genome.fa.s11.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  37  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11707290--11707335	22	2.1	22	100	0	92	43	8	13	34	1.74
11708468--11708584	5	24.0	5	69	11	57	65	0	34	0	0.93
11708468--11708575	37	3.2	33	75	14	112	64	0	35	0	0.94
11708475--11708637	41	3.9	41	85	9	181	68	0	31	0	0.90
11708468--11708636	71	2.4	71	81	10	179	67	0	32	0	0.91
11708468--11708640	77	2.4	71	78	13	179	67	0	32	0	0.91
11708469--11708613	10	14.3	10	70	20	63	68	0	31	0	0.90
11708514--11708636	10	12.2	10	68	17	67	71	0	28	0	0.86
11712471--11712535	27	2.4	27	100	0	130	18	27	30	23	1.97
11712998--11713045	22	2.2	22	89	10	73	35	4	6	54	1.45
11720185--11720249	29	2.3	28	76	7	69	44	16	15	23	1.86
11722374--11722419	24	1.9	24	86	8	67	32	10	4	52	1.56
11722670--11722745	29	2.7	28	74	10	82	30	11	2	55	1.50
11735272--11735686	44	9.0	44	72	14	298	32	18	21	28	1.96
11735197--11735635	142	3.1	142	93	0	763	32	17	21	28	1.96
11737581--11737626	24	1.9	24	86	8	67	34	8	4	52	1.52
11737865--11737943	29	2.8	29	81	9	99	34	10	1	54	1.42
11738874--11738915	22	2.0	22	90	4	68	50	0	0	50	1.00
11749525--11749563	20	2.0	20	85	14	55	41	0	2	56	1.13
11758637--11758980	171	2.0	172	99	0	681	40	9	8	40	1.69
11760741--11760836	48	2.0	48	97	0	183	44	17	8	29	1.78
11771291--11771341	25	2.0	26	88	3	77	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11771426--11771489	30	2.1	30	82	2	74	31	14	4	50	1.63
11791331--11791370	20	2.0	20	90	4	64	40	7	0	52	1.30
11793031--11793077	24	1.9	25	82	4	60	38	12	8	40	1.74
11793281--11793341	20	3.3	19	74	17	56	55	3	1	39	1.26
11793798--11793845	25	1.9	25	82	0	60	31	6	6	56	1.49
11795560--11795619	14	4.3	14	74	16	52	70	0	5	25	1.08
11797495--11797921	132	3.2	132	91	2	698	27	22	19	30	1.98
11802370--11802415	24	1.9	24	86	0	65	13	26	15	45	1.82
11809124--11809161	15	2.5	15	95	0	67	21	0	5	73	1.02
11809163--11809188	13	2.0	13	100	0	52	53	0	0	46	1.00
11809202--11809243	20	2.2	19	95	4	75	61	0	4	33	1.17
11812849--11813051	89	2.3	86	77	10	216	38	18	7	35	1.79
11813322--11813419	46	2.2	46	94	1	171	43	19	3	33	1.66
11818139--11818182	9	5.0	8	80	20	52	70	0	2	27	0.99
11818142--11818191	10	5.3	9	81	13	57	72	0	2	26	0.96
11818131--11818217	28	3.1	28	80	9	106	60	1	4	33	1.24
11818962--11819011	21	2.4	21	86	0	64	46	4	20	30	1.69
11818975--11819016	21	2.0	21	90	0	66	47	4	16	30	1.67
11821088--11821551	231	2.0	231	98	0	892	22	17	19	40	1.91
11822891--11822929	18	2.2	18	86	9	53	41	23	10	25	1.86
11826821--11827340	263	2.0	261	93	0	896	30	23	17	29	1.97
11830663--11830696	13	2.7	13	86	4	52	58	2	0	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11832874--11832900	12	2.2	12	100	0	54	44	7	7	40	1.60
11833286--11833472	97	1.9	97	93	0	320	32	15	20	32	1.94
11833445--11833627	41	4.5	41	92	0	276	29	22	22	25	1.99
11833445--11833672	82	2.8	82	83	2	208	29	22	22	25	1.99
11834340--11834364	13	1.9	13	100	0	50	16	0	16	68	1.22
11841575--11841761	41	4.6	41	86	2	241	28	20	22	27	1.99
11841699--11841814	41	2.8	41	76	2	99	28	18	25	27	1.98
11841575--11841800	123	1.8	123	79	3	258	29	20	23	26	1.99
11846596--11846730	37	3.6	37	75	11	150	32	14	17	35	1.90
11846597--11846748	74	2.1	74	93	0	259	32	12	17	37	1.87
11852431--11852503	19	3.8	19	88	0	119	36	9	16	36	1.81
11856825--11856870	24	1.9	24	86	0	65	45	17	26	10	1.81
11859141--11859165	13	1.9	13	100	0	50	88	12	0	0	0.53
11870410--11872715	132	17.5	132	91	0	3533	29	18	23	29	1.97
11871942--11872137	44	4.5	44	67	12	123	29	17	24	28	1.98
11872800--11873117	132	2.4	132	92	1	521	29	17	22	30	1.97
