31	1.95
58329223--58329685	50	9.3	50	68	3	268	29	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58329173--58329722	100	5.5	100	85	3	696	30	22	21	25	1.98
58329154--58329710	50	11.2	50	67	5	232	31	22	20	25	1.98
58329646--58329791	74	2.0	74	90	0	229	34	21	19	23	1.97
58329720--58329995	99	2.8	98	88	3	376	30	22	23	23	1.99
58329974--58330013	20	2.0	20	100	0	80	35	25	30	10	1.88
58329779--58330211	219	2.0	218	91	1	697	31	23	22	22	1.98
58330047--58330427	50	7.6	50	70	2	255	32	21	19	26	1.97
58329995--58330436	50	8.9	50	67	4	248	31	22	20	25	1.98
58329995--58330428	100	4.3	100	86	2	543	31	22	20	25	1.98
58334218--58334367	75	2.0	75	98	0	291	34	12	20	33	1.90
58334996--58335410	100	4.2	100	89	2	541	31	23	20	25	1.98
58335126--58335409	50	5.7	50	69	1	183	32	22	18	26	1.97
58335027--58335418	50	7.9	50	65	6	177	31	22	19	25	1.98
58340586--58340646	28	2.2	28	80	11	72	80	14	4	0	0.87
58341094--58341136	12	3.4	12	87	12	52	81	0	16	2	0.79
58341093--58341137	13	3.4	14	77	22	53	80	0	17	2	0.82
58341473--58341657	99	1.9	99	89	0	289	25	16	10	48	1.77
58342143--58342335	88	2.2	87	85	4	246	26	15	25	31	1.96
58342143--58342361	44	5.0	44	76	5	185	27	15	26	30	1.96
58342143--58342358	88	2.5	88	83	4	222	26	15	26	31	1.96
58342427--58343108	100	6.8	100	87	2	877	30	21	22	25	1.99
58342488--58343073	50	11.7	50	68	7	337	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58343032--58343182	74	2.0	74	90	0	239	33	21	21	23	1.97
58343106--58343597	99	4.9	101	85	3	622	30	22	22	25	1.99
58343112--58343594	50	9.7	50	68	6	264	30	22	21	25	1.99
58343106--58343596	199	2.5	199	87	2	700	30	22	22	25	1.99
58346607--58346756	75	2.0	75	98	0	291	34	12	20	33	1.90
58347263--58347323	16	3.4	18	69	13	54	27	1	0	70	0.97
58347244--58347334	34	2.7	32	74	17	85	26	1	2	70	1.06
58347881--58348065	50	3.7	50	71	0	145	31	23	20	24	1.98
58347931--58348214	50	5.7	50	70	1	192	32	22	17	26	1.97
58347801--58348217	100	4.2	101	86	3	526	31	22	19	25	1.98
58355166--58355292	52	2.5	52	89	3	186	29	30	14	25	1.95
58359617--58359741	51	2.4	52	91	1	198	29	29	14	26	1.95
58360970--58361137	52	3.3	51	86	4	216	26	13	30	28	1.94
58367425--58367503	40	2.0	41	87	2	115	49	20	7	22	1.74
58374569--58374873	46	6.6	46	81	13	315	34	14	22	27	1.94
58374621--58374825	52	4.1	52	83	8	262	35	15	22	26	1.94
58374575--58374836	98	2.7	97	90	1	407	34	14	23	27	1.94
58374800--58374908	37	3.0	37	95	2	195	35	16	22	24	1.95
58382356--58382482	29	4.4	29	65	18	86	58	3	2	36	1.27
58382353--58382493	45	3.3	40	71	15	131	59	4	2	34	1.29
58384302--58384327	3	8.7	3	100	0	52	69	0	0	30	0.89
58385210--58385264	27	2.1	26	83	10	67	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58385345--58385394	24	2.0	26	88	7	77	36	6	4	54	1.44
58385909--58385945	2	18.5	2	100	0	74	48	0	0	51	1.00
58410839--58410916	37	2.1	36	81	9	86	44	3	0	51	1.19
58411195--58411255	31	2.0	31	87	6	88	21	18	11	49	1.78
58420144--58420897	384	2.0	383	86	5	1078	37	17	15	29	1.91
58423354--58423425	36	2.0	36	94	0	126	45	23	12	18	1.83
58423653--58423777	62	2.0	63	87	1	180	32	8	16	43	1.78
58424465--58424497	17	1.9	17	93	0	57	15	18	12	54	1.71
58425379--58425419	18	2.2	18	86	4	55	31	2	2	63	1.20
58427467--58427509	21	2.0	21	100	0	86	41	18	18	20	1.90
58428732--58428772	19	2.2	19	100	0	82	36	4	14	43	1.67
58439133--58439159	14	1.9	14	100	0	54	44	0	0	55	0.99
58440269--58440298	7	4.1	7	91	8	51	16	0	0	83	0.65
58449941--58450174	109	2.2	109	86	5	325	33	11	13	41	1.80
58457085--58457143	3	19.7	3	100	0	118	67	0	0	32	0.91
58458184--58458238	2	27.5	2	100	0	110	49	0	0	50	1.00
58461901--58461975	32	2.5	30	77	14	82	42	1	14	41	1.54
58462818--58462855	19	2.0	19	94	0	67	55	5	0	39	1.23
58462951--58463020	30	2.3	30	92	0	113	55	5	11	27	1.57
58464094--58464191	39	2.4	42	79	5	103	19	28	22	29	1.98
58464492--58464538	22	2.1	22	100	0	94	40	23	8	27	1.83
58466319--58466481	36	4.6	36	71	7	118	20	17	23	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58467090--58467379	153	1.9	153	91	0	472	25	29	14	30	1.95
58467241--58467509	132	2.1	129	90	2	412	25	31	13	29	1.94
58479506--58479540	18	1.9	18	88	11	54	37	11	2	48	1.54
58479688--58479745	28	2.0	29	87	9	84	50	0	1	48	1.11
58481615--58481665	21	2.4	21	83	3	66	68	5	13	11	1.37
58497389--58497418	15	1.9	16	93	6	53	0	0	10	90	0.47
58500514--58500551	20	1.9	20	88	0	58	44	7	5	42	1.56
58504239--58504286	23	2.1	23	96	0	87	39	22	12	25	1.89
58510123--58510156	17	1.9	18	88	5	52	23	2	8	64	1.36
58517290--58517320	4	7.8	4	100	0	62	25	0	22	51	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202