genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  128  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39542786--39548115	169	31.6	169	85	1	6780	27	25	16	29	1.97
39541880--39543743	944	2.0	944	84	3	2460	28	24	17	29	1.97
39546826--39546924	51	1.9	51	83	0	126	24	25	20	30	1.99
39549369--39550926	169	9.2	169	84	2	1948	27	25	17	29	1.97
39556313--39557050	169	4.4	169	82	3	862	29	24	17	28	1.98
39557627--39558655	169	6.1	169	84	1	1244	28	26	16	28	1.97
39558559--39558701	67	2.1	67	85	0	196	25	28	18	27	1.98
39558391--39558886	236	2.1	236	86	2	701	26	26	16	30	1.97
39558620--39561189	169	15.2	169	83	2	3071	27	25	16	29	1.97
39558214--39559042	405	2.0	405	83	3	1060	27	26	17	29	1.98
39558046--39559175	574	2.0	574	87	1	1649	27	26	16	29	1.97
39557969--39559398	743	1.9	743	86	3	2009	27	25	16	29	1.97
39561056--39561236	51	3.5	51	74	0	191	28	26	17	27	1.98
39561051--39561285	102	2.3	102	96	0	425	29	25	17	27	1.97
39560902--39561460	271	2.1	271	89	0	859	28	25	17	28	1.98
39561123--39561285	51	3.2	51	75	0	200	31	25	15	28	1.96
39560536--39561893	609	2.2	609	88	1	1977	27	25	18	28	1.98
39560713--39562405	440	3.8	439	76	9	1642	27	25	18	28	1.98
39561175--39561792	169	3.7	169	89	0	896	27	25	17	28	1.98
39561654--39561899	51	4.8	51	70	4	190	25	23	22	28	1.99
39561654--39562002	102	3.4	102	89	0	484	26	24	21	27	1.99
39561050--39562391	711	1.9	711	89	0	2074	27	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39562028--39562130	51	2.0	51	84	0	134	25	24	19	31	1.98
39561859--39562405	169	3.2	169	91	0	853	25	25	19	29	1.98
39562848--39562879	16	2.0	16	93	0	55	25	15	0	59	1.36
39592334--39592369	17	2.1	18	89	5	56	63	5	22	8	1.43
39605374--39605404	8	3.9	8	95	0	53	16	9	25	48	1.76
39621841--39622656	407	2.0	408	83	1	1028	35	18	24	21	1.96
39635965--39636018	27	2.0	27	100	0	108	40	22	18	18	1.91
39636179--39636255	26	3.0	26	77	7	84	20	18	24	36	1.95
39643732--39643815	27	3.1	27	84	1	107	44	20	16	19	1.87
39643732--39643829	27	3.7	27	81	6	101	41	22	15	20	1.89
39645532--39645566	12	2.9	12	86	0	52	37	11	2	48	1.54
39651521--39651554	16	2.2	16	89	5	52	26	8	26	38	1.85
39664717--39664750	17	2.0	17	94	0	59	29	32	11	26	1.92
39666796--39666885	23	3.9	23	77	2	83	45	11	7	35	1.69
39666849--39666898	23	2.2	23	88	0	73	44	14	6	36	1.69
39678744--39678915	50	3.5	50	77	4	161	28	22	26	22	1.99
39679140--39679178	20	2.0	20	89	0	60	53	2	25	17	1.56
39685761--39685953	50	3.7	52	79	6	205	26	23	28	21	1.99
39685761--39686002	50	4.7	50	79	4	200	27	22	27	22	1.99
39699529--39699631	23	4.5	23	85	7	120	47	14	4	33	1.65
39703296--39703589	154	1.9	154	90	0	471	22	18	19	40	1.92
39708707--39708805	48	2.1	48	100	0	198	41	17	6	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39710617--39710679	9	6.6	10	70	15	53	30	1	1	66	1.10
39710617--39710679	18	3.3	19	72	20	60	30	1	1	66	1.10
39710719--39710784	32	2.1	32	97	0	123	21	13	12	53	1.72
39717032--39717068	14	2.6	14	86	4	56	89	8	2	0	0.58
39718361--39718396	17	2.1	17	89	5	54	19	2	11	66	1.35
39720279--39720610	165	2.0	165	95	0	601	30	12	20	36	1.90
39728494--39728684	50	3.8	49	76	14	190	29	26	18	25	1.98
39748696--39748811	38	3.0	39	88	5	164	35	6	12	45	1.68
39756398--39756445	24	2.0	24	91	0	78	16	10	22	50	1.76
39762909--39762993	25	3.4	25	85	1	109	27	21	20	31	1.97
39764682--39764741	30	2.0	31	86	3	86	40	0	40	20	1.52
39764816--39764876	30	2.0	31	87	9	90	37	0	42	19	1.52
39764925--39764961	9	4.1	9	92	0	65	29	10	13	45	1.77
39765015--39765045	9	3.4	9	90	0	53	38	22	12	25	1.90
39773148--39773294	28	5.3	28	83	4	154	32	16	25	25	1.96
