genome.fa.s11.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  33  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10368366--10368511	34	4.3	34	81	1	159	32	13	13	41	1.83
10368618--10368813	45	4.4	44	73	7	153	25	18	21	34	1.96
10369891--10369957	31	2.2	31	78	10	75	37	16	5	40	1.73
10374670--10374797	62	2.0	63	98	1	249	41	4	10	43	1.59
10376222--10376436	96	2.2	96	80	2	225	40	3	17	39	1.66
10376480--10376766	126	2.3	126	88	1	432	33	19	19	27	1.96
10380128--10380168	21	2.0	21	85	0	55	2	24	41	31	1.68
10398529--10398577	25	2.0	25	87	0	71	34	18	10	36	1.85
10399176--10399256	40	2.0	42	82	4	103	23	20	28	27	1.99
10399359--10399669	97	3.2	95	87	3	444	42	2	17	37	1.63
10399718--10399758	19	2.2	19	86	8	57	51	2	2	43	1.28
10405526--10405564	17	2.3	17	90	0	60	23	23	28	25	1.99
10411403--10411447	20	2.2	20	92	0	72	37	2	8	51	1.46
10413755--10413806	16	3.2	16	75	5	52	30	23	3	42	1.72
10415109--10415169	28	2.2	28	93	0	104	22	32	21	22	1.98
10415182--10415285	34	3.1	34	84	1	138	27	17	25	28	1.97
10416507--10416553	21	2.2	21	92	0	76	44	4	12	38	1.62
10420619--10420677	30	2.0	30	93	0	100	30	20	13	35	1.91
10420873--10421024	69	2.2	69	84	0	196	28	25	17	28	1.97
10432128--10432173	9	5.1	9	86	0	56	34	10	39	15	1.82
10432235--10432318	39	2.2	39	100	0	168	36	3	14	45	1.62
10432256--10432319	20	3.2	20	71	20	71	39	3	15	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10432237--10432298	19	3.2	19	70	20	65	35	1	12	50	1.51
10436143--10436365	111	2.0	110	94	0	392	31	13	4	51	1.59
10438319--10438723	207	2.0	207	100	0	810	26	30	22	20	1.98
10438802--10438843	18	2.3	18	91	0	66	21	33	21	23	1.97
10440418--10440598	45	4.0	45	100	0	362	33	13	17	35	1.89
10444041--10444065	5	5.0	5	100	0	50	80	0	0	20	0.72
10445157--10445194	20	1.9	20	94	0	67	21	28	10	39	1.86
10448033--10448096	32	2.0	32	87	0	92	20	15	20	43	1.87
10451019--10451054	4	8.8	4	87	6	54	72	0	2	25	0.98
10452448--10452482	18	1.9	18	88	0	52	20	22	28	28	1.98
10453178--10453241	32	2.0	32	87	0	92	31	23	18	26	1.98
10453210--10454159	44	21.5	44	74	6	731	30	24	16	29	1.96
10453208--10454166	132	7.2	133	90	1	1435	29	24	16	29	1.96
10457702--10457881	90	2.0	91	98	1	353	28	18	13	38	1.89
10466440--10466468	3	9.7	3	100	0	58	65	0	0	34	0.93
10466916--10466958	23	1.9	22	90	4	68	41	13	4	39	1.66
10466916--10467013	19	4.8	19	82	9	97	39	15	8	36	1.77
10466950--10467012	21	3.1	21	86	9	103	39	14	9	36	1.78
10474660--10474702	22	2.0	22	86	8	63	18	27	4	48	1.68
10479533--10479621	44	2.0	44	86	4	124	39	29	3	28	1.73
10479522--10479639	46	2.7	43	77	13	102	38	28	4	27	1.75
10480321--10480384	16	4.1	16	89	2	85	35	3	35	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10483870--10483908	19	2.1	19	95	0	69	43	10	46	0	1.37
10490566--10490622	12	4.8	12	82	0	60	26	47	12	14	1.79
10490568--10490667	24	4.2	24	74	7	69	29	46	11	14	1.78
10498553--10498587	16	2.1	17	89	5	54	45	0	11	42	1.40
10498576--10498610	18	1.9	18	94	0	61	48	0	0	51	1.00
10506448--10506584	69	2.0	69	85	0	184	34	23	24	18	1.96
10507736--10508566	434	1.9	434	99	0	1644	38	20	7	33	1.80
10509467--10509584	42	2.8	42	82	6	114	30	27	19	22	1.98
10515026--10515083	18	2.8	20	80	15	57	43	1	1	53	1.21
10530735--10530785	25	2.0	25	92	0	84	39	9	0	50	1.35
10532856--10532916	30	2.0	30	100	0	122	59	9	0	31	1.30
10540862--10540900	20	2.0	19	85	5	51	48	5	5	41	1.47
10547991--10548176	43	4.3	43	91	0	293	32	32	16	17	1.93
10549023--10549101	19	4.2	19	90	0	131	39	8	13	37	1.77
10551029--10551237	104	2.0	104	100	0	418	31	22	18	28	1.97
10551987--10552032	24	1.9	24	86	0	65	45	17	26	10	1.81
