genome.fa.s11.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  35  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11057777--11057942	83	2.0	83	91	0	269	43	7	15	33	1.74
11062249--11062322	38	1.9	39	94	2	132	55	10	0	33	1.35
11080015--11080265	133	1.9	132	89	2	387	36	9	21	32	1.86
11081836--11081907	27	2.5	29	80	11	76	23	18	19	38	1.93
11082029--11082118	28	3.2	27	84	7	117	31	15	21	32	1.94
11098491--11098523	17	1.9	17	100	0	66	24	27	6	42	1.78
11119839--11119899	29	2.1	29	90	0	95	50	3	3	42	1.34
11120178--11120232	22	2.5	21	80	8	56	69	1	5	23	1.19
11123017--11123065	25	2.0	25	88	8	73	32	16	28	22	1.95
11123125--11123202	25	3.1	25	84	0	102	38	21	24	15	1.92
11123309--11123357	25	2.0	25	83	0	62	40	14	22	22	1.90
11123417--11123555	25	5.6	25	76	1	127	38	19	25	16	1.92
11123421--11123556	50	2.7	50	83	2	166	37	19	25	17	1.93
11125937--11126010	25	3.0	25	85	0	103	33	18	20	27	1.96
11125906--11126008	50	2.1	50	81	5	120	32	22	19	26	1.97
11129775--11129844	25	2.8	25	80	4	79	30	20	22	27	1.98
11136605--11136733	57	2.3	58	80	14	160	48	4	18	27	1.68
11136632--11136746	57	2.1	55	85	9	153	46	6	16	31	1.71
11136639--11136765	57	2.3	57	82	8	145	48	7	15	29	1.72
11137925--11137975	6	8.3	6	88	2	75	1	17	0	80	0.81
11141552--11142498	473	2.0	474	99	0	1871	39	14	11	34	1.82
11143120--11143198	39	2.0	39	97	0	149	24	24	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11144742--11144923	87	2.1	87	96	0	337	45	13	10	30	1.77
11146935--11147186	125	2.0	126	99	0	497	43	9	11	36	1.73
11151583--11151633	18	2.8	18	75	0	66	13	43	3	39	1.63
11152338--11152365	12	2.3	12	100	0	56	28	7	17	46	1.75
11153772--11153799	13	2.2	13	100	0	56	53	14	0	32	1.41
11154021--11154058	20	1.9	20	88	0	58	44	15	10	28	1.80
11154041--11154083	14	3.0	15	80	10	54	41	16	6	34	1.75
11155537--11155665	44	3.0	44	76	12	140	21	17	28	31	1.96
11158083--11158128	3	15.3	3	100	0	92	67	0	0	32	0.91
11158963--11158992	16	1.9	15	93	6	51	46	0	6	46	1.29
11164189--11164229	21	2.0	21	85	9	57	51	17	0	31	1.46
11164863--11164988	57	2.2	58	85	4	175	40	32	13	13	1.84
11165801--11165845	20	2.2	20	88	0	63	48	8	4	37	1.55
11165769--11165845	40	1.9	40	81	0	91	45	7	10	36	1.67
11165809--11165848	20	2.0	20	100	0	80	45	5	5	45	1.47
11165821--11165877	30	1.9	30	85	7	80	43	3	7	45	1.48
11167319--11167350	10	3.0	11	90	9	57	53	0	0	46	1.00
11167495--11167558	19	3.5	19	72	8	53	31	1	6	60	1.30
11167505--11167555	18	2.8	20	77	17	56	23	1	7	66	1.28
11175464--11175504	21	2.0	21	85	9	57	21	36	17	24	1.94
11175258--11175560	147	2.1	147	88	1	455	22	31	21	25	1.98
11180190--11180441	90	2.8	90	80	4	258	28	16	21	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11181211--11181454	66	3.8	64	80	5	224	28	0	19	51	1.50
11181208--11181372	21	7.7	22	67	20	71	25	0	21	52	1.52
11181956--11182027	36	2.0	36	97	0	135	40	8	29	22	1.83
11187108--11187421	155	2.0	156	98	1	612	29	15	17	36	1.91
11188457--11188698	50	4.7	50	78	5	200	28	19	27	24	1.98
11194622--11194654	16	2.0	17	88	5	50	39	24	3	33	1.71
11204065--11204092	12	2.3	12	100	0	56	42	7	0	50	1.30
11207754--11207800	18	2.6	18	90	6	69	57	4	2	36	1.30
11207754--11207802	12	4.1	12	83	0	53	55	6	2	36	1.37
11209835--11209931	43	2.3	43	80	7	108	42	22	13	21	1.88
11209872--11210066	42	4.6	42	80	3	110	44	20	14	20	1.87
11209921--11210060	42	3.3	41	81	2	154	43	18	16	21	1.88
11209899--11210061	84	1.9	84	83	3	211	43	19	15	21	1.87
11214467--11214508	22	1.9	22	90	0	66	28	2	47	21	1.63
11214502--11214541	20	2.0	20	95	0	71	37	5	7	50	1.53
11220759--11220791	16	2.1	16	94	0	57	42	0	15	42	1.46
