genome.fa.s10.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  60  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17712654--17712753	39	2.6	39	80	4	114	50	8	4	38	1.51
17721030--17721079	18	2.8	19	82	11	61	50	4	0	46	1.20
17728291--17728339	17	2.9	17	90	0	71	30	18	6	44	1.74
17731249--17731341	48	1.9	48	89	4	143	50	4	20	24	1.66
17736342--17738211	44	43.7	43	71	9	750	30	20	23	25	1.99
17736337--17737147	131	6.2	131	78	5	696	29	20	24	25	1.99
17736342--17738080	167	10.1	175	76	7	1019	30	20	23	25	1.99
17736386--17737114	219	3.3	216	77	5	605	29	20	24	24	1.99
17736993--17737534	127	4.3	127	92	0	823	30	19	24	25	1.98
17736998--17737823	127	6.5	124	86	6	712	30	19	24	25	1.98
17736692--17738121	294	4.8	294	83	4	1414	30	20	23	25	1.99
17736776--17738227	421	3.4	421	90	2	2097	30	20	23	25	1.98
17737503--17737950	127	3.5	127	93	0	736	30	21	22	25	1.99
17737757--17738121	167	2.2	167	91	1	597	29	21	22	26	1.99
17737924--17738227	127	2.4	127	94	0	536	30	20	22	26	1.98
17737507--17738082	254	2.3	251	83	3	672	30	20	23	25	1.99
17737336--17738271	294	3.2	293	87	2	1292	30	21	22	26	1.99
17739965--17739995	12	2.6	12	94	0	53	32	9	0	58	1.31
17740662--17740873	105	2.0	105	85	6	286	31	17	16	34	1.92
17741818--17741874	30	1.9	30	89	3	89	40	3	24	31	1.72
17742086--17742117	13	2.5	13	94	0	55	31	0	12	56	1.37
17742212--17742461	50	4.8	50	87	4	329	28	23	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17742216--17742462	101	2.4	104	86	6	331	27	23	27	21	1.99
17748723--17748761	20	1.9	21	89	5	62	53	2	0	43	1.14
17750763--17750824	30	2.1	30	93	0	106	58	12	3	25	1.50
17756009--17756041	5	6.6	5	100	0	66	21	57	0	21	1.41
17766008--17766038	12	2.6	12	94	0	53	41	3	3	51	1.34
17766958--17766985	5	5.6	5	100	0	56	39	0	0	60	0.97
17767048--17767102	21	2.7	20	88	8	83	32	5	12	49	1.64
17776056--17776100	21	2.2	20	84	11	56	71	2	0	26	0.98
17776054--17776094	14	3.0	14	82	7	57	70	2	0	26	0.99
17776718--17776758	19	2.2	18	91	4	64	53	4	0	41	1.22
17776744--17776782	16	2.5	15	88	12	60	56	0	0	43	0.99
17778678--17778715	16	2.4	16	82	4	51	65	0	0	34	0.93
17783286--17783396	27	3.9	27	78	13	123	31	29	24	14	1.94
17783262--17783394	60	2.2	60	93	0	221	33	29	22	15	1.94
17783315--17783573	103	2.5	103	92	0	421	33	28	19	17	1.95
17784882--17784948	35	1.9	35	84	0	89	40	34	17	7	1.78
17788339--17788377	19	2.1	19	85	9	53	48	0	5	46	1.24
17808014--17808064	23	2.2	23	89	6	77	29	9	19	41	1.84
17809029--17809339	169	1.8	169	83	1	417	44	12	11	32	1.78
17812855--17812909	26	2.1	26	93	0	92	49	5	10	34	1.61
17813265--17813356	19	4.8	19	94	0	166	38	16	8	36	1.79
17813242--17813356	38	2.9	38	93	5	185	39	16	7	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17813903--17814244	45	7.8	45	73	11	244	25	23	21	29	1.99
17813853--17814387	217	2.5	218	85	2	664	26	22	20	31	1.98
17814573--17814682	50	2.2	50	80	3	123	28	21	23	26	1.99
17814874--17815015	43	3.3	43	64	3	113	17	28	28	25	1.98
17814825--17815391	88	6.4	88	89	0	864	20	23	27	27	1.99
17816608--17816646	19	2.1	18	85	4	51	0	17	0	82	0.68
17816596--17816644	14	3.3	14	81	13	62	2	18	0	79	0.83
17821924--17821989	6	10.7	6	95	4	114	80	0	0	19	0.72
17822448--17822520	19	3.8	19	96	0	137	36	16	9	36	1.81
17822613--17822653	19	2.1	20	86	4	57	17	2	12	68	1.31
17840113--17840157	21	2.1	21	100	0	90	22	13	24	40	1.90
17841313--17841388	13	5.8	13	93	0	134	39	27	9	23	1.85
17844632--17844682	12	4.1	13	75	14	54	35	0	41	23	1.55
17845772--17845853	27	3.0	27	89	0	128	46	23	13	17	1.83
17845773--17846379	54	11.8	53	77	12	529	43	22	15	17	1.87
17845832--17845872	20	2.0	20	95	0	73	41	31	9	17	1.82