11873931--11874036	43	2.4	43	78	6	106	28	15	26	30	1.96
11874320--11874390	19	3.7	19	88	0	115	36	9	15	38	1.81
11874320--11874418	19	4.9	20	81	8	87	37	8	16	38	1.78
11878218--11878271	27	2.0	28	85	3	74	38	14	29	16	1.89
11878919--11878957	18	2.1	18	85	9	51	33	5	5	56	1.43
11886182--11886323	70	2.0	70	95	0	257	34	16	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11887949--11888016	6	11.0	6	85	3	55	22	5	1	70	1.17
11887951--11888000	26	1.9	26	84	8	66	18	8	2	72	1.19
11887992--11888016	11	2.3	11	100	0	50	32	0	0	68	0.90
11901854--11901985	50	2.6	50	82	0	147	25	23	28	22	1.99
11902239--11902277	12	3.2	12	85	0	51	51	5	23	20	1.67
11907703--11907918	107	2.0	108	99	0	425	29	11	15	43	1.82
11909500--11909614	25	4.6	25	82	0	113	36	20	15	26	1.93
11909556--11909624	25	2.8	25	84	0	66	40	17	13	28	1.87
11911456--11911486	3	10.7	3	93	6	55	70	0	0	29	0.87
11911624--11911663	18	2.2	18	86	8	55	37	0	2	60	1.11
11913029--11913097	22	3.1	22	80	0	84	28	14	13	43	1.83
11913101--11913200	34	2.9	34	86	0	128	31	20	24	25	1.98
11914848--11914883	15	2.4	15	90	0	54	47	16	13	22	1.82
11924121--11924203	31	2.8	29	80	7	78	34	10	12	42	1.77
11924427--11924451	13	1.9	13	100	0	50	40	20	8	32	1.81
11931042--11931152	44	2.5	44	88	5	154	27	23	20	27	1.99
11931076--11931409	44	7.7	43	69	11	160	28	26	18	26	1.98
11931075--11931468	218	1.8	218	90	1	637	27	26	19	26	1.99
11945370--11945399	14	2.1	14	100	0	60	60	13	13	13	1.60
11947527--11947561	18	1.9	18	94	0	61	40	14	42	2	1.60
11950267--11950326	24	2.5	25	78	8	70	15	41	8	35	1.77
11950315--11950363	6	8.2	6	77	8	55	16	28	4	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11950294--11950366	30	2.4	30	83	0	92	16	32	5	45	1.70
11952713--11953143	230	1.9	231	84	5	591	32	16	9	41	1.80
11953536--11953587	24	2.2	24	82	0	59	53	11	3	30	1.54
11959610--11959670	26	2.3	26	85	0	77	26	1	6	65	1.26
11963883--11963918	17	2.1	17	100	0	72	36	16	11	36	1.84
11970222--11970250	8	3.6	8	100	0	58	20	0	0	79	0.74
11970667--11970896	87	2.6	91	82	6	253	37	18	11	32	1.86
11970995--11971092	27	3.6	27	70	9	74	65	2	4	28	1.22
11971105--11971150	19	2.4	19	92	0	74	69	4	2	23	1.17
11975891--11975965	39	1.9	39	86	5	107	40	20	21	18	1.92
11975838--11976344	114	4.4	114	92	2	838	36	19	20	23	1.95
11975838--11976492	342	1.9	341	82	5	833	36	19	20	23	1.95
11977052--11977138	21	4.1	21	75	16	81	14	0	32	52	1.42
11977209--11977260	7	7.4	7	77	0	50	15	1	36	46	1.57
11977228--11977267	21	1.9	21	84	0	53	20	0	32	47	1.50
11977209--11977272	28	2.3	28	83	0	74	17	3	34	45	1.64
11977209--11977260	14	3.7	14	78	0	59	15	1	36	46	1.57
11977395--11977430	15	2.3	16	90	4	56	61	2	0	36	1.11
11977633--11977670	20	1.9	20	88	0	58	34	0	10	55	1.34
11978293--11978321	15	1.9	15	100	0	58	37	0	13	48	1.43
11978275--11978344	16	3.9	16	69	25	50	41	0	10	48	1.36
11978317--11978367	25	2.1	24	85	3	66	47	0	5	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11978816--11978912	49	2.0	49	100	0	194	40	14	8	37	1.76
11980227--11980948	9	82.4	9	65	17	197	45	19	3	31	1.66
11980225--11980296	19	3.7	19	87	5	99	44	16	1	37	1.57
11980358--11980400	20	2.2	19	87	4	59	55	11	2	30	1.48
11980364--11980412	15	3.5	15	75	16	59	57	12	2	28	1.46
11980358--11980504	21	7.0	21	74	19	119	46	18	2	31	1.63
11980378--11980946	16	33.8	16	65	19	130	45	20	2	31	1.66
11980510--11980588	41	1.9	41	92	0	131	49	20	2	27	1.62
11980448--11980642	25	7.8	26	72	14	117	44	23	3	29	1.70
11980564--11980887	120	2.7	120	92	0	549	44	20	3	30	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75