genome.fa.s11.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  6  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572274--1572409	40	3.4	39	77	8	123	37	20	20	21	1.94
1572449--1572801	41	8.7	41	88	3	498	18	21	27	32	1.96
1573295--1573335	21	2.0	20	85	4	55	19	0	41	39	1.52
1578075--1578104	14	2.1	14	100	0	60	33	6	13	46	1.69
1578286--1578489	86	2.4	85	87	4	293	26	19	28	25	1.99
1578269--1578489	43	5.2	43	87	1	266	26	19	28	26	1.99
1581628--1581686	24	2.5	24	83	10	77	20	6	23	49	1.73
1581802--1581856	26	2.1	27	86	3	76	23	21	20	34	1.97
1581859--1582105	32	7.7	32	78	8	234	21	21	21	36	1.95
1581873--1582125	96	2.6	95	83	4	303	20	20	20	37	1.95
1581980--1582132	64	2.4	65	81	5	179	20	20	21	37	1.94
1591732--1591765	5	7.0	5	93	6	61	61	0	38	0	0.96
1594228--1594252	9	2.8	9	100	0	50	68	8	0	24	1.16
1595279--1595351	19	3.8	19	92	0	119	34	16	12	36	1.86
1600707--1600745	14	2.8	14	88	0	51	58	5	2	33	1.33
1600723--1600774	22	2.4	21	84	9	68	61	5	3	28	1.37
1602162--1602186	2	12.5	2	100	0	50	52	0	0	48	1.00
1604568--1604604	17	2.2	17	100	0	74	29	21	10	37	1.88
1607967--1608026	30	2.0	30	86	0	84	45	5	21	28	1.73
1610104--1610137	17	2.0	17	94	0	59	35	2	11	50	1.54
1611599--1611651	29	2.0	26	82	14	63	32	20	5	41	1.76
1617451--1617489	5	7.4	5	83	11	51	23	0	15	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1617451--1617489	11	3.7	10	83	12	51	23	0	15	61	1.33
1617451--1617489	17	2.5	15	88	12	60	23	0	15	61	1.33
1617451--1617491	16	2.5	17	92	7	68	24	0	14	60	1.34
1634805--1634834	14	2.1	14	100	0	60	36	6	26	30	1.82
1662132--1662193	31	2.0	31	87	0	88	33	16	19	30	1.94
1662133--1662201	31	2.2	31	84	0	84	34	17	17	30	1.93
1667289--1667319	16	1.9	16	93	0	53	48	9	6	35	1.62
1667469--1667512	18	2.4	18	82	10	54	45	0	2	52	1.13
1667480--1667530	19	2.6	19	75	12	50	43	1	0	54	1.11
1669230--1669364	25	5.3	25	80	8	139	20	25	20	34	1.96
1669208--1669452	50	4.9	50	74	11	182	18	24	20	36	1.95
1669208--1669365	25	6.3	25	77	10	135	18	25	19	35	1.95
1676904--1676928	8	3.1	8	100	0	50	52	24	0	24	1.48
1677855--1677902	21	2.2	23	78	14	57	39	4	0	56	1.19
1686909--1686933	8	3.1	8	100	0	50	52	24	0	24	1.48
1687806--1687830	10	2.5	10	100	0	50	40	0	0	60	0.97
1688128--1688175	21	2.2	23	78	14	57	39	4	0	56	1.19
1691158--1691199	13	3.2	13	89	0	66	35	26	9	28	1.88
1691450--1691487	15	2.5	15	87	8	51	65	2	0	31	1.06
1694409--1694433	4	6.2	4	100	0	50	76	0	0	24	0.80
1695654--1695691	17	2.3	17	86	13	53	63	0	0	36	0.95
1696755--1696812	29	2.0	29	86	6	82	34	6	13	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1701633--1701791	77	2.0	78	92	2	266	37	25	6	31	1.81
1704134--1704235	46	2.2	46	86	5	136	25	33	20	20	1.97
1704939--1704965	12	2.2	12	100	0	54	7	48	14	29	1.71
1705248--1705436	98	1.9	96	80	6	211	20	27	12	39	1.88
1714088--1714170	41	2.0	42	90	2	132	44	2	12	40	1.54
1715822--1715884	31	2.0	31	84	0	81	49	9	7	33	1.64
1717376--1717400	12	2.1	12	100	0	50	92	0	8	0	0.40
1718099--1718171	30	2.4	30	83	0	92	27	16	35	20	1.94
1718125--1718168	15	2.9	15	100	0	88	31	13	34	20	1.92
1718125--1718183	30	2.0	30	86	0	82	27	15	35	22	1.94
1724556--1724633	23	3.5	22	70	19	63	64	2	7	25	1.33
1734239--1734287	25	1.9	26	84	12	66	59	2	4	34	1.28
1738145--1738300	33	4.6	33	69	23	108	32	25	20	21	1.97
1738100--1738304	103	2.0	103	95	0	365	31	25	20	22	1.98
1739309--1739379	35	2.0	36	97	2	135	32	19	8	39	1.82
