genome.fa.s10.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  151  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46994361--46994668	96	3.3	96	74	11	352	29	21	18	30	1.97
46994315--46994671	181	2.0	181	93	0	606	29	20	18	31	1.96
47002235--47002269	17	2.1	17	94	0	61	5	34	31	28	1.81
47007292--47007367	6	12.7	6	74	0	62	59	7	3	28	1.44
47007292--47007367	12	6.3	12	81	0	80	59	7	3	28	1.44
47007292--47007367	24	3.2	24	82	0	89	59	7	3	28	1.44
47009280--47009361	34	2.4	34	87	0	110	40	26	13	19	1.89
47011646--47011676	15	2.1	15	100	0	62	22	32	6	38	1.80
47039371--47039415	16	2.8	16	82	0	54	60	2	4	33	1.29
47040009--47040065	22	2.6	21	80	5	60	64	0	3	31	1.10
47040089--47040120	16	2.0	16	100	0	64	31	0	6	62	1.20
47040376--47040452	27	2.8	26	77	15	75	29	3	3	62	1.31
47040434--47040471	20	1.9	20	88	0	58	26	5	2	65	1.27
47040569--47040766	90	2.2	90	85	2	272	32	9	22	35	1.85
47063322--47063499	49	3.6	49	79	5	153	26	20	29	23	1.99
47070999--47071098	51	2.0	51	93	0	173	24	16	26	34	1.95
47072109--47072555	41	10.9	41	90	0	554	20	19	31	28	1.97
47072639--47072693	25	2.2	26	81	9	71	60	7	10	21	1.55
47072879--47072939	14	4.3	15	78	15	67	27	0	32	39	1.57
47072909--47072984	21	3.6	21	75	12	66	25	0	38	36	1.56
47072922--47072976	14	3.9	14	75	2	56	23	0	38	38	1.55
47072923--47073004	29	2.9	28	85	5	110	29	0	34	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47072920--47073005	7	12.0	7	74	14	50	29	0	34	36	1.58
47072937--47073002	22	3.1	22	80	4	64	28	0	34	36	1.58
47072965--47073010	15	3.1	15	76	14	51	36	0	23	39	1.55
47073046--47073093	25	1.9	25	95	0	87	35	0	2	62	1.07
47073248--47073285	14	2.7	15	88	12	62	26	0	31	42	1.56
47073304--47073343	21	1.9	21	94	0	71	25	0	45	30	1.54
47073310--47073344	14	2.5	14	90	0	52	25	0	45	28	1.54
47073693--47073735	19	2.2	20	87	4	61	79	4	2	13	1.00
47078961--47079276	43	7.4	44	77	7	285	28	18	29	24	1.98
47078961--47079233	129	2.1	127	81	4	316	28	17	29	23	1.97
47079433--47079475	22	2.0	22	85	0	59	44	25	18	11	1.84
47079735--47079769	17	2.1	17	88	0	52	42	2	17	37	1.64
47080870--47080897	12	2.3	12	100	0	56	28	42	21	7	1.79
47083259--47083325	30	2.2	30	83	0	80	20	19	35	23	1.95
47094762--47094843	20	4.1	19	76	9	83	35	15	32	15	1.90
47105932--47105965	16	2.1	16	100	0	68	44	11	32	11	1.77
47111753--47111792	19	2.2	18	86	4	53	62	10	2	25	1.39
47112715--47112786	22	3.3	22	94	0	117	30	16	27	25	1.97
47118815--47118852	2	19.5	2	94	5	69	50	0	0	50	1.00
47121806--47121873	31	2.2	30	82	7	75	26	8	20	44	1.81
47124240--47124267	2	14.0	2	100	0	56	50	0	0	50	1.00
47129251--47129290	18	2.1	20	86	9	57	20	5	0	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47129265--47129339	3	25.0	3	71	15	57	29	4	2	64	1.26
47129254--47129339	15	5.6	14	73	21	50	27	4	2	65	1.25
47129254--47129326	18	4.1	18	73	19	55	27	2	2	67	1.18
47129287--47129348	15	4.3	15	76	13	51	33	4	3	58	1.36
47136560--47136630	26	2.7	26	82	4	99	22	18	30	28	1.97
47145984--47146030	26	1.9	26	83	12	64	14	8	4	72	1.24
47158417--47158453	12	2.7	14	80	20	51	18	21	29	29	1.97
47159859--47159891	17	1.9	17	88	11	50	42	12	0	45	1.41
47167185--47167310	27	4.7	27	82	2	155	34	15	23	26	1.95
47167374--47167432	24	2.5	24	83	5	75	22	6	25	45	1.76
47167527--47167595	26	2.6	26	86	2	84	18	23	21	36	1.95
47167548--47167598	26	2.0	26	96	0	93	19	23	21	35	1.96
47167624--47167788	32	5.2	32	72	9	113	21	21	20	35	1.96
47167673--47167818	64	2.3	64	86	2	195	19	21	21	36	1.95
47167601--47167818	32	6.8	32	72	5	109	20	22	21	35	1.96
47167830--47167876	22	2.1	22	84	0	58	21	14	14	48	1.80