17845892--17846379	27	18.6	26	81	8	508	43	21	16	18	1.88
17845873--17846379	80	6.4	81	81	6	569	43	22	16	17	1.88
17847872--17847911	20	2.0	20	95	0	71	27	35	2	35	1.71
17851980--17852014	17	2.0	17	88	5	52	11	20	42	25	1.85
17852241--17852316	27	2.8	26	84	4	89	47	18	18	15	1.83
17852258--17852379	63	1.9	63	83	0	154	45	22	16	15	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17852320--17852653	27	12.4	26	82	7	339	40	20	18	20	1.92
17852320--17852654	81	4.1	81	83	4	397	40	20	18	20	1.92
17852320--17852654	54	6.2	54	83	5	374	40	20	18	20	1.92
17852876--17852956	26	3.1	26	90	0	126	20	16	22	40	1.91
17853064--17853145	28	2.9	28	94	0	146	26	25	20	26	1.99
17853594--17853642	22	2.3	21	82	10	55	40	6	12	40	1.67
17859627--17859926	165	1.8	166	83	3	408	42	11	13	33	1.80
17874033--17874071	20	2.0	20	90	10	62	20	10	7	61	1.52
17884449--17884566	27	4.4	27	87	5	150	35	22	16	25	1.94
17890687--17890768	27	3.0	27	83	5	94	37	20	15	25	1.93
17890867--17890939	27	2.8	27	82	12	82	16	21	23	38	1.93
17917006--17917084	40	2.0	40	94	0	140	32	20	3	43	1.70
17920517--17920554	15	2.6	15	87	4	51	34	39	7	18	1.80
17925984--17926042	19	3.3	18	80	13	68	79	11	0	8	0.93
17926049--17926082	7	4.7	7	85	7	50	82	0	17	0	0.67
17926074--17926135	18	3.4	18	76	12	72	56	6	22	14	1.61
17926090--17926146	19	3.1	19	75	14	73	49	8	22	19	1.76
17926074--17926146	37	2.0	37	97	0	137	52	8	21	17	1.71
17926954--17926994	15	2.6	16	84	3	57	26	7	2	63	1.33
17929699--17930042	54	6.4	54	87	3	469	42	19	16	20	1.89
17929699--17930044	27	12.8	27	86	4	425	42	19	16	21	1.89
17931767--17931837	24	2.9	25	79	6	83	33	38	11	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17934376--17934466	28	3.1	29	78	10	96	26	20	26	26	1.99
17934592--17934649	27	2.2	26	81	6	64	39	18	20	20	1.92
17934764--17934878	27	4.3	26	78	4	113	18	18	20	42	1.89
17935564--17935602	5	7.8	5	85	0	51	58	0	35	5	1.20
17937341--17937590	136	1.8	136	87	3	369	32	14	11	41	1.81
17937480--17937794	163	1.9	164	82	4	395	34	12	12	41	1.79
17938522--17938556	17	2.1	17	89	5	54	42	14	11	31	1.81
17943460--17943489	14	2.2	13	94	5	51	0	33	0	66	0.92
17943459--17943505	22	2.1	22	84	7	60	2	29	0	68	1.02
17946570--17946639	20	3.5	20	80	0	86	8	25	25	40	1.84
17948535--17948744	27	7.8	27	83	3	264	35	14	17	32	1.91
17948535--17948739	81	2.5	81	95	2	360	34	14	18	32	1.91
17958224--17958519	150	1.9	154	81	5	359	23	31	19	25	1.98
17958224--17958507	50	5.6	50	86	3	318	23	31	19	25	1.98
17965088--17965208	50	2.4	50	81	0	143	21	29	23	25	1.99
17968584--17968632	25	2.0	25	83	0	62	34	12	16	36	1.86
17976500--17976596	43	2.2	44	98	1	187	32	13	16	37	1.88
17982415--17982514	25	4.0	25	89	1	146	33	22	20	25	1.97
17982423--17982533	50	2.2	50	85	0	150	33	21	18	26	1.97
17988505--17988644	43	3.3	42	74	7	131	27	25	15	31	1.96
17993594--17993679	25	3.4	25	77	0	100	25	18	20	34	1.96
17999247--17999331	21	4.0	21	81	9	84	36	21	22	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17999247--17999354	23	5.0	22	82	6	96	37	18	22	21	1.94
17999562--17999644	36	2.3	37	83	6	98	31	21	2	44	1.65
18000479--18000538	27	2.1	27	84	9	75	43	0	1	55	1.10
18000504--18000540	16	2.3	17	81	13	51	48	0	0	51	1.00
18006631--18006738	23	5.0	22	83	5	123	35	25	22	17	1.95
18006940--18006990	25	2.0	26	81	14	61	45	1	0	52	1.12
18008260--18008297	18	2.1	19	85	14	53	0	21	0	78	0.74
18008259--18008299	13	3.2	13	90	10	66	0	24	0	75	0.80
18012942--18012966	12	2.1	12	100	0	50	20	16	16	48	1.82
18013452--18013621	83	2.0	83	93	0	286	36	12	10	41	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202