1739415--1739448	11	2.8	12	91	8	52	35	8	11	44	1.72
1743274--1743308	10	3.6	10	88	3	54	48	0	8	42	1.33
1743299--1743341	21	2.2	20	83	8	52	55	2	4	37	1.33
1743310--1743361	23	2.3	21	83	9	59	48	3	9	38	1.54
1747014--1747074	27	2.3	27	94	2	106	19	13	32	34	1.90
1747163--1747201	19	2.1	19	100	0	78	30	10	23	35	1.88
1747652--1747686	8	4.2	8	89	7	52	65	2	2	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1747652--1747686	17	2.1	16	89	5	52	65	2	2	28	1.21
1754074--1754865	395	2.0	396	99	0	1577	27	17	15	38	1.91
1764211--1764346	67	2.0	67	98	0	263	36	16	19	28	1.93
1772424--1772466	18	2.6	16	80	16	52	62	6	0	30	1.21
1791097--1791121	12	2.1	12	100	0	50	16	24	36	24	1.94
1811394--1811435	2	21.0	2	100	0	84	50	0	50	0	1.00
1817315--1817580	128	2.1	127	83	7	324	41	11	10	36	1.76
1821086--1821132	22	2.1	22	92	0	76	17	23	17	42	1.88
1827808--1827832	13	1.9	13	100	0	50	28	0	0	72	0.86
1827762--1827941	89	2.0	90	98	1	353	37	11	3	47	1.56
1827897--1827921	13	1.9	13	100	0	50	28	0	0	72	0.86
1835537--1835622	27	3.2	27	80	12	88	55	0	8	36	1.29
1842427--1842554	43	3.0	43	87	1	168	35	21	20	21	1.96
1842472--1842575	43	2.4	43	85	0	118	35	25	17	21	1.95
1855811--1855846	16	2.2	16	90	0	54	72	0	0	27	0.85
1855879--1855921	17	2.5	17	76	3	50	72	2	0	25	0.97
1856016--1856077	9	6.8	9	76	10	54	69	1	1	27	1.07
1856025--1856076	27	1.9	26	84	7	68	69	1	1	26	1.10
1856007--1856068	19	3.4	18	79	14	65	69	1	3	25	1.13
1856018--1856078	19	3.3	19	76	2	52	70	1	1	26	1.06
1856573--1856598	9	2.9	9	100	0	52	11	7	0	80	0.89
1856526--1857312	392	2.0	393	99	0	1567	33	6	10	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1856965--1856990	9	2.9	9	100	0	52	11	7	0	80	0.89
1857274--1857314	18	2.3	18	88	12	59	60	2	0	36	1.10
1858191--1858239	18	2.7	20	81	15	61	67	0	6	26	1.14
1858674--1858813	65	2.1	66	96	2	255	38	9	7	45	1.64
1863373--1863442	27	2.6	27	79	0	86	25	34	32	7	1.83
1863472--1863528	13	4.1	13	76	14	60	64	0	35	0	0.93
1863494--1863576	20	4.0	21	72	16	82	66	0	32	1	1.00
1863492--1863586	10	9.0	11	70	18	53	67	0	30	2	1.02
1863839--1864360	161	3.3	158	89	5	727	50	9	10	29	1.69
1864093--1864121	8	3.6	8	100	0	58	65	10	10	13	1.47
1864254--1864282	8	3.6	8	100	0	58	65	10	10	13	1.47
1867531--1867631	40	2.6	40	80	13	113	50	9	4	34	1.57
1867613--1867659	23	2.0	23	84	8	60	59	14	0	25	1.36
1867993--1868022	9	3.3	9	95	0	51	0	40	0	60	0.97
1869727--1869808	42	2.0	42	100	0	164	39	18	21	20	1.93
1872145--1872175	15	2.1	15	93	0	53	64	0	0	35	0.94
1874647--1874687	21	2.0	21	90	9	66	12	9	14	63	1.52
1881466--1881619	48	3.2	48	94	0	254	9	30	26	33	1.89
1881506--1881646	48	2.9	48	86	4	115	9	34	24	31	1.87
1881466--1881646	96	1.9	96	80	2	211	9	33	24	32	1.87
1883436--1883556	38	3.1	39	78	15	110	48	9	5	35	1.60
1884301--1884402	52	2.0	52	100	0	204	37	9	22	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885476--1885538	29	2.2	28	76	17	67	52	3	0	44	1.17
1885483--1885545	30	2.1	31	82	8	76	50	6	0	42	1.27
1890060--1890098	8	4.9	8	90	9	62	66	0	0	33	0.92
1890063--1890096	17	2.1	16	94	5	59	67	0	0	32	0.91
1890033--1890099	22	3.0	21	73	26	59	65	2	2	28	1.22
1890060--1890138	3	25.3	3	73	19	56	60	3	1	34	1.23
1890523--1890582	30	2.0	30	84	9	79	33	8	10	48	1.67
1892957--1893041	26	3.2	25	75	11	71	37	10	1	50	1.45
1892966--1893049	29	3.0	28	87	6	127	35	10	0	53	1.36
1895564--1895590	14	1.9	14	100	0	54	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75