genome.fa.s10.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  118  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36478437--36478482	24	1.9	24	86	0	65	19	43	2	34	1.63
36478448--36478500	18	2.9	18	82	0	79	16	45	0	37	1.48
36478448--36478494	6	7.8	6	85	0	67	17	40	0	42	1.49
36478448--36478518	36	2.0	36	88	5	108	15	40	2	40	1.62
36478693--36478722	12	2.5	12	94	0	51	16	10	36	36	1.82
36483411--36483436	10	2.6	10	100	0	52	61	0	0	38	0.96
36483651--36483693	18	2.4	18	92	0	68	41	0	34	23	1.55
36489913--36490509	199	3.0	199	96	1	1079	29	15	16	38	1.89
36491096--36491134	2	19.5	2	100	0	78	48	0	0	51	1.00
36492184--36492214	9	3.4	9	90	0	53	25	12	22	38	1.90
36492352--36492412	30	2.0	30	90	0	95	19	42	1	36	1.61
36493525--36493558	16	2.1	17	88	5	52	29	5	2	61	1.34
36493659--36493687	12	2.3	13	94	5	51	37	0	3	58	1.15
36501151--36501212	26	2.4	26	81	5	72	37	24	24	14	1.93
36505760--36505823	8	7.4	8	83	10	56	70	0	1	28	0.97
36505771--36505840	9	7.4	9	83	12	70	71	0	1	27	0.94
36505770--36505840	28	2.5	27	84	6	88	70	0	1	28	0.96
36505757--36505868	37	3.1	36	80	10	111	66	0	1	32	1.03
36505814--36505876	10	6.7	10	77	17	64	57	0	1	41	1.08
36505962--36505994	11	3.1	11	86	4	50	36	0	0	63	0.95
36506236--36506435	87	2.3	88	85	6	264	29	10	23	37	1.88
36512046--36512081	18	1.9	19	94	5	65	50	2	27	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36521670--36521726	20	3.1	18	80	9	62	28	5	7	59	1.45
36522618--36522713	31	3.1	31	95	3	174	31	9	13	45	1.75
36528245--36528275	4	8.0	4	92	7	55	25	0	0	74	0.82
36531326--36531458	42	3.4	42	70	18	140	34	26	17	21	1.95
36531225--36531422	102	1.9	102	89	0	306	33	27	19	20	1.96
36531324--36531497	75	2.3	75	92	0	294	33	27	17	20	1.96
36531189--36531527	177	1.9	177	88	1	518	32	26	19	21	1.97
36538791--36539071	27	8.5	32	70	22	108	32	27	19	20	1.97
36538817--36538896	27	3.0	26	90	5	133	27	28	23	20	1.99
36538875--36539011	42	3.5	42	71	17	148	33	27	16	21	1.95
36538873--36539046	75	2.3	75	93	0	303	32	28	18	20	1.96
36567744--36567782	19	2.1	18	85	4	51	33	17	0	48	1.48
36568260--36568314	9	6.2	9	74	19	53	54	3	1	40	1.28
36568260--36568319	26	2.3	25	76	23	70	53	6	1	38	1.37
36569797--36569844	22	2.2	22	81	7	53	68	0	20	10	1.18
36570848--36571017	27	6.3	27	83	0	196	31	23	12	32	1.92
36573893--36573931	19	2.0	20	85	14	55	64	7	5	23	1.40
36574037--36574088	27	1.9	27	88	0	77	38	17	5	38	1.74
36577869--36577910	14	3.2	13	80	9	50	80	2	4	11	0.95
36581672--36581823	27	5.6	27	81	0	160	30	22	14	32	1.94
36581670--36581823	54	2.8	55	82	2	186	30	22	14	32	1.94
36584197--36584231	10	3.4	10	84	7	52	17	5	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36588452--36588493	4	10.5	4	84	0	57	21	28	2	47	1.63
36596469--36596720	42	6.1	42	87	1	294	21	20	22	36	1.96
36597418--36597687	140	1.9	142	85	9	379	47	3	11	38	1.57
36598369--36598421	21	2.5	22	87	9	74	18	5	1	73	1.12
36603182--36603229	25	1.9	25	83	8	62	18	6	10	64	1.45
36604082--36604142	32	1.9	32	86	0	86	47	11	16	24	1.79
36612379--36612482	20	5.2	20	75	4	84	10	29	20	39	1.86
36612353--36612443	40	2.3	40	86	0	128	13	27	21	37	1.91
36613844--36614084	50	4.8	50	89	0	356	20	33	22	23	1.97
36614422--36614494	30	2.6	29	77	14	80	36	20	6	35	1.80
36617002--36617030	6	5.0	6	95	4	51	68	0	0	31	0.89
36617193--36617287	28	3.0	33	73	16	92	32	24	21	22	1.98
36617629--36618044	27	15.4	27	78	6	353	17	20	20	42	1.90
36625391--36625446	20	2.8	21	78	15	64	25	30	12	32	1.92
36625413--36625469	20	2.8	20	81	0	60	28	24	14	33	1.94
36633811--36633867	24	2.4	23	80	11	62	68	3	17	10	1.33
