genome.fa.s11.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  18  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5113415--5113943	44	11.3	44	69	16	289	32	19	21	26	1.97
5113395--5113937	98	5.8	94	68	18	242	32	20	20	26	1.97
5113424--5113994	142	4.0	142	94	0	966	33	19	21	26	1.97
5120891--5120998	31	3.5	30	79	12	103	42	12	9	36	1.74
5122620--5122665	18	2.6	18	89	0	65	43	8	8	39	1.66
5123548--5123620	30	2.4	29	79	16	78	41	8	5	45	1.57
5128692--5128728	5	7.4	5	100	0	74	18	0	0	81	0.70
5128681--5128719	15	2.5	15	87	4	51	28	0	0	71	0.86
5133385--5133418	7	4.7	7	89	7	50	14	38	0	47	1.45
5133385--5133418	15	2.4	14	90	5	50	14	38	0	47	1.45
5138177--5138209	2	16.5	2	93	0	57	45	3	0	51	1.16
5138362--5138403	14	3.1	14	83	10	52	76	11	0	11	1.03
5138362--5138404	13	3.1	14	78	21	54	76	11	0	11	1.02
5138362--5138410	15	3.3	15	77	13	57	73	14	0	12	1.10
5139658--5139705	20	2.4	21	80	16	57	22	8	2	66	1.29
5139707--5139747	15	2.7	16	81	11	50	21	9	2	65	1.34
5139883--5139907	12	2.1	12	100	0	50	24	8	0	68	1.16
5150773--5150843	35	2.0	35	97	0	133	18	25	28	28	1.98
5151154--5151214	25	2.3	26	81	10	63	34	4	3	57	1.36
5151194--5151229	12	2.9	12	88	8	54	33	8	0	58	1.28
5154567--5154612	11	4.3	10	79	15	56	76	0	10	13	1.03
5154581--5154621	12	3.6	11	87	12	57	73	0	12	14	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5154570--5154621	22	2.3	23	90	3	79	71	0	13	15	1.15
5155946--5156121	50	3.5	50	72	4	167	34	22	18	25	1.96
5155931--5156122	100	1.9	100	93	2	332	34	21	19	23	1.97
5155940--5156171	100	2.3	100	86	2	279	34	22	19	23	1.97
5157650--5157699	12	3.9	12	82	10	55	30	10	2	58	1.42
5157651--5157710	25	2.3	27	80	13	72	31	8	3	56	1.45
5161644--5161688	23	2.0	23	90	0	72	31	33	6	28	1.83
5161664--5161750	44	2.0	44	88	0	129	32	20	18	28	1.96
5161672--5161926	138	1.8	138	79	0	294	30	20	21	28	1.98
5162080--5162125	14	3.3	14	77	22	60	78	10	0	10	0.97
5162080--5162126	15	3.3	15	76	11	62	78	10	0	10	0.96
5163587--5163611	12	2.1	12	100	0	50	24	8	0	68	1.16
5164332--5164374	17	2.6	16	82	7	59	11	11	4	72	1.27
5165289--5165319	3	10.3	3	100	0	62	35	0	0	64	0.94
5167685--5167784	19	5.3	19	73	7	87	33	26	22	19	1.97
5167690--5167784	38	2.5	38	79	3	111	33	26	21	18	1.96
5173569--5173602	10	3.4	10	91	0	50	47	14	2	35	1.60
5177880--5177967	9	9.6	9	75	3	77	28	3	1	67	1.14
5188272--5188355	15	5.8	14	72	12	71	52	29	1	16	1.52
5188272--5188354	7	11.4	7	75	5	58	51	30	1	16	1.52
5188280--5188355	29	2.6	29	83	4	82	52	28	1	17	1.52
5196341--5196387	20	2.5	20	86	6	62	40	0	29	29	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5202004--5202181	72	2.5	71	81	7	198	35	19	22	22	1.95
5215053--5215138	45	1.9	45	90	0	136	40	19	22	17	1.91
5215800--5215857	24	2.4	24	97	0	107	32	10	25	31	1.89
5216146--5216313	51	3.4	51	81	8	220	32	17	23	27	1.96
5216156--5216298	46	3.0	46	80	9	178	30	18	21	29	1.97
5217083--5217123	14	2.9	14	88	0	55	19	2	0	78	0.87
5217085--5217123	18	2.2	18	85	0	51	20	2	0	76	0.90
5219093--5219157	24	2.8	23	76	4	69	38	13	12	35	1.83
5219126--5219208	23	3.6	23	79	11	80	36	19	9	34	1.84
5222002--5222040	11	3.4	12	82	10	55	61	0	0	38	0.96
5226228--5226452	111	2.0	111	93	1	389	46	15	11	27	1.79
5229075--5229120	1	46.0	1	86	0	65	2	0	4	93	0.41
5229560--5229613	10	5.9	9	78	20	58	62	1	0	35	1.06
5229562--5229623	20	3.3	19	76	19	58	61	3	1	33	1.22
5229565--5229624	19	3.3	17	75	17	50	60	3	1	35	1.23
5230861--5230914	10	5.9	9	78	20	58	62	1	0	35	1.06
