genome.fa.s11.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  59  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18928101--18928138	9	4.3	9	86	6	60	34	0	0	65	0.93
18928102--18928135	17	1.9	18	94	5	61	38	0	0	61	0.96
18928303--18928369	9	7.4	9	80	9	75	22	4	0	73	1.01
18928296--18928369	27	2.7	27	82	14	89	22	4	1	71	1.10
18929615--18929656	20	2.1	20	86	0	57	47	0	7	45	1.30
18931702--18931735	15	2.2	16	89	5	52	38	0	14	47	1.45
18937433--18937488	20	2.7	21	81	13	53	69	7	12	10	1.36
18937444--18937488	21	2.1	23	88	12	69	68	8	8	13	1.38
18940302--18940387	34	2.5	35	86	1	120	40	15	24	19	1.90
18942984--18943057	32	2.3	32	90	0	112	39	21	6	32	1.80
18946399--18946431	12	3.0	11	87	12	50	81	0	9	9	0.87
18946572--18946615	16	2.7	16	89	3	61	11	4	2	81	0.92
18947257--18947382	35	3.6	34	70	6	92	23	19	23	34	1.96
18947272--18947442	71	2.4	71	83	1	209	22	21	22	33	1.97
18959621--18959780	40	4.0	40	85	1	194	30	25	22	22	1.99
18960476--18960631	52	3.1	52	63	19	141	37	20	3	39	1.69
18960423--18960757	97	3.5	97	95	1	577	37	19	2	40	1.67
18972796--18972838	17	2.5	17	77	11	52	37	6	0	55	1.27
18977791--18977834	23	1.9	22	82	17	54	36	25	0	38	1.56
18977880--18977967	45	2.0	45	95	0	158	32	23	18	25	1.97
18977978--18978134	51	3.1	50	70	8	138	32	26	15	25	1.95
18979610--18979668	30	1.9	31	83	10	77	11	15	11	61	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18987411--18987448	20	2.0	20	89	5	60	55	2	7	34	1.43
18988789--18988910	37	3.1	39	74	12	124	32	22	19	25	1.97
18989907--18989955	7	7.0	7	100	0	98	57	0	0	42	0.99
18992243--18992336	38	2.4	39	80	7	102	38	20	21	20	1.94
18993455--18993501	21	2.2	22	88	3	69	19	0	40	40	1.51
18993437--18993532	28	3.4	28	75	5	70	25	0	33	41	1.55
18993521--18993575	7	7.7	7	85	4	56	21	0	47	30	1.51
18993520--18993581	7	8.7	7	83	3	52	20	0	43	35	1.53
18993539--18993581	14	3.1	14	89	0	59	20	0	41	37	1.53
18996926--18997013	43	2.0	44	86	2	124	32	11	10	45	1.74
18997382--18997588	43	4.8	43	83	1	238	27	15	29	27	1.96
18997382--18997588	86	2.4	86	86	0	281	27	15	29	27	1.96
19000585--19000609	2	12.5	2	100	0	50	48	52	0	0	1.00
19001772--19001833	34	1.9	33	81	12	76	48	1	1	48	1.21
19001824--19001872	20	2.6	18	80	9	53	51	4	0	44	1.20
19011665--19011693	15	1.9	15	100	0	58	48	0	0	51	1.00
19012281--19012376	39	2.5	39	87	0	147	29	18	14	37	1.91
19013439--19013468	12	2.4	12	94	5	51	26	16	16	40	1.90
19016723--19016832	39	2.7	42	82	13	151	30	16	16	37	1.91
19016740--19016832	39	2.4	39	92	0	159	30	19	12	37	1.89
19016845--19016897	16	3.3	16	72	27	58	18	32	3	45	1.68
19023149--19023616	37	12.6	37	80	10	471	25	22	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19023149--19023609	76	6.2	71	80	10	405	25	22	15	36	1.93
19023149--19023609	72	6.2	74	81	10	498	25	22	15	36	1.93
19025040--19025084	22	2.0	22	95	0	81	44	22	17	15	1.86
19029403--19029493	44	2.1	44	95	0	164	27	13	13	46	1.80
19031675--19031945	115	2.4	115	87	6	365	48	6	4	40	1.48
19037199--19037415	114	1.9	114	84	7	289	50	6	4	39	1.47
19037811--19037853	18	2.4	18	84	0	50	48	9	23	18	1.76
19037914--19037970	30	1.9	30	85	0	78	5	14	47	33	1.66
19042685--19042739	21	2.5	22	82	11	60	74	10	14	0	1.07
19042681--19042736	23	2.3	24	79	14	62	75	10	14	0	1.06
19043548--19043589	3	14.0	3	90	9	68	33	0	0	66	0.92
19043545--19043586	21	2.0	21	100	0	84	33	0	0	66	0.92
19043835--19043878	22	2.0	23	86	4	63	38	6	2	52	1.41
19048334--19048375	22	1.9	22	85	9	59	42	9	7	40	1.65
19052265--19052336	31	2.3	31	90	0	108	33	25	12	29	1.92
19052322--19052359	20	1.9	20	94	0	67	28	31	7	31	1.86
