genome.fa.s10.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  114  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35130679--35130735	27	2.1	27	90	3	89	38	5	5	50	1.47
35130820--35130893	35	2.0	38	87	7	109	50	8	14	27	1.71
35131695--35131723	12	2.3	13	94	5	51	31	24	10	34	1.89
35134694--35134745	24	2.2	24	82	6	61	32	30	3	32	1.76
35136043--35136117	27	2.6	29	82	16	77	36	20	1	42	1.60
35136294--35136348	24	2.3	23	81	9	65	27	23	23	25	2.00
35136287--35136398	25	4.6	24	77	11	95	29	20	25	25	1.99
35142182--35142267	45	1.9	45	92	0	145	33	22	16	27	1.95
35142269--35142464	51	3.9	50	80	4	232	30	28	17	23	1.97
35142276--35142460	101	1.8	101	91	3	309	30	27	17	23	1.97
35144425--35144470	23	2.0	23	100	0	92	26	43	0	30	1.55
35144685--35144722	19	2.0	20	84	5	51	31	7	2	57	1.41
35145160--35145217	13	4.5	13	77	0	62	50	1	15	32	1.55
35145160--35145231	26	2.7	26	91	4	117	51	2	15	30	1.57
35145208--35145283	40	1.9	40	83	5	100	40	2	17	39	1.63
35158254--35158325	22	3.3	22	94	0	117	30	16	27	25	1.97
35164560--35164634	19	3.8	19	89	6	105	36	17	10	36	1.84
35165079--35165254	44	4.0	44	90	0	255	27	26	18	27	1.98
35165315--35165456	43	3.3	42	65	7	104	16	26	29	27	1.97
35165265--35165530	88	3.0	88	93	0	460	18	24	28	28	1.98
35165292--35165518	44	5.2	44	64	4	152	20	24	28	27	1.99
35165530--35165823	44	6.7	44	75	6	274	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35165530--35165823	132	2.2	132	92	0	489	30	26	15	27	1.96
35167037--35167067	15	2.1	15	93	0	53	0	16	0	83	0.64
35167429--35167467	16	2.4	16	100	0	78	5	20	10	64	1.44
35171925--35171973	9	5.4	9	90	0	80	26	12	22	38	1.89
35171923--35171973	18	2.8	18	100	0	102	29	11	21	37	1.89
35172027--35172063	9	4.1	9	92	0	65	45	13	10	29	1.77
35172114--35172170	29	2.0	29	86	6	80	17	43	0	38	1.49
35172275--35172334	30	2.0	31	83	3	77	18	41	0	40	1.50
35173807--35173877	22	3.2	22	88	7	108	33	28	1	36	1.66
35173848--35173906	30	2.0	30	96	0	109	32	35	0	32	1.58
35173826--35173928	52	2.0	51	84	5	136	33	32	0	33	1.65
35173878--35173919	22	1.9	22	90	0	66	33	33	0	33	1.58
35174117--35174150	15	2.3	15	90	5	52	26	0	5	67	1.13
35176294--35176479	28	7.2	23	74	20	147	44	20	1	32	1.62
35176315--35176479	28	6.1	28	83	7	223	44	20	1	33	1.59
35176294--35176521	51	4.4	51	81	7	255	42	23	1	32	1.64
35176479--35176554	34	2.2	34	88	4	118	40	27	2	28	1.70
35179822--35180054	124	1.9	124	90	1	378	33	21	15	29	1.94
35179810--35180075	124	2.1	124	85	1	372	32	22	15	29	1.95
35181408--35181484	27	2.9	27	73	11	86	28	27	15	28	1.96
35182923--35183003	40	2.0	40	97	0	153	33	9	8	48	1.67
35186135--35186249	43	2.7	43	79	2	133	28	24	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35188220--35188287	30	2.3	30	89	0	100	38	11	26	23	1.89
35188276--35188341	29	2.2	30	86	2	89	43	15	24	16	1.86
35188239--35188471	89	2.6	89	82	2	288	40	13	24	21	1.89
35192803--35192873	30	2.4	30	90	0	106	39	14	19	26	1.90
35192825--35192922	49	2.0	49	100	0	196	32	16	20	30	1.94
35192882--35193049	30	5.6	30	76	9	139	38	13	25	23	1.91
35192803--35192951	79	1.9	79	90	0	235	36	14	20	28	1.92
35192941--35193073	30	4.5	30	78	6	146	40	14	25	19	1.89
35197187--35197326	50	2.8	52	84	5	196	31	29	15	24	1.95
35197182--35197326	51	2.9	50	84	4	184	30	28	15	24	1.96
35207073--35207101	13	2.1	14	93	6	51	86	0	0	13	0.58
35209844--35210042	54	3.7	54	89	1	319	36	15	23	25	1.93
35210167--35210263	29	3.3	29	76	5	106	19	13	25	41	1.88
35213681--35213774	45	2.1	44	84	5	118	31	3	26	38	1.72
35213915--35213956	15	2.7	16	82	14	52	52	2	0	45	1.13
