genome.fa.s10.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10 ID=Chr10-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62175169

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   

This is table  51  of  202  ( 24201 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15171896--15171933	6	6.3	6	100	0	76	31	18	15	34	1.92
15180032--15180119	23	3.9	23	81	11	110	18	21	22	37	1.94
15180032--15180141	23	5.1	21	82	3	105	19	20	21	39	1.93
15180033--15180141	44	2.5	42	83	7	130	18	20	22	39	1.92
15181759--15181795	17	2.3	17	81	9	51	51	10	5	32	1.60
15198442--15198486	3	14.7	3	95	4	81	35	0	0	64	0.94
15198816--15198852	19	1.9	19	94	0	65	43	0	0	56	0.99
15211018--15211081	21	3.0	21	72	0	65	42	14	25	18	1.88
15210995--15211115	42	2.9	42	87	0	170	43	16	22	17	1.87
15216338--15216489	42	3.9	37	80	12	123	21	21	26	29	1.99
15216339--15216489	77	2.0	77	84	10	202	21	21	26	29	1.99
15216297--15216489	41	4.8	39	78	12	171	22	21	25	30	1.99
15217391--15217431	21	2.0	21	85	4	57	17	2	41	39	1.62
15217707--15219056	451	3.0	451	93	0	2256	31	15	19	34	1.92
15220741--15220901	66	2.4	66	85	6	202	40	18	26	13	1.88
15220892--15220968	21	3.7	21	89	0	118	33	16	44	5	1.70
15220877--15220968	42	2.2	42	88	0	130	35	17	41	5	1.72
15221339--15221570	43	5.4	43	85	1	295	26	15	32	25	1.96
15221364--15221672	43	7.2	42	80	4	226	24	20	29	25	1.99
15221339--15221672	86	3.9	86	79	6	259	25	19	29	24	1.99
15221406--15221672	128	2.1	128	77	8	267	23	21	29	25	1.99
15230889--15230958	25	2.8	25	84	0	86	24	22	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15232842--15232882	18	2.3	18	91	4	66	51	0	2	46	1.14
15236989--15237044	24	2.3	24	87	0	85	23	42	23	10	1.85
15249595--15249638	21	2.1	21	100	0	88	56	4	4	34	1.40
15251411--15251482	28	2.4	28	73	15	65	48	1	1	48	1.18
15251805--15251843	2	19.5	2	100	0	78	48	0	0	51	1.00
15252495--15252673	28	6.4	28	79	5	191	22	17	6	53	1.66
15252494--15252661	55	3.0	54	80	8	194	23	17	5	52	1.66
15256296--15256349	19	2.9	19	73	18	60	38	3	3	53	1.36
15256296--15256402	36	2.9	36	78	17	107	39	3	3	53	1.37
15257011--15257053	5	8.6	5	100	0	86	20	0	18	60	1.36
15265511--15265586	23	3.3	23	90	0	125	31	26	19	22	1.98
15265804--15265842	18	2.2	17	86	13	53	46	20	0	33	1.51
15272872--15272924	23	2.3	23	93	0	97	32	26	20	20	1.98
15273154--15273192	18	2.2	17	86	13	53	46	20	0	33	1.51
15274816--15274891	37	2.1	36	83	11	93	40	2	2	53	1.28
15274999--15275029	16	1.9	16	93	0	53	45	0	3	51	1.17
15275814--15276105	138	2.1	138	84	1	381	28	21	15	34	1.94
15276912--15276955	21	2.1	21	83	8	54	56	4	4	34	1.40
15278489--15278540	24	2.2	24	92	0	86	55	7	1	34	1.39
15280436--15280498	24	2.7	24	80	2	65	52	9	3	34	1.50
15293074--15293221	7	20.7	7	72	9	57	43	36	0	19	1.51
15293075--15293180	50	2.1	51	81	10	121	43	38	0	17	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15293187--15293215	15	1.9	15	100	0	58	44	34	0	20	1.52
15293144--15293221	21	3.7	21	76	10	70	46	33	0	20	1.51
15293268--15293319	25	2.1	25	100	0	104	42	13	0	44	1.44
15293950--15294041	41	2.2	42	83	12	120	31	28	21	18	1.97
15294060--15294181	41	3.0	41	81	9	142	31	28	19	20	1.97
15293931--15294153	114	2.0	112	84	9	292	34	26	19	19	1.96
15298928--15298992	22	3.0	21	78	13	69	43	0	6	50	1.27
15298946--15298988	20	2.1	21	91	4	70	44	0	2	53	1.13
15298978--15299069	19	5.0	19	69	23	63	41	1	2	55	1.19
15298960--15299052	32	2.8	32	84	12	118	41	1	2	54	1.19
15299017--15299067	22	2.4	22	87	6	70	41	0	1	56	1.10
15298951--15299075	20	5.9	20	69	19	69	44	0	1	53	1.15
15299157--15299212	24	2.3	25	84	9	71	35	0	1	62	1.06
15299247--15299272	13	2.0	13	100	0	52	46	0	0	53	1.00