19052498--19052569	31	2.3	31	85	0	99	34	22	11	31	1.89
19052261--19052728	233	2.0	233	96	0	864	39	23	10	26	1.86
19052555--19052592	20	1.9	20	100	0	76	31	31	5	31	1.80
19053471--19053527	29	1.9	31	85	7	82	49	10	12	28	1.73
19053471--19053536	30	2.2	31	81	8	73	53	9	10	27	1.65
19054219--19054243	11	2.3	11	100	0	50	68	0	8	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19054822--19054866	19	2.3	20	80	3	56	60	4	11	24	1.49
19063690--19063733	17	2.6	18	82	10	56	63	0	2	34	1.07
19063694--19063732	16	2.4	16	84	16	53	64	0	2	33	1.08
19073410--19073449	15	2.6	16	84	4	55	37	2	0	60	1.11
19077846--19077901	18	2.9	19	79	10	69	30	21	19	28	1.98
19087555--19087621	34	1.9	35	85	8	93	34	17	22	25	1.96
19093215--19093402	95	2.0	95	91	0	304	30	34	2	32	1.72
19099889--19100077	95	2.0	94	91	1	306	31	35	2	30	1.72
19103689--19103729	20	2.0	20	100	0	82	24	4	14	56	1.58
19113649--19113685	19	2.0	18	89	5	56	67	5	0	27	1.12
19115497--19115555	24	2.3	26	85	8	77	42	8	10	38	1.69
19116652--19116684	14	2.4	14	90	5	50	39	12	3	45	1.57
19117952--19117990	18	2.2	18	90	0	60	23	10	10	56	1.63
19119120--19119356	126	1.9	130	79	7	279	32	16	16	33	1.92
19119579--19119622	23	1.9	23	90	0	70	54	4	9	31	1.52
19119769--19119818	26	1.9	26	84	8	66	50	6	16	28	1.68
19121607--19122046	44	9.6	44	68	12	167	27	23	19	29	1.98
19127403--19127675	136	2.0	136	87	5	395	16	28	30	23	1.96
19133569--19133604	14	2.6	14	90	0	63	58	8	13	19	1.61
19138707--19138768	31	2.0	32	84	6	83	45	0	14	40	1.45
19139319--19139436	25	4.7	26	80	8	93	16	27	22	33	1.95
19141841--19141899	21	2.8	20	80	14	57	55	3	0	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19141870--19141958	38	2.3	38	94	1	151	65	1	0	33	1.00
19146979--19147215	117	2.0	118	99	0	467	55	2	9	32	1.45
19149343--19149594	138	1.8	138	87	0	378	36	11	19	31	1.88
19149986--19150033	22	2.2	21	78	10	51	54	0	12	33	1.38
19152103--19152142	17	2.3	18	91	4	64	67	5	5	22	1.30
19154703--19154784	41	2.0	41	90	2	130	37	28	1	32	1.65
19160269--19160366	44	2.2	44	80	3	108	31	27	17	23	1.97
19160672--19160701	15	2.0	15	93	0	51	3	20	0	76	0.92
19160887--19160915	8	3.6	8	100	0	58	51	13	0	34	1.42
19168148--19168237	42	2.1	42	85	4	126	32	26	17	23	1.97
19171031--19171062	14	2.3	14	94	0	55	43	9	21	25	1.82
19172202--19172242	10	4.1	10	87	9	57	58	2	2	36	1.24
19173915--19173951	18	2.1	18	100	0	74	35	10	32	21	1.88
19174367--19174412	18	2.5	17	83	13	56	69	6	4	19	1.28
19191827--19191874	24	2.0	24	95	0	87	31	33	22	12	1.91
19193222--19193275	27	2.0	27	92	0	90	22	25	14	37	1.93
19193290--19193465	53	3.3	53	91	0	282	27	22	10	39	1.86
19193290--19193465	26	6.7	27	71	4	144	27	22	10	39	1.86
19198726--19198840	60	1.9	61	90	1	187	21	22	18	37	1.94
19201894--19202086	101	1.9	99	85	2	260	31	17	25	25	1.97
19201962--19202086	33	3.8	33	73	9	103	30	17	27	24	1.97
19208229--19208275	20	2.3	20	88	0	67	40	2	0	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19210356--19210407	18	3.0	17	78	13	52	46	0	0	53	1.00
19210375--19210407	15	2.1	16	88	11	50	45	0	0	54	0.99
19213304--19213390	43	2.0	43	84	4	113	35	6	21	35	1.81
19214280--19214335	13	4.2	13	86	8	85	42	10	21	25	1.85
19214272--19214334	28	2.2	28	97	0	117	39	14	19	26	1.90
19214924--19215107	43	4.3	43	79	4	219	32	25	17	24	1.97
19215263--19215293	4	8.0	4	92	7	55	74	0	0	25	0.82
19215597--19215678	32	2.6	32	90	1	130	45	15	9	29	1.79
19238527--19238743	100	2.2	101	85	2	285	40	11	18	29	1.86
19238567--19238778	101	2.1	98	81	6	239	41	11	18	28	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75