genome.fa.s11.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  64  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20512144--20512180	9	4.1	9	89	0	56	48	13	8	29	1.71
20513602--20513639	17	2.2	17	86	9	51	23	2	2	71	1.12
20513599--20513640	16	2.4	17	80	15	50	23	2	2	71	1.10
20514062--20514107	23	2.0	22	84	12	58	56	2	2	39	1.24
20514963--20514997	16	2.1	16	89	10	52	71	2	25	0	1.00
20518149--20518565	62	6.7	62	88	2	579	35	5	10	48	1.62
20519725--20519752	14	2.0	14	100	0	56	35	7	21	35	1.81
20530915--20530970	16	3.5	16	90	0	94	28	28	5	37	1.79
20531554--20531630	20	3.8	20	74	6	66	40	20	27	11	1.87
20534141--20534179	19	2.1	19	100	0	78	20	33	25	20	1.97
20536185--20536343	24	7.0	24	71	11	118	30	25	19	24	1.98
20536158--20536295	64	2.2	64	94	0	240	29	26	18	25	1.98
20546000--20546024	7	3.6	7	100	0	50	56	0	12	32	1.36
20546132--20546177	19	2.4	19	79	17	51	45	0	10	43	1.39
20546233--20546302	36	1.9	36	97	0	131	14	15	28	41	1.86
20548078--20548111	17	2.0	17	88	0	50	44	11	8	35	1.72
20556325--20556381	3	19.3	3	83	3	71	3	1	61	33	1.23
20564219--20564390	93	1.8	93	83	0	227	15	18	27	38	1.91
20564373--20564424	3	17.3	3	77	0	50	1	3	36	57	1.28
20565137--20565192	24	2.2	26	78	15	64	55	1	39	3	1.28
20566118--20566166	22	2.2	23	96	3	91	55	0	6	38	1.25
20578397--20578465	24	2.9	24	86	0	102	27	13	17	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20580775--20580821	3	16.0	3	91	4	78	34	63	2	0	1.06
20590574--20590613	20	1.9	22	90	10	66	52	0	0	47	1.00
20596427--20596668	50	4.8	50	84	0	313	26	21	29	22	1.99
20596432--20596719	50	5.8	48	74	10	145	27	21	27	23	1.99
20609062--20609108	22	2.1	22	100	0	94	19	25	38	17	1.92
20612741--20612802	16	3.9	16	78	0	70	29	27	1	41	1.65
20612731--20612795	32	2.0	32	84	0	85	24	27	3	44	1.68
20620048--20620112	19	3.1	21	80	12	80	40	16	6	36	1.74
20620038--20620112	19	3.5	22	79	12	68	42	16	5	36	1.70
20620074--20620127	19	2.8	19	91	0	90	38	14	9	37	1.79
20622693--20622756	27	2.4	27	81	0	74	42	23	18	15	1.89
20624369--20624582	74	2.9	74	84	3	263	47	8	6	37	1.60
20630397--20630475	42	1.9	41	89	7	124	29	29	18	22	1.98
20634711--20634745	16	2.1	17	89	5	54	45	0	11	42	1.40
20641622--20641745	60	2.0	60	83	6	151	45	16	16	20	1.86
20644268--20644325	11	5.4	11	77	2	55	12	3	15	68	1.32
20648276--20648337	22	3.0	21	79	9	65	25	3	19	51	1.62
20655584--20656033	38	11.8	38	100	0	900	36	10	20	31	1.87
20658523--20658573	24	2.1	24	82	17	61	49	3	7	39	1.51
20658536--20658604	31	2.2	31	85	10	88	53	2	7	36	1.44
20661388--20661465	29	2.6	29	87	8	102	30	6	60	2	1.35
20672031--20672125	20	4.8	20	81	10	113	35	7	15	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20673786--20673838	13	4.1	13	85	0	79	35	28	7	28	1.84
20681494--20681545	22	2.4	21	81	12	61	48	1	1	48	1.24
20683425--20683511	20	4.6	19	73	20	83	62	1	0	36	1.03
20683412--20683519	9	11.8	9	70	19	64	62	0	0	35	1.08
20683634--20683687	19	2.8	19	77	2	54	27	0	1	70	0.98
20685101--20685366	134	2.0	132	85	1	352	30	19	7	42	1.79
20687598--20687628	14	2.2	14	100	0	62	32	45	16	6	1.72
20695432--20695577	60	2.4	60	82	4	179	22	19	17	40	1.91
20695469--20695546	31	2.6	29	75	11	86	21	17	16	43	1.88
20695462--20695566	29	3.6	28	73	10	93	20	18	19	42	1.89
20695593--20695717	31	4.1	31	76	6	119	24	19	14	41	1.88
20705953--20705978	3	8.7	3	100	0	52	30	0	0	69	0.89
20706102--20706987	447	2.0	440	94	2	1569	29	9	9	52	1.64
20717275--20717310	16	2.2	16	90	9	56	77	0	2	19	0.88
20717443--20717507	33	2.0	33	84	0	85	40	23	4	32	1.75
20718317--20718533	107	2.0	107	94	1	382	38	11	18	31	1.87