15299245--15299320	30	2.5	31	81	14	88	43	0	1	55	1.08
15299431--15299460	7	4.1	7	95	4	51	43	0	0	56	0.99
15302560--15302666	30	3.6	30	85	0	133	26	16	27	29	1.97
15304863--15305012	71	2.1	71	92	1	246	41	4	3	51	1.37
15304922--15304962	20	2.0	20	85	0	55	53	0	0	46	1.00
15305075--15305159	40	2.1	41	88	2	127	51	2	7	38	1.42
15305095--15305157	20	3.2	20	70	17	58	53	1	6	38	1.36
15309021--15309060	18	2.2	18	86	0	53	42	2	35	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15317376--15317412	16	2.3	16	86	13	58	40	0	0	59	0.97
15317398--15317433	18	1.9	18	88	5	54	58	0	0	41	0.98
15317996--15318039	2	22.0	2	90	0	70	47	2	2	47	1.27
15320433--15320457	10	2.5	10	100	0	50	12	0	16	72	1.13
15321089--15321147	2	29.5	2	73	13	50	42	6	0	50	1.28
15321422--15321475	6	9.0	6	100	0	108	50	16	0	33	1.46
15330509--15330557	25	2.0	25	84	8	64	34	4	2	59	1.28
15331780--15331852	19	3.8	19	88	0	119	38	10	15	35	1.82
15333039--15333078	19	2.0	20	85	4	55	32	5	10	52	1.56
15333319--15333513	98	2.0	98	94	0	345	28	10	24	36	1.89
15351129--15351163	4	8.8	4	100	0	70	51	25	0	22	1.48
15353022--15353054	17	1.9	17	88	11	50	45	0	9	45	1.35
15363895--15363929	18	1.9	18	94	0	61	42	2	2	51	1.31
15367097--15367128	13	2.5	13	89	0	55	46	12	3	37	1.57
15367097--15367194	40	2.5	40	74	12	103	37	14	4	43	1.64
15373949--15374527	50	11.5	50	71	1	377	24	19	22	34	1.97
15373970--15374530	101	5.6	100	84	3	644	24	19	22	34	1.97
15375922--15375972	7	7.4	7	85	12	63	15	15	0	68	1.21
15375922--15375972	13	3.8	13	80	17	59	15	15	0	68	1.21
15375940--15375983	19	2.3	19	88	4	61	11	20	0	68	1.20
15376827--15376878	22	2.2	24	77	12	56	17	7	11	63	1.50
15376829--15376884	22	2.5	23	75	16	55	14	8	10	66	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15381535--15381592	3	19.3	3	100	0	116	65	0	0	34	0.93
15381591--15381625	3	11.7	3	100	0	70	34	0	31	34	1.58
15385512--15385557	20	2.2	21	88	3	67	8	26	13	52	1.69
15387605--15387686	35	2.3	35	100	0	164	20	12	12	54	1.69
15389127--15389165	15	2.7	15	84	4	53	0	15	0	84	0.62
15389130--15389162	5	6.6	5	93	6	50	0	15	0	84	0.61
15390370--15390439	19	3.7	19	82	3	97	37	10	0	52	1.35
15390375--15390445	37	1.9	37	100	0	142	39	11	0	49	1.39
15390649--15390779	33	3.7	33	79	15	163	22	22	2	52	1.58
15390639--15390788	74	2.0	74	100	0	300	24	20	2	52	1.59
15390840--15390901	33	2.0	31	87	9	90	50	4	22	22	1.68
15391107--15391177	37	1.9	37	100	0	142	49	0	11	39	1.39
15391113--15391181	19	3.7	19	82	5	97	52	0	10	37	1.36
15391246--15391326	27	3.0	27	92	3	128	14	30	24	29	1.95
15392881--15392925	16	2.8	17	76	13	58	40	13	11	35	1.80
15393789--15393821	15	2.2	15	100	0	66	48	6	0	45	1.27
15394396--15394420	2	12.5	2	100	0	50	52	48	0	0	1.00
15396176--15396229	22	2.4	22	93	3	90	29	5	0	64	1.16
15400292--15400412	33	3.7	33	92	0	206	16	20	21	41	1.90
15400292--15400422	66	2.0	66	95	0	235	16	21	20	41	1.89
15400524--15400712	54	3.6	53	71	7	168	23	26	12	38	1.90
15400586--15400772	51	3.6	51	71	12	164	22	27	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15400522--15400761	105	2.3	105	89	0	363	23	27	12	36	1.91
15403396--15403452	25	2.3	25	90	0	87	22	21	29	26	1.99
15406267--15406300	2	17.5	2	93	6	61	50	0	0	50	1.00
15411050--15411149	20	5.0	20	73	4	76	38	20	32	10	1.85
15412454--15412648	98	2.0	98	94	0	345	36	24	11	27	1.90
15412927--15412960	3	11.3	3	100	0	68	67	0	0	32	0.91
15415478--15415964	44	11.1	44	66	6	198	25	24	20	30	1.98
15415478--15416034	132	4.2	132	90	0	864	24	24	19	31	1.98
15417309--15417361	1	53.0	1	76	0	52	0	0	11	88	0.51
15417310--15417359	17	2.9	17	91	8	84	0	0	12	88	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202