5230863--5230924	20	3.3	19	76	19	58	61	3	1	33	1.22
5230866--5230925	19	3.3	17	75	17	50	60	3	1	35	1.23
5233417--5233628	106	2.0	106	93	0	361	38	11	21	28	1.88
5234326--5234890	126	4.5	126	90	1	766	30	17	22	29	1.97
5238148--5238777	22	29.0	22	77	9	591	25	0	27	45	1.59
5238162--5238777	195	3.2	193	87	5	830	25	0	27	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5238651--5238703	16	3.5	16	80	7	58	22	0	30	47	1.52
5239279--5239322	18	2.4	18	84	0	61	47	9	27	15	1.76
5240856--5241050	98	2.0	98	92	0	327	27	10	25	36	1.89
5246125--5246836	44	16.2	44	65	10	247	30	19	25	25	1.98
5246123--5246942	132	6.2	132	95	0	1324	30	19	25	25	1.98
5249490--5249514	7	3.6	7	100	0	50	60	12	0	28	1.32
5252616--5252666	23	2.3	22	90	6	84	17	19	11	50	1.76
5254474--5254597	58	2.1	60	83	7	173	43	2	2	51	1.27
5254478--5254617	59	2.4	58	84	8	187	44	2	2	50	1.31
5257540--5257567	14	2.0	14	100	0	56	7	28	0	64	1.20
5257520--5257564	19	2.5	18	83	16	58	6	26	0	66	1.16
5259257--5259281	12	2.1	12	100	0	50	28	32	8	32	1.86
5261647--5261723	35	2.2	37	79	11	90	45	1	2	50	1.23
5262594--5262659	18	3.7	18	72	10	55	34	1	3	60	1.21
5267116--5267142	3	9.0	3	100	0	54	33	33	0	33	1.58
5269809--5269843	18	1.9	18	94	0	61	60	0	11	28	1.32
5270157--5270190	16	2.2	16	89	5	52	55	0	2	41	1.15
5271042--5271079	7	5.4	7	84	12	51	0	18	0	81	0.69
5271042--5271079	13	2.7	15	88	8	53	0	18	0	81	0.69
5276720--5276755	19	1.9	19	94	5	65	33	2	0	63	1.08
5276721--5276761	19	2.2	18	86	4	55	34	2	0	63	1.08
5278319--5278369	21	2.4	21	83	6	68	9	11	39	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5279026--5279079	28	1.9	28	88	0	81	50	14	5	29	1.66
5281290--5281371	6	13.7	6	82	0	92	59	14	4	20	1.53
5281288--5281383	18	5.3	18	74	9	79	57	13	7	21	1.61
5281844--5281883	21	1.9	21	94	0	71	22	30	20	27	1.98
5282424--5282450	9	3.0	9	100	0	54	44	0	0	55	0.99
5283762--5283791	5	6.0	5	100	0	60	80	0	0	20	0.72
5284556--5284594	19	2.1	19	85	9	53	74	2	7	15	1.15
5285049--5285073	5	5.0	5	100	0	50	80	0	0	20	0.72
5285838--5285876	19	2.1	19	85	9	53	74	2	7	15	1.15
5286425--5286536	45	2.5	44	76	9	111	23	24	24	28	2.00
5286482--5286925	143	3.1	143	85	1	604	27	22	20	29	1.99
5290023--5290255	47	4.8	47	88	7	349	24	31	18	25	1.97
5290023--5290255	101	2.4	94	90	5	358	24	31	18	25	1.97
5303169--5303213	9	5.0	9	88	0	72	44	17	11	26	1.82
5303166--5303213	18	2.7	18	100	0	96	45	16	10	27	1.80
5303525--5303563	14	2.8	14	88	0	51	41	15	2	41	1.61
5306602--5306682	41	2.0	41	87	0	117	50	1	8	39	1.41
5308417--5308480	23	2.8	23	85	4	85	23	31	21	23	1.99
5309649--5310221	301	1.9	300	83	5	753	34	13	11	39	1.81
5313575--5313616	21	2.0	21	85	0	57	52	9	19	19	1.72
5315598--5315672	19	3.8	19	91	6	114	36	18	10	34	1.86
5316019--5316297	89	3.2	89	88	3	429	28	25	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5316019--5316299	44	6.4	44	80	2	278	28	25	14	30	1.95
5316307--5316450	44	3.3	44	72	3	146	22	22	28	25	1.99
5316334--5316476	45	3.2	45	73	4	155	22	27	23	26	1.99
5316294--5316493	88	2.3	88	96	0	364	24	27	24	24	2.00
5316294--5316431	43	3.2	43	71	4	141	23	26	23	26	2.00
5316351--5316493	44	3.2	44	72	3	153	25	27	23	22	1.99
5316436--5316554	61	2.0	61	98	0	229	29	30	22	17	1.97
5316351--5316638	149	1.9	149	92	0	486	25	27	23	23	2.00
5316494--5316710	88	2.5	88	83	3	274	25	26	21	26	2.00
5318873--5318933	26	2.3	26	83	5	70	57	4	14	22	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75