36638627--36639237	303	2.0	303	98	0	1186	38	14	22	25	1.91
36640326--36640376	21	2.4	21	90	0	75	33	31	15	19	1.93
36657650--36657712	24	2.6	25	75	12	67	23	23	20	31	1.98
36657694--36657806	27	4.4	25	83	6	84	20	21	23	34	1.97
36657732--36657807	27	2.8	26	92	4	116	19	22	27	30	1.98
36660245--36660277	16	2.1	16	88	5	50	45	6	0	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36662893--36662982	46	2.0	46	90	0	144	58	11	6	23	1.55
36675140--36675308	74	2.3	75	91	1	277	42	8	13	35	1.75
36682550--36682583	12	2.9	12	95	4	61	64	0	0	35	0.94
36685023--36685270	50	4.9	50	81	6	241	27	21	27	23	1.99
36686764--36686899	69	2.0	69	91	0	218	27	20	10	41	1.84
36690760--36690975	44	4.7	44	70	16	123	27	21	19	31	1.98
36690704--36691409	142	5.0	142	95	0	1216	26	22	19	32	1.97
36690897--36691399	44	10.8	44	67	17	237	26	22	19	31	1.98
36691323--36691415	44	2.1	44	84	4	116	26	21	22	29	1.99
36705385--36705420	14	2.6	14	91	4	56	63	0	8	27	1.23
36711128--36711171	3	14.7	3	100	0	88	31	0	0	68	0.90
36713853--36714239	51	7.7	50	80	7	367	29	26	16	28	1.96
36713857--36714239	102	3.8	102	86	5	433	29	26	15	28	1.96
36723968--36724013	23	2.0	23	100	0	92	21	13	17	47	1.81
36732745--36732810	30	2.2	30	88	0	96	22	33	28	15	1.94
36760523--36761031	27	18.9	27	81	4	521	20	16	21	41	1.90
36760532--36761031	215	2.3	215	85	2	648	20	17	20	41	1.90
36760535--36761031	242	2.1	242	87	1	728	20	17	20	42	1.90
36771217--36771298	6	13.3	6	78	5	56	21	3	3	70	1.18
36771217--36771283	19	3.6	19	77	2	73	22	4	1	71	1.12
36771218--36771285	25	2.7	25	86	0	91	23	4	1	70	1.13
36771254--36771295	19	2.3	19	87	4	59	26	2	4	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36778331--36778400	16	4.1	16	71	16	59	52	1	4	41	1.30
36785570--36785605	16	2.2	17	90	5	56	11	52	0	36	1.37
36795297--36795370	21	3.5	20	76	20	62	27	8	8	56	1.56
36797123--36797156	16	2.1	16	94	0	59	20	11	20	47	1.81
36801576--36801645	7	9.4	7	86	6	68	81	14	1	2	0.88
36801576--36801645	8	8.2	8	76	17	61	81	14	1	2	0.88
36801576--36801645	26	2.7	25	83	16	97	81	14	1	2	0.88
36801576--36801637	20	3.2	20	82	14	69	80	14	1	3	0.91
36802071--36802209	48	2.9	47	82	7	156	47	20	20	10	1.80
36803411--36804268	51	16.8	51	82	3	895	30	17	23	28	1.97
36804027--36804309	150	1.9	150	87	1	415	31	16	22	28	1.96
36804289--36804396	44	2.5	44	83	6	121	30	21	18	29	1.97
36809282--36809332	25	2.0	25	96	0	93	41	25	11	21	1.87
36811150--36811187	7	5.7	7	84	12	53	13	47	0	39	1.42
36811150--36811187	12	2.9	14	84	11	53	13	47	0	39	1.42
36815272--36815326	25	2.2	25	78	9	60	50	21	10	16	1.75
36822800--36822854	25	2.2	25	80	6	67	50	29	10	9	1.68
36831238--36831298	30	2.0	30	87	0	86	42	18	4	34	1.71
36831456--36831499	22	2.1	22	80	12	58	72	2	2	22	1.07
36832028--36832059	13	2.5	13	100	0	64	50	0	6	43	1.27
36832343--36832392	22	2.3	22	89	6	75	44	12	12	32	1.78
36834128--36834167	16	2.5	16	84	8	55	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36834238--36834277	20	2.0	20	85	14	55	40	5	0	55	1.22
36834641--36834683	6	7.7	6	89	5	56	79	0	2	18	0.85
36834624--36834686	22	2.9	22	72	11	58	73	0	1	25	0.93
36835461--36835489	14	2.1	14	93	6	51	55	0	0	44	0.99
36835476--36835583	33	3.5	31	69	20	84	43	0	0	54	1.12
36835464--36835604	59	2.4	56	86	8	185	45	2	0	51	1.18
36839629--36839677	16	3.1	16	81	0	62	32	26	4	36	1.75
36843798--36843870	38	1.9	38	94	0	128	34	12	12	41	1.80
36853310--36853359	25	2.0	25	100	0	100	24	24	8	44	1.80
36861509--36861842	50	6.6	51	77	8	263	27	19	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202