20719818--20719882	33	2.0	33	84	0	85	32	4	23	40	1.75
20729352--20729398	24	1.9	25	91	4	78	27	34	6	31	1.82
20731112--20731163	20	2.7	19	74	11	52	46	0	1	51	1.12
20733751--20733795	24	1.9	23	82	13	56	31	22	0	46	1.52
20735905--20735961	28	2.0	29	96	3	107	35	17	17	29	1.93
20738951--20738998	13	3.6	13	75	13	53	81	4	12	2	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20764743--20764814	32	2.3	30	83	9	83	40	9	11	38	1.74
20765854--20765933	31	2.7	29	84	5	88	32	2	13	51	1.55
20766148--20766177	2	15.0	2	100	0	60	50	0	0	50	1.00
20768510--20768547	16	2.4	16	86	8	51	42	0	2	55	1.14
20772857--20772893	3	12.3	3	94	0	65	70	0	29	0	0.88
20774091--20774118	4	7.0	4	100	0	56	75	0	25	0	0.81
20776276--20776322	20	2.2	22	88	7	71	51	0	0	48	1.00
20779421--20779449	15	1.9	15	100	0	58	41	13	6	37	1.72
20788490--20788549	29	2.0	30	96	3	113	36	3	20	40	1.69
20803198--20803250	19	3.0	17	73	10	52	35	9	20	33	1.85
20803222--20803279	22	2.7	21	81	7	71	36	5	17	41	1.72
20807262--20807798	41	13.1	41	99	0	1056	46	14	9	29	1.76
20810143--20810173	14	2.1	15	94	5	55	19	12	6	61	1.53
20812681--20812724	22	2.0	21	83	12	54	31	6	13	47	1.69
20813359--20813497	65	2.2	64	96	1	251	53	11	6	28	1.61
20814505--20814534	16	1.9	15	93	6	51	13	10	16	60	1.59
20815590--20815621	13	2.5	13	100	0	64	46	0	12	40	1.42
20816703--20816770	25	2.7	25	81	4	84	20	32	17	29	1.96
20825781--20825806	8	3.2	8	100	0	52	42	0	23	34	1.54
20831872--20831966	39	2.4	39	94	1	163	33	3	0	63	1.10
20837990--20838014	13	1.9	13	100	0	50	84	0	8	8	0.79
20838650--20838691	9	4.5	10	80	14	54	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20838657--20838690	17	1.9	18	88	5	52	23	0	0	76	0.79
20838640--20838691	18	2.9	18	77	8	61	26	0	1	71	0.97
20840573--20840637	32	2.0	32	96	0	121	26	21	16	35	1.95
20844173--20844210	18	2.1	19	90	5	60	18	5	2	73	1.14
20855648--20855686	7	5.6	7	100	0	78	41	30	0	28	1.57
20863114--20863168	25	2.2	26	87	9	78	67	1	20	10	1.30
20868757--20868827	24	2.9	24	75	8	72	18	28	19	33	1.95
20868906--20868962	26	2.2	26	77	0	60	19	21	15	43	1.87
20874488--20874529	21	2.0	21	100	0	84	42	0	19	38	1.51
20874490--20874552	21	3.0	21	86	2	74	47	0	14	38	1.44
20874696--20874724	10	2.7	11	94	5	51	41	0	20	37	1.53
20875227--20875344	25	4.8	25	72	7	91	18	27	22	31	1.97
20875227--20875367	73	1.9	73	85	2	194	19	26	22	31	1.98
20875217--20875380	73	2.2	73	79	3	186	17	26	22	32	1.96
20875836--20875865	15	2.0	15	100	0	60	46	20	6	26	1.75
20881402--20881432	16	1.9	16	93	0	53	0	38	0	61	0.96
20883336--20883369	6	5.7	6	92	0	50	23	38	20	17	1.93
20889856--20889904	6	8.2	6	100	0	98	32	16	0	51	1.45
20892459--20892484	12	2.2	12	100	0	52	42	7	7	42	1.62
20892754--20892833	26	3.1	26	98	1	153	30	13	11	45	1.79
20904210--20904272	32	2.0	32	87	6	92	38	6	7	47	1.58
20904205--20904275	32	2.3	29	76	17	72	40	7	7	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20904176--20904442	145	1.8	145	83	0	354	37	9	10	41	1.72
20906320--20906740	114	3.7	114	77	5	384	35	16	21	26	1.94
20906955--20907141	76	2.5	76	84	4	234	33	17	19	28	1.95
20907244--20907308	20	3.1	20	77	6	67	23	4	26	46	1.71
20909791--20910336	116	4.8	114	79	4	528	31	18	24	26	1.97
20909791--20910295	228	2.2	228	81	4	581	31	18	23	26	1.97
20910849--20910998	81	1.9	81	85	5	214	26	2	26	45	1.64
20913623--20913647	7	3.6	7	100	0	50	0	0	52	48	1.00
20913955--20914278	147	2.2	147	80	5	343	24	14	24	36	1.93
20914236--20914321	43	2.0	43	90	4	138	25	17	19	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75