47167888--47167938	26	2.0	26	88	0	75	19	27	19	33	1.96
47173529--47173735	106	2.0	105	99	0	405	36	4	14	43	1.67
47174017--47174063	20	2.3	20	92	0	76	51	4	25	19	1.65
47174688--47174738	24	2.1	24	85	7	68	49	1	29	19	1.60
47182207--47182334	35	3.5	35	74	15	132	58	3	0	37	1.17
47182271--47182295	8	3.1	8	100	0	50	76	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47182200--47182342	76	1.9	76	98	0	277	58	3	0	38	1.15
47201575--47201603	1	29.0	1	100	0	58	0	0	0	100	0.00
47204617--47204684	27	2.5	27	100	0	136	29	5	19	45	1.73
47205094--47205133	20	2.0	20	90	0	62	55	0	0	45	0.99
47205124--47205190	16	4.2	15	73	19	55	62	0	1	35	1.04
47205146--47205189	18	2.6	17	82	7	54	70	0	2	27	0.99
47213226--47213257	16	2.0	16	93	0	55	53	9	6	31	1.58
47213881--47213971	47	1.9	47	88	4	139	18	15	5	60	1.54
47213986--47214079	46	2.0	47	83	6	120	17	18	6	58	1.59
47213879--47214077	106	1.9	107	86	5	287	17	17	5	59	1.56
47214170--47214219	19	2.6	19	77	0	55	10	36	0	54	1.34
47226035--47226291	23	11.0	23	80	4	291	38	19	13	28	1.89
47226054--47226294	70	3.4	70	93	1	428	39	19	12	28	1.88
47229457--47229489	15	2.2	15	100	0	66	60	12	15	12	1.59
47230476--47230528	12	4.5	12	75	11	56	18	11	7	62	1.52
47230476--47230528	23	2.2	24	83	9	65	18	11	7	62	1.52
47230552--47230644	47	2.0	47	100	0	186	20	21	19	38	1.93
47239165--47239238	27	2.7	26	83	4	76	29	20	29	20	1.97
47245116--47245161	23	2.0	23	100	0	92	39	21	17	21	1.93
47255824--47255868	20	2.3	20	96	3	83	28	31	13	26	1.94
47256468--47256511	23	1.9	23	86	9	63	9	0	34	56	1.31
47284121--47284145	12	2.1	12	100	0	50	0	8	0	92	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284509--47284549	17	2.4	17	100	0	82	34	4	26	34	1.78
47294978--47295029	8	7.0	8	74	24	51	34	0	1	63	1.06
47294978--47295029	14	3.6	14	76	19	61	34	0	1	63	1.06
47299159--47299211	17	3.1	16	76	10	52	56	1	0	41	1.10
47309771--47309828	21	3.1	18	77	15	64	70	1	24	3	1.12
47319633--47319702	22	3.2	21	83	4	86	32	17	15	34	1.91
47322650--47322747	51	1.9	51	95	0	178	34	9	6	50	1.59
47342977--47343005	13	2.1	14	93	6	51	13	0	20	65	1.26
47349813--47349861	12	4.1	12	75	19	57	48	0	4	46	1.20
47350363--47350410	24	2.0	24	95	0	87	27	12	14	45	1.81
47358899--47359214	45	7.0	45	88	0	461	30	24	15	28	1.96
47368053--47368077	13	1.9	13	100	0	50	48	20	8	24	1.76
47368502--47368544	22	2.0	22	100	0	86	37	13	25	23	1.92
47374056--47374116	26	2.4	26	83	2	79	45	9	6	37	1.63
47377045--47377079	16	2.2	16	89	0	52	62	22	0	14	1.31
47379674--47379743	29	2.3	31	85	4	90	52	12	12	21	1.72
47381492--47381538	20	2.3	20	88	0	67	61	2	4	31	1.27
47381564--47381606	10	4.4	10	76	5	52	65	0	0	34	0.93
47381797--47381900	20	5.3	19	72	15	86	28	7	0	63	1.22
47385385--47385418	16	2.1	17	88	5	52	41	8	17	32	1.80
47388878--47388954	37	2.1	37	83	9	95	57	6	5	31	1.46
47392277--47392337	26	2.3	26	91	0	95	37	9	22	29	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47395486--47395518	17	2.0	17	88	5	50	42	6	0	51	1.26
47397193--47397217	2	12.5	2	100	0	50	48	0	0	52	1.00
47399962--47400002	15	2.5	17	80	11	59	63	2	2	31	1.20
47401074--47401107	10	3.5	10	96	4	61	26	0	0	73	0.83
47401074--47401113	10	4.1	9	93	6	53	30	0	0	70	0.88
47405360--47405426	29	2.3	29	82	5	73	22	16	16	44	1.86
47405602--47405949	123	2.8	123	92	0	579	31	15	20	32	1.94
47409051--47409075	10	2.5	10	100	0	50	48	0	8	44	1.32
47409095--47409286	55	3.0	65	78	19	251	41	5	14	38	1.68
47409160--47409305	55	2.6	55	94	4	247	43	5	13	37	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202