genome.fa.s11.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  15  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4279760--4279832	38	1.9	38	83	5	94	16	36	21	24	1.94
4281314--4281340	6	4.5	6	100	0	54	0	14	0	85	0.61
4285594--4285647	25	2.2	25	86	0	72	24	24	16	35	1.95
4285858--4285928	25	2.8	25	77	12	65	25	26	18	29	1.98
4290249--4290333	37	2.3	37	87	0	125	28	11	20	40	1.87
4291215--4291266	24	2.2	24	85	0	68	38	15	1	44	1.58
4291225--4291271	24	2.0	24	95	0	85	34	19	2	44	1.62
4291675--4291746	22	3.3	22	73	7	67	41	18	23	16	1.89
4292203--4292316	56	2.0	57	98	1	221	41	17	5	35	1.72
4292208--4292298	28	3.2	28	65	17	80	38	19	4	37	1.72
4293608--4293646	20	2.0	20	94	0	69	25	35	25	12	1.92
4301340--4301372	13	2.6	13	90	4	50	60	9	15	15	1.58
4300494--4302220	617	2.8	605	86	6	2324	34	14	16	33	1.90
4302544--4302611	20	3.3	20	79	6	75	23	19	4	52	1.63
4303094--4303137	20	2.2	20	88	4	63	38	6	2	52	1.41
4304065--4304145	29	2.8	28	75	7	81	49	14	4	30	1.65
4305613--4305648	2	18.0	2	100	0	72	50	0	0	50	1.00
4307183--4307229	19	2.5	19	79	3	60	57	4	8	29	1.48
4308864--4308947	42	2.0	41	84	9	107	15	33	23	27	1.95
4310846--4310941	49	2.0	49	85	0	129	30	31	14	23	1.95
4313416--4313450	16	2.2	17	90	10	56	80	11	0	8	0.92
4316085--4316114	6	5.0	6	91	0	51	0	20	16	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4318384--4318408	13	1.9	13	100	0	50	36	0	16	48	1.46
4319774--4319820	23	2.0	23	95	0	85	53	10	4	31	1.55
4320298--4320327	2	15.5	2	93	6	53	50	0	0	50	1.00
4327432--4327461	11	2.7	11	89	0	51	10	16	20	53	1.71
4330028--4330096	33	2.1	33	91	5	113	43	37	5	13	1.67
4333201--4333244	19	2.4	19	84	3	63	52	4	4	38	1.42
4335478--4335714	89	2.6	90	77	6	239	35	16	19	29	1.93
4335429--4335740	90	3.5	88	76	7	286	33	16	20	29	1.94
4337518--4337589	33	2.2	33	87	7	101	61	4	0	34	1.16
4349573--4349651	10	8.2	10	71	18	51	59	0	0	40	0.97
4349551--4349647	28	3.4	27	80	14	99	58	1	1	39	1.12
4349571--4349649	20	4.0	20	80	4	81	58	0	0	41	0.98
4353429--4353856	215	2.0	215	94	0	757	33	14	25	25	1.94
4355831--4355989	43	3.7	42	79	7	169	23	18	27	30	1.97
4355872--4355980	42	2.6	42	85	4	130	24	18	25	31	1.98
4358906--4358963	22	2.6	22	81	7	64	41	17	5	36	1.72
4359638--4360416	388	2.0	388	100	0	1558	37	18	10	33	1.85
4367483--4367521	16	2.5	15	80	12	51	30	0	0	69	0.89
4369329--4369367	16	2.5	15	80	12	51	30	0	0	69	0.89
4370870--4370901	2	16.0	2	100	0	64	50	0	0	50	1.00
4373903--4374358	231	2.0	231	100	0	912	38	15	10	36	1.81
4374378--4374414	18	2.0	19	85	15	51	40	0	5	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4374517--4374564	2	23.5	2	87	4	69	45	4	0	50	1.21
4377121--4377383	131	2.0	132	98	0	510	47	4	7	40	1.52
4377258--4377294	18	2.0	19	85	15	51	40	0	5	54	1.24
4379031--4379067	18	2.1	18	100	0	74	21	21	16	40	1.91
4380532--4380727	100	2.0	100	97	0	374	65	6	5	22	1.36
4381483--4381528	18	2.5	19	89	6	69	15	4	23	56	1.57
4382596--4382634	19	2.1	19	85	0	51	51	10	2	35	1.50
4384362--4384711	44	7.8	44	69	11	219	27	22	16	33	1.95
4384295--4384700	89	4.6	89	86	5	522	26	23	16	33	1.96
4384742--4385060	44	7.2	45	67	4	146	25	27	21	25	1.99
4384723--4385135	88	4.7	88	94	0	646	25	27	22	24	2.00
4384908--4385135	44	5.2	45	67	4	176	24	28	22	25	2.00
4386946--4386987	19	2.2	20	87	12	61	64	4	16	14	1.45
4388847--4388892	19	2.4	19	85	7	58	47	8	19	23	1.77
4390935--4390973	19	2.1	19	85	0	51	51	10	2	35	1.50
4392011--4392049	19	2.1	19	85	0	51	51	10	2	35	1.50