39778967--39779051	22	3.9	22	87	0	125	28	14	27	30	1.95
39780135--39780519	29	13.2	29	74	5	276	37	11	26	23	1.89
39780135--39780519	58	6.6	58	80	5	321	37	11	26	23	1.89
39780135--39780519	87	4.4	86	79	6	319	37	11	26	23	1.89
39784531--39784564	17	1.9	18	94	5	61	41	5	14	38	1.70
39787920--39788031	29	3.9	28	84	4	134	36	13	29	20	1.91
39787909--39788031	59	2.1	59	87	3	176	37	13	27	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39793404--39793516	40	2.8	40	83	0	136	32	19	27	20	1.97
39796805--39796859	16	3.2	18	80	19	64	25	0	27	47	1.52
39807507--39807595	44	2.0	44	93	4	153	34	12	21	31	1.90
39813305--39813423	27	4.4	27	87	6	161	19	20	20	40	1.92
39813305--39813423	54	2.2	54	92	3	195	19	20	20	40	1.92
39827417--39827562	38	3.8	39	78	9	131	45	11	8	34	1.72
39829910--39830138	112	2.0	112	93	0	386	22	24	17	35	1.95
39833916--39834004	38	2.3	39	84	9	121	46	11	7	34	1.69
39837713--39837745	17	1.9	17	88	11	50	12	12	27	48	1.76
39841449--39841483	17	2.1	17	88	0	52	8	14	20	57	1.63
39851280--39851368	21	4.1	21	67	13	63	6	34	19	39	1.78
39853687--39853850	72	2.3	72	89	2	240	26	5	12	56	1.57
39855923--39855983	13	4.7	13	84	8	79	40	27	4	26	1.76
39858568--39858741	35	5.0	35	88	1	242	22	25	17	33	1.96
39859375--39859475	35	2.9	36	91	5	163	21	24	19	33	1.97
39861224--39861283	21	2.8	21	69	2	57	30	1	6	61	1.31
39862680--39862746	28	2.3	30	80	10	77	37	5	2	53	1.41
39866673--39866705	11	2.9	12	86	13	52	42	9	0	48	1.35
39866717--39866754	2	19.0	2	100	0	76	50	0	0	50	1.00
39867509--39867534	13	2.0	13	100	0	52	53	15	15	15	1.73
39873546--39873730	50	3.7	50	91	0	289	26	20	30	22	1.98
39882546--39882590	22	2.0	22	95	0	81	46	20	13	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39888065--39888197	54	2.4	54	81	8	142	33	24	16	26	1.96
39895755--39895782	2	14.0	2	100	0	56	50	0	0	50	1.00
39896876--39896942	28	2.4	28	80	10	73	38	4	2	53	1.36
39898821--39898907	28	3.2	28	74	6	81	37	35	6	19	1.79
39898858--39898919	13	4.8	13	73	15	56	40	37	6	16	1.74
39900331--39900373	18	2.4	17	88	11	68	48	2	23	25	1.62
39900351--39900400	24	2.1	24	88	0	73	48	0	26	26	1.52
39912282--39912357	33	2.2	34	86	4	100	46	18	6	28	1.74
39912775--39912829	24	2.2	24	90	3	83	38	0	40	21	1.54
39914760--39914798	14	2.9	14	96	3	71	38	12	12	35	1.82
39919686--39919717	12	2.7	12	95	0	55	71	0	0	28	0.86
39919747--39919780	2	17.0	2	100	0	68	50	0	0	50	1.00
39924884--39925080	98	2.0	98	92	2	324	36	22	10	30	1.88
39927698--39927727	14	2.1	14	93	0	51	53	6	3	36	1.44
39928508--39928578	37	1.9	36	86	11	99	52	2	2	42	1.31
39935623--39936602	44	22.5	44	70	9	503	28	24	18	28	1.98
39935623--39936602	88	11.2	87	75	8	575	28	24	18	28	1.98
39935407--39935814	217	1.9	217	82	3	516	29	24	18	27	1.98
39935407--39936445	305	3.4	305	95	0	1826	28	24	18	28	1.98
39935713--39936341	217	2.9	217	80	6	598	28	24	18	28	1.98
39936008--39936428	217	1.9	217	83	4	537	29	25	16	28	1.97
39936594--39936928	128	2.6	128	88	0	508	26	24	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39938183--39938223	14	2.9	15	78	10	50	17	12	0	70	1.16
39938185--39938223	20	1.9	21	94	5	71	17	12	0	69	1.19
39939111--39939171	26	2.3	26	75	5	61	9	11	8	70	1.34
39939150--39939183	12	2.8	12	90	4	50	11	11	8	67	1.42
39947526--39947713	47	4.0	47	88	3	281	34	14	19	31	1.92
39947462--39947713	94	2.6	94	86	6	348	34	14	21	30	1.93
39952370--39952715	46	7.3	46	88	6	453	34	15	21	28	1.94
39952679--39952824	37	4.0	37	95	1	251	37	16	21	24	1.93
39962833--39962871	21	1.9	20	89	5	60	58	0	0	41	0.98
39969810--39969856	22	2.3	20	79	20	53	74	4	4	17	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202