genome.fa.s10.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  144  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44845618--44845671	19	2.8	19	83	10	58	37	0	9	53	1.33
44847224--44847279	15	3.5	15	71	19	51	48	1	1	48	1.22
44852530--44852565	2	18.0	2	100	0	72	50	0	0	50	1.00
44854674--44854728	28	2.0	28	96	0	101	29	14	0	56	1.39
44860988--44861030	21	2.0	21	86	0	59	51	18	6	23	1.70
44867335--44867363	11	2.7	11	94	5	51	51	0	37	10	1.36
44870503--44870559	17	3.5	17	66	9	55	12	40	29	17	1.86
44875754--44875802	25	2.0	25	88	8	73	30	22	20	26	1.98
44875767--44875815	25	2.0	25	87	0	71	32	24	14	28	1.94
44878798--44878889	23	4.0	23	75	19	86	40	6	0	53	1.27
44878806--44878914	46	2.3	47	81	6	114	36	7	0	55	1.34
44878803--44878951	25	6.2	25	75	9	114	34	6	2	55	1.40
44879195--44879240	24	1.9	24	90	0	74	30	8	2	58	1.40
44891209--44891255	11	4.3	11	76	7	51	78	4	2	14	0.99
44895352--44895407	29	1.9	29	88	0	85	25	8	17	48	1.76
44895429--44895500	28	2.5	29	74	14	69	31	16	19	31	1.94
44908291--44908342	21	2.5	21	80	0	59	44	19	7	28	1.78
44913564--44913758	40	4.9	40	89	1	293	18	30	17	33	1.94
44913564--44913747	20	9.2	20	67	11	126	18	30	18	32	1.95
44920771--44920808	15	2.5	15	86	0	58	23	36	18	21	1.95
44922097--44922150	21	2.6	21	87	0	72	40	16	7	35	1.77
44925195--44925246	26	2.0	25	81	3	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44926791--44926844	27	2.0	27	92	0	90	29	3	9	57	1.47
44930772--44930840	22	3.1	21	77	8	66	43	15	21	18	1.88
44935305--44935360	27	2.1	27	96	0	103	19	21	12	46	1.83
44940127--44940192	29	2.2	30	86	2	89	30	13	1	54	1.48
44940225--44940294	27	2.6	27	88	0	86	30	24	30	15	1.96
44941215--44941271	27	2.1	27	100	0	114	17	28	24	29	1.97
44941215--44941280	27	2.4	27	92	5	98	18	30	24	27	1.98
44941337--44941392	27	2.1	27	93	6	96	46	0	8	44	1.34
44942104--44942190	40	2.1	41	83	6	106	54	1	5	39	1.32
44942171--44942225	18	3.1	18	75	12	60	50	0	1	47	1.11
44942295--44942326	6	5.3	6	100	0	64	50	0	0	50	1.00
44948353--44948390	15	2.4	16	86	4	51	26	2	0	71	1.00
44955827--44955857	2	15.5	2	100	0	62	51	0	0	48	1.00
44956480--44956546	31	2.2	30	86	5	91	34	8	10	46	1.70
44957804--44957858	20	2.8	20	83	10	60	52	9	1	36	1.44
44959189--44959251	30	2.1	30	82	5	74	19	49	1	30	1.58
44964572--44964618	11	4.3	11	78	10	60	42	10	6	40	1.65
44964713--44964928	45	4.8	45	86	1	247	18	21	16	43	1.88
44966081--44966124	17	2.5	17	88	3	61	13	4	2	79	0.98
44981470--44981502	13	2.7	12	90	9	57	66	0	0	33	0.92
44981875--44981903	2	15.0	2	92	7	51	48	0	0	51	1.00
44984454--44984511	28	2.1	28	83	3	73	10	18	29	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44987564--44987598	17	2.1	17	100	0	70	37	5	11	45	1.64
44988302--44988489	96	2.0	96	91	0	304	33	14	30	20	1.93
44990397--44990470	29	2.5	29	76	14	71	44	14	14	25	1.84
44990558--44990629	18	3.6	20	73	15	53	45	11	2	40	1.54
44990682--44990736	24	2.3	24	87	6	76	49	7	1	41	1.41
44992604--44992635	3	10.7	3	93	0	55	0	34	0	65	0.93
44995423--44995515	46	2.0	45	87	6	134	23	5	27	43	1.76
44997683--44997734	23	2.3	22	75	21	54	9	23	1	65	1.32
45009346--45009378	12	2.6	13	90	4	50	75	0	0	24	0.80
45012916--45012958	3	14.3	3	85	0	59	25	0	2	72	0.97
45013244--45013335	37	2.4	38	75	13	109	36	11	3	47	1.57
45013735--45014038	108	2.8	108	92	2	488	30	18	19	31	1.96
45014527--45014577	12	4.1	12	72	18	50	49	1	1	47	1.24
45014530--45014571	21	2.0	21	85	0	57	52	2	2	42	1.27
45015054--45015093	19	2.1	19	85	0	53	35	2	7	55	1.42
45016283--45016307	4	6.2	4	100	0	50	24	0	0	76	0.80