4394672--4394749	39	2.0	38	82	7	95	26	16	21	34	1.95
4394387--4394888	115	4.4	115	72	11	343	31	19	21	27	1.98
4394948--4394986	21	1.9	20	89	5	60	20	0	35	43	1.52
4408545--4408615	21	3.4	21	86	0	97	35	21	40	2	1.68
4408598--4408639	12	3.5	12	81	12	50	45	14	38	2	1.58
4409058--4409390	42	7.9	42	90	3	485	26	20	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4409480--4409522	22	2.0	22	90	0	68	48	27	13	9	1.73
4411985--4412020	16	2.1	16	90	10	54	55	0	0	44	0.99
4412272--4412347	38	2.0	38	97	0	143	31	30	5	32	1.80
4415990--4416201	104	2.0	105	99	0	417	46	5	9	38	1.60
4417209--4417239	2	15.5	2	100	0	62	51	0	0	48	1.00
4419685--4419751	7	8.7	7	77	18	53	20	2	1	74	1.03
4424218--4424492	137	2.0	138	91	0	444	29	18	24	28	1.98
4431634--4431665	16	2.1	16	94	5	57	40	21	6	31	1.78
4431995--4432564	82	7.0	82	91	0	836	32	25	20	22	1.98
4434024--4434090	7	8.7	7	77	18	53	20	2	1	74	1.03
4434595--4434627	16	2.1	16	88	5	50	63	12	0	24	1.28
4439785--4439819	3	11.7	3	87	0	52	60	0	5	34	1.21
4441306--4441440	40	3.4	39	74	7	110	37	22	23	17	1.94
4441479--4441675	41	4.8	41	79	5	184	15	25	24	34	1.94
4441477--4441675	82	2.4	82	76	5	204	15	25	24	34	1.95
4454566--4454769	43	4.7	43	83	0	246	21	17	32	28	1.96
4454888--4454930	22	2.0	22	90	0	68	44	25	20	9	1.81
4460514--4460557	21	2.0	22	83	12	56	50	4	0	45	1.22
4463436--4463460	2	12.5	2	100	0	50	48	0	0	52	1.00
4464502--4464534	2	16.5	2	100	0	66	48	0	0	51	1.00
4474298--4474352	27	2.0	29	86	13	80	58	0	32	9	1.30
4476589--4476705	3	39.3	3	77	8	114	63	1	4	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4478278--4479124	90	9.9	90	71	15	371	28	22	19	29	1.98
4478417--4479130	46	16.8	41	70	17	292	28	22	19	29	1.98
4478328--4479131	170	4.7	170	98	0	1545	28	22	19	30	1.98
4490384--4490677	109	2.7	109	87	2	403	33	19	14	31	1.93
4490855--4490887	10	3.1	11	86	8	50	60	0	9	30	1.27
4491074--4491134	28	2.2	27	82	11	70	52	4	9	32	1.56
4491463--4491579	3	39.3	3	77	8	114	62	1	4	31	1.24
4502639--4502700	29	2.2	29	82	8	74	61	4	1	32	1.27
4504592--4504769	81	2.2	82	88	1	268	37	15	16	30	1.90
4504718--4504825	56	1.9	57	90	1	173	35	15	11	37	1.83
4504775--4504983	80	2.6	81	93	1	357	37	17	11	33	1.87
4512205--4512243	21	1.9	20	89	5	60	66	5	0	28	1.12
4518834--4518861	4	7.0	4	100	0	56	50	25	0	25	1.50
4526126--4526626	44	11.3	44	81	5	569	30	24	14	30	1.94
4526126--4526626	89	5.6	88	84	4	542	30	24	14	30	1.94
4526126--4526601	134	3.6	133	85	3	600	30	25	14	30	1.94
4528310--4528342	7	4.7	7	85	14	50	12	15	0	72	1.12
4532457--4532482	13	2.0	13	100	0	52	46	15	7	30	1.74
4534519--4534559	18	2.3	17	84	12	55	63	0	7	29	1.21
4534524--4534577	15	3.7	15	75	25	53	61	1	9	27	1.37
4535901--4536009	38	2.9	38	88	0	155	27	11	21	40	1.86
4545494--4545537	23	1.9	22	82	17	54	36	25	0	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4545681--4545867	51	3.7	51	79	5	200	31	25	16	26	1.96
4545680--4545863	101	1.8	102	88	3	282	32	25	16	26	1.96
4554439--4554518	41	2.0	39	83	13	101	51	3	5	40	1.42
4554700--4554982	43	6.6	43	83	6	308	30	26	19	23	1.98
4562303--4562479	41	4.3	41	96	0	327	30	23	21	24	1.99
4562512--4562648	40	3.4	39	78	10	134	18	19	21	39	1.93
4562538--4562643	40	2.7	41	85	5	146	18	22	24	33	1.97
4565244--4565400	42	3.8	42	81	6	140	41	18	24	15	1.89
4565301--4565456	42	3.7	43	79	10	160	41	16	23	18	1.90
4565263--4565460	85	2.3	84	80	2	218	42	17	23	16	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75