10554272--10554307	8	4.5	8	86	13	56	88	11	0	0	0.50
10554271--10554307	9	4.4	9	86	13	53	89	10	0	0	0.49
10554269--10554307	16	2.6	16	92	8	64	89	10	0	0	0.48
10555989--10556751	132	5.8	132	91	0	1170	29	18	22	29	1.97
10557081--10557245	19	8.5	19	87	4	231	41	6	11	40	1.66
10566040--10566092	21	2.8	18	85	8	61	54	18	13	13	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10566238--10566444	14	14.4	14	69	13	73	46	30	1	20	1.61
10566333--10566386	7	7.6	7	81	4	63	50	31	0	18	1.48
10566625--10567069	41	10.9	41	90	0	561	29	30	18	22	1.97
10579339--10579376	20	2.0	19	90	10	60	50	10	7	31	1.66
10581732--10581921	29	6.7	29	75	8	142	21	16	11	51	1.76
10582875--10582964	37	2.4	36	81	7	101	28	6	20	44	1.76
10583956--10584017	20	3.1	20	83	0	70	50	8	6	35	1.58
10591022--10591061	18	2.0	21	86	13	59	62	0	2	35	1.09
10591168--10591357	94	2.0	95	97	2	364	54	6	7	31	1.53
10594175--10594263	45	2.0	45	95	0	160	24	17	24	32	1.97
10594994--10595020	10	2.7	10	100	0	54	66	0	7	25	1.17
10596832--10596870	10	3.9	10	93	0	60	56	28	5	10	1.54
10596832--10596869	20	1.9	20	94	0	67	55	28	5	10	1.56
10597087--10597198	50	2.2	49	90	7	181	46	20	8	25	1.78
10597551--10597580	15	2.1	14	93	6	51	36	23	6	33	1.81
10597783--10597837	22	2.5	22	82	5	67	36	21	27	14	1.93
10600645--10600702	29	2.0	29	96	0	107	46	17	6	29	1.74
10602180--10602215	16	2.2	16	100	0	72	25	0	36	38	1.56
10602451--10602485	18	2.0	17	88	5	52	54	0	0	45	0.99
10609940--10609965	13	2.0	13	100	0	52	61	7	30	0	1.24
10609979--10610004	13	2.0	13	100	0	52	61	7	30	0	1.24
10611231--10611280	3	16.7	3	91	0	73	28	2	4	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10624134--10624199	15	4.5	15	81	5	82	83	0	16	0	0.65
10624134--10624199	9	6.9	9	83	13	87	83	0	16	0	0.65
10625445--10625590	44	3.3	44	80	0	184	28	21	26	23	1.99
10625433--10625606	88	2.0	88	87	0	249	29	18	27	23	1.98
10625583--10625746	88	1.9	88	88	5	251	26	23	27	23	2.00
10625600--10625754	45	3.5	44	67	17	122	27	22	27	22	1.99
10625733--10626707	126	7.6	126	90	2	1299	29	19	23	28	1.98
10625733--10626705	258	3.8	252	88	3	1349	29	18	23	28	1.98
10625733--10626707	384	2.5	384	90	1	1477	29	19	23	28	1.98
10628147--10628180	6	5.7	6	85	0	50	11	5	0	82	0.83
10628143--10628183	12	3.5	11	81	12	55	9	9	0	80	0.91
10627424--10628312	442	2.0	437	95	1	1602	29	23	13	33	1.92
10635824--10635889	3	22.0	3	77	11	64	30	4	1	63	1.23
10638356--10638405	21	2.4	21	80	6	57	20	30	22	28	1.98
10645988--10646406	27	15.5	27	83	2	500	41	22	17	18	1.90
10647574--10647822	54	4.6	54	98	0	480	30	26	18	24	1.98
10657086--10657120	17	2.1	17	88	0	52	40	2	0	57	1.14
10657401--10657430	15	2.0	15	93	0	51	30	0	0	70	0.88
10657696--10657760	25	2.6	25	87	7	87	41	7	12	38	1.71
10657714--10657766	25	2.1	25	100	0	106	39	7	7	45	1.61
10666736--10666905	27	6.3	27	83	2	209	46	20	13	20	1.83
10666727--10666905	81	2.2	81	85	2	234	46	19	13	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10667070--10667123	26	2.1	26	85	0	72	20	22	20	37	1.95
10667234--10667319	28	3.1	28	91	0	118	19	18	26	34	1.95
10667220--10667296	28	2.5	33	72	24	85	22	19	23	35	1.96
10671423--10671482	30	2.0	30	93	0	102	16	35	8	40	1.79
10672384--10672462	27	2.9	27	90	0	131	43	22	16	17	1.88
10672384--10672491	27	4.0	27	83	7	112	40	21	17	20	1.91
10672384--10672488	54	1.9	54	84	3	140	41	20	17	20	1.90
10674727--10674859	68	1.9	72	87	6	202	39	3	5	51	1.40
10677316--10677408	36	2.5	35	80	13	98	43	3	23	30	1.70
10677319--10677408	37	2.4	37	83	7	103	42	3	23	31	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75