35213924--35213965	15	2.9	15	82	10	52	52	0	0	47	1.00
35214034--35214085	15	3.6	15	80	12	56	53	1	0	44	1.11
35214274--35214325	15	3.6	15	80	12	56	53	1	0	44	1.11
35214394--35214445	15	3.6	15	80	12	56	53	1	0	44	1.11
35214514--35214565	15	3.6	15	80	12	56	53	1	0	44	1.11
35213918--35214690	120	6.4	120	96	0	1422	49	5	2	42	1.39
35214734--35214790	27	2.2	26	81	9	62	52	3	0	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35214706--35214893	90	2.1	91	89	1	288	48	4	2	44	1.36
35216289--35216315	11	2.5	11	100	0	54	51	18	7	22	1.70
35218069--35218094	6	4.3	6	100	0	52	50	0	0	50	1.00
35224916--35224961	18	2.6	18	86	3	58	23	0	2	73	0.94
35229389--35229423	2	17.5	2	100	0	70	51	0	0	48	1.00
35231136--35231299	84	1.9	85	83	8	210	42	10	4	42	1.60
35231117--35231299	85	2.2	81	80	9	208	44	9	4	40	1.58
35231504--35231555	19	2.8	19	88	2	79	75	1	3	19	1.06
35231834--35231918	19	4.3	20	73	16	70	36	4	0	58	1.19
35231881--35231944	19	3.4	18	76	8	56	32	6	1	59	1.32
35231834--35231945	20	5.7	19	72	6	62	33	5	0	59	1.26
35231882--35231997	19	6.4	17	66	23	51	32	6	0	60	1.27
35238314--35238532	39	5.6	39	90	2	314	31	2	19	46	1.63
35238418--35238510	8	11.9	8	71	13	50	32	2	18	47	1.60
35241486--35241516	13	2.4	13	94	0	53	51	35	0	12	1.40
35245911--35245982	36	2.0	36	91	0	117	26	16	20	36	1.94
35250679--35250746	30	2.3	29	92	2	109	57	17	2	22	1.53
35256157--35256398	50	4.7	50	83	5	243	22	29	21	26	1.99
35256177--35256398	100	2.2	102	83	6	270	21	29	22	26	1.99
35259171--35259213	17	2.5	17	96	0	77	20	32	25	20	1.97
35260626--35260765	25	5.6	25	82	4	131	32	21	22	22	1.98
35261986--35262249	30	8.9	30	74	8	157	39	12	26	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35261992--35262185	89	2.2	89	80	9	218	41	12	25	21	1.88
35261987--35262245	119	2.2	118	86	2	349	40	12	25	21	1.89
35262055--35262259	89	2.3	90	83	5	254	39	13	27	20	1.90
35264668--35264763	39	2.5	37	79	14	113	32	2	0	65	1.04
35264669--35264753	30	3.0	28	81	13	93	32	2	0	64	1.06
35264682--35264782	30	3.4	30	84	9	102	31	2	0	65	1.08
35264729--35264801	28	2.4	32	86	13	109	32	2	1	63	1.17
35264687--35264774	39	2.2	41	93	6	153	34	3	0	62	1.12
35266560--35266609	25	2.0	25	92	0	82	44	8	18	30	1.78
35275523--35275582	9	6.4	9	77	11	50	41	1	3	53	1.27
35275520--35275578	10	6.1	10	82	11	52	45	1	3	49	1.28
35275525--35275578	19	2.8	19	75	10	56	46	1	3	48	1.30
35277397--35277444	13	4.1	13	75	25	61	25	18	0	56	1.42
35277402--35277452	21	2.4	21	96	3	93	29	13	0	56	1.38
35283032--35283133	41	2.6	38	81	10	114	48	6	24	20	1.74
35283100--35283153	24	2.2	24	83	0	72	59	7	18	14	1.58
35283207--35283273	21	3.4	21	68	16	70	46	13	4	35	1.63
35283200--35283277	38	2.1	38	97	0	147	44	14	3	37	1.63
35283218--35283281	21	3.2	21	63	24	57	45	15	3	35	1.62
35286742--35286767	7	3.7	7	100	0	52	15	0	42	42	1.47
35290394--35290449	29	1.9	29	89	7	87	50	8	12	28	1.70
35292249--35292325	19	3.7	21	76	13	68	41	16	3	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35292285--35292357	19	3.8	19	92	0	128	38	16	8	36	1.79
35301492--35301654	42	3.9	41	81	6	166	42	18	21	17	1.89
35301492--35301649	84	1.9	84	84	2	210	43	17	22	17	1.88
35301485--35301687	21	9.7	21	66	5	97	42	17	20	19	1.89
35303934--35303992	29	2.1	27	81	9	66	25	11	18	44	1.84
35304233--35304301	22	3.1	22	87	0	102	31	27	1	39	1.66
35304254--35304359	52	2.1	51	85	1	140	33	31	1	33	1.69
35304403--35304455	18	3.0	18	75	2	54	39	0	0	60	0.97
35305537--35305568	7	4.6	7	100	0	64	28	0	12	59	1.34
35306737--35307583	28	28.9	28	78	15	704	45	23	0	30	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202