45023399--45024139	188	3.9	188	92	0	1187	28	24	15	31	1.95
45031809--45031877	26	2.7	26	83	0	84	21	24	21	31	1.98
45033397--45033435	19	2.0	20	90	5	62	48	23	5	23	1.70
45036805--45037032	122	1.9	122	92	3	388	32	18	14	34	1.91
45037390--45037516	61	2.0	61	87	9	182	62	14	10	12	1.53
45037994--45038088	3	31.7	3	82	4	111	61	2	4	32	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45041111--45041135	4	6.2	4	100	0	50	76	0	0	24	0.80
45046622--45046749	60	2.1	60	84	2	168	35	19	32	11	1.88
45046639--45046769	60	2.2	60	80	2	147	36	20	32	10	1.87
45046841--45046869	2	14.5	2	100	0	58	51	0	0	48	1.00
45053268--45053319	24	2.2	24	85	0	68	32	0	1	65	1.04
45056278--45056310	16	2.1	16	100	0	66	36	6	30	27	1.81
45056292--45056386	44	2.1	45	86	5	131	32	5	27	34	1.79
45056543--45056577	18	2.0	18	88	5	54	54	0	0	45	0.99
45056571--45056758	61	3.1	61	72	11	188	47	5	4	42	1.45
45056531--45056818	120	2.4	120	92	1	479	48	3	3	43	1.37
45056531--45056853	59	5.4	58	68	13	192	49	3	3	43	1.34
45056768--45056850	29	2.9	29	71	8	80	54	1	1	43	1.16
45056851--45057135	91	3.1	89	89	1	417	46	3	3	46	1.37
45057053--45057120	17	4.4	16	71	20	56	55	2	1	39	1.24
45066687--45066724	15	2.5	16	87	12	62	36	10	2	50	1.51
45070151--45070202	24	2.2	24	100	0	104	30	23	26	19	1.98
45077415--45077476	25	2.6	25	84	5	74	51	0	1	46	1.10
45086627--45086740	43	2.6	43	84	4	140	27	16	24	31	1.96
45094858--45094910	24	2.2	24	80	9	63	45	1	0	52	1.11
45094903--45094940	18	2.1	19	85	5	51	44	2	0	52	1.14
45096868--45096921	23	2.4	23	87	6	76	50	7	5	37	1.54
45101844--45101889	21	2.2	20	84	3	56	47	21	8	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45102230--45102305	31	2.6	28	78	10	71	59	5	0	35	1.20
45102281--45102315	17	2.1	17	89	5	54	62	2	0	34	1.10
45106137--45106183	20	2.3	20	85	7	60	51	4	4	40	1.41
45111143--45111188	18	2.6	18	75	24	53	56	0	6	36	1.25
45112524--45112591	31	2.2	31	84	5	84	38	11	16	33	1.85
45117317--45117350	2	17.0	2	100	0	68	50	0	0	50	1.00
45124091--45124190	21	4.8	21	76	4	94	19	23	15	43	1.88
45124080--45124159	42	1.9	42	89	0	124	17	22	15	45	1.85
45124097--45124217	42	2.9	42	81	2	127	18	22	14	44	1.86
45124061--45124218	63	2.5	63	73	2	156	18	22	13	44	1.86
45124827--45124856	14	2.1	14	100	0	60	60	6	0	33	1.23
45126414--45127070	50	13.2	50	72	6	487	31	21	21	25	1.98
45126400--45127070	100	6.8	98	89	2	902	31	21	21	26	1.98
45127966--45128011	6	7.7	6	100	0	92	15	0	0	84	0.62
45128700--45128764	3	21.7	3	96	0	121	33	1	0	64	1.03
45129183--45129222	16	2.5	16	91	0	62	47	2	7	42	1.45
45129155--45129207	22	2.4	22	87	0	70	52	1	1	43	1.23
45129211--45129372	68	2.6	57	81	17	189	40	4	8	46	1.56
45129238--45129411	68	2.6	68	98	0	330	40	5	9	44	1.60
45129354--45129381	9	3.1	9	100	0	56	32	0	10	57	1.33
45129478--45129521	24	1.9	22	90	9	70	61	4	0	34	1.16
45130066--45130109	21	2.1	21	100	0	88	38	9	13	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45130065--45130120	21	2.8	19	87	10	85	37	8	16	37	1.80
45130078--45130143	23	3.0	23	82	12	77	37	6	16	39	1.74
45130109--45130153	23	2.0	23	86	4	65	33	4	15	46	1.66
45130326--45130364	19	2.0	21	85	10	55	15	10	5	69	1.34
45130749--45130796	17	2.8	17	80	3	60	22	0	2	75	0.91
45132126--45132178	21	2.5	21	76	11	54	24	3	1	69	1.15
45133211--45133386	87	2.0	87	83	2	219	38	19	9	33	1.83
45133389--45133487	38	2.7	38	74	12	98	59	0	2	38	1.09
45133863--45133917	8	6.5	8	77	10	56	21	3	1	72	1.09
45133816--45133883	26	2.6	26	77	11	75	33	0	1	64	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202