11223193--11223228	18	2.1	17	89	5	54	30	0	0	69	0.89
11232795--11232819	13	1.9	13	100	0	50	20	40	8	32	1.81
11232949--11232978	6	5.0	6	95	0	51	0	46	0	53	1.00
11238138--11238243	44	2.5	41	77	18	126	36	30	3	29	1.75
11238155--11238245	46	2.0	46	91	4	150	39	29	4	26	1.75
11238225--11238261	16	2.3	16	95	0	65	24	32	5	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11240351--11240375	7	3.6	7	100	0	50	28	0	12	60	1.32
11241025--11241059	18	1.9	18	94	0	61	25	31	8	34	1.86
11246198--11246549	125	2.8	123	88	3	535	32	22	15	29	1.94
11248103--11248758	347	1.9	348	98	0	1278	23	19	23	33	1.97
11248600--11248978	126	3.0	125	87	2	546	29	16	22	32	1.96
11252196--11252307	23	4.6	23	78	14	80	29	0	24	45	1.59
11252222--11252408	29	6.6	29	76	15	194	29	0	25	43	1.59
11252201--11252367	24	6.5	25	73	17	130	30	0	24	44	1.58
11252201--11252394	53	3.6	52	85	6	244	29	0	24	44	1.58
11252387--11252429	19	2.3	19	91	0	68	25	0	30	44	1.55
11252411--11252453	13	3.3	13	96	0	77	25	0	23	51	1.49
11252411--11252515	12	8.1	12	76	13	66	22	0	28	48	1.51
11252479--11252519	13	3.2	13	89	6	66	26	0	21	51	1.48
11252504--11252568	28	2.3	28	91	2	103	24	0	29	46	1.53
11252628--11252662	13	2.7	13	86	0	52	22	0	25	51	1.48
11252654--11252691	18	2.1	18	85	9	51	15	0	39	44	1.47
11252924--11252958	13	2.7	13	86	0	52	22	0	28	48	1.51
11252980--11253084	13	7.4	13	74	17	77	24	0	25	48	1.57
11252922--11253082	61	2.8	56	83	10	189	23	1	28	45	1.63
11253131--11253182	25	2.1	25	100	0	104	42	15	0	42	1.47
11253135--11253227	25	4.0	23	72	17	86	40	12	3	43	1.59
11253641--11253665	7	3.6	7	100	0	50	60	12	0	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11254564--11254664	11	8.6	11	70	20	71	45	0	29	24	1.54
11254514--11254632	51	2.4	51	85	4	152	45	0	22	31	1.58
11254599--11254654	22	2.5	22	91	2	94	44	0	28	26	1.54
11254615--11254664	10	4.6	11	80	14	68	48	0	32	20	1.50
11254599--11254664	22	3.0	22	91	2	89	45	0	30	24	1.53
11254945--11255002	29	2.0	29	83	6	73	37	15	20	25	1.92
11258589--11258646	18	3.2	18	72	18	66	39	3	12	44	1.58
11258575--11258646	36	2.0	36	100	0	144	38	2	13	44	1.59
11261249--11261295	19	2.5	19	85	0	67	36	23	23	17	1.95
11268455--11268507	22	2.4	22	84	12	65	26	22	20	30	1.98
11271783--11271821	6	6.5	6	87	0	60	66	0	0	33	0.92
11273676--11273715	21	1.9	21	85	10	55	22	42	0	35	1.54
11276801--11276835	17	2.1	17	100	0	70	77	0	22	0	0.78
11279296--11279330	17	2.1	17	100	0	70	77	0	22	0	0.78
11289829--11289896	6	11.7	6	84	10	70	70	8	5	14	1.31
11290778--11290824	7	7.0	7	85	9	71	70	0	17	12	1.17
11290778--11290824	13	3.5	14	85	8	71	70	0	17	12	1.17
11290774--11290824	20	2.6	20	84	3	77	72	0	15	11	1.12
11292224--11292420	46	4.3	46	96	0	349	27	18	24	29	1.98
11292928--11293723	44	17.7	44	69	14	301	30	18	22	28	1.97
11292753--11293320	219	2.6	219	92	1	897	30	18	22	27	1.97
11293177--11293605	142	3.0	142	98	0	831	30	17	22	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292363--11293780	175	8.0	175	79	9	1111	30	18	22	28	1.97
11293462--11293772	44	7.1	44	72	10	174	30	16	22	30	1.96
11293333--11293922	317	1.9	317	88	3	911	30	17	22	29	1.97
11293780--11293910	44	3.0	44	85	2	156	28	19	23	29	1.98
11295532--11295577	14	3.5	13	80	14	58	43	10	10	34	1.75
11295645--11296500	112	7.7	112	96	0	1488	30	17	18	33	1.94
11296881--11297051	41	4.2	41	86	3	222	22	26	15	35	1.94
11304405--11304597	33	5.7	33	70	17	146	20	21	26	31	1.98
11304303--11304588	135	2.1	135	93	0	482	20	19	27	33	1.96
11309558--11309607	22	2.3	22	82	6	57	30	24	12	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75