genome.fa.s11.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  32  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10016419--10016476	21	2.7	21	79	12	57	32	0	32	34	1.58
10027016--10027058	22	2.0	22	95	0	77	41	27	20	9	1.83
10030183--10030232	25	2.0	25	100	0	100	24	16	20	40	1.91
10030713--10030775	18	3.3	19	84	8	76	31	0	4	63	1.15
10034368--10034416	19	2.5	19	80	3	53	40	0	12	46	1.41
10038857--10038917	32	1.9	32	83	12	81	49	8	1	40	1.42
10044925--10044968	18	2.4	18	88	0	61	65	2	2	29	1.16
10044918--10044972	10	6.1	9	74	16	51	67	1	1	29	1.11
10048862--10048932	35	2.0	35	100	0	142	32	19	11	36	1.87
10048983--10049112	40	3.3	40	91	1	208	33	18	27	20	1.96
10050694--10050975	42	6.6	42	86	3	352	32	20	22	23	1.98
10050706--10050975	85	3.2	84	88	2	362	33	20	21	24	1.97
10057557--10057691	67	2.0	67	95	2	245	45	13	4	36	1.63
10062267--10062386	42	2.9	42	76	6	127	35	21	16	25	1.94
10065245--10065288	21	2.1	21	84	16	56	52	4	2	40	1.34
10066793--10066824	11	2.9	11	95	0	55	28	31	0	40	1.57
10066787--10066831	22	2.0	22	83	8	56	26	31	2	40	1.68
10070485--10070771	126	2.3	125	87	0	412	28	19	17	34	1.94
10070808--10071296	97	5.1	96	88	4	650	39	18	2	39	1.65
10075535--10075656	40	3.1	39	80	4	122	35	20	20	23	1.96
10075709--10075822	40	2.8	40	84	6	149	28	22	20	28	1.98
10076373--10076409	15	2.5	15	95	0	65	16	10	18	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10078040--10078076	3	12.3	3	100	0	74	32	0	0	67	0.91
10079568--10079783	18	12.0	18	99	0	423	16	22	11	49	1.77
10081047--10081106	18	3.4	18	64	13	52	43	6	10	40	1.64
10081300--10081431	43	3.0	44	85	6	180	21	18	30	30	1.97
10090617--10090730	50	2.3	50	82	0	147	26	25	28	20	1.99
10096420--10096653	50	4.6	50	79	4	202	26	20	29	23	1.99
10101742--10101804	22	3.0	21	84	11	76	36	7	17	38	1.79
10101755--10101812	22	2.7	23	81	7	68	37	5	17	39	1.72
10102002--10102046	23	2.0	23	81	0	54	22	0	15	62	1.33
10102417--10102451	18	1.9	18	88	0	52	34	28	17	20	1.95
10102545--10102593	20	2.5	20	82	0	53	69	10	16	4	1.32
10103608--10103658	25	2.0	25	81	7	59	35	1	3	58	1.28
10107655--10108161	44	11.8	44	84	6	646	26	16	26	30	1.97
10107826--10108161	121	2.7	122	85	7	401	25	16	26	31	1.96
10107782--10108113	165	2.0	165	88	2	497	25	17	25	31	1.97
10107948--10108164	87	2.5	87	87	1	310	26	14	27	31	1.95
10108143--10108533	89	4.4	88	81	3	354	29	18	25	26	1.98
10108257--10108386	44	2.9	45	69	15	124	27	19	26	26	1.99
10108480--10108874	131	3.0	130	87	4	555	28	19	25	26	1.99
10108482--10108817	44	7.7	44	67	11	161	28	19	24	27	1.99
10109316--10109369	19	2.8	19	94	0	99	37	9	16	37	1.81
10109316--10109392	19	3.7	22	84	10	76	36	7	16	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10109596--10109640	23	2.0	23	81	0	54	22	0	15	62	1.33
10117629--10117678	21	2.4	20	93	6	82	26	14	10	50	1.73
10121907--10121963	29	1.9	30	82	10	73	77	3	10	8	1.11
10122081--10122110	12	2.6	11	90	10	51	80	0	20	0	0.72
10126223--10126260	20	1.9	20	88	0	58	71	5	2	21	1.19
10135764--10135795	15	2.0	17	88	11	50	62	9	0	28	1.26
10135849--10135900	25	2.0	26	82	10	63	46	9	3	40	1.55
10137491--10137553	28	2.2	28	100	0	126	42	15	0	41	1.47
10137491--10137561	28	2.5	28	93	4	108	45	15	0	39	1.46
10140164--10140205	20	2.1	20	82	8	50	45	0	7	47	1.30
10142682--10142937	129	2.0	129	99	0	503	41	8	8	41	1.67
10146387--10146430	23	1.9	22	82	17	54	36	25	0	38	1.56
10146475--10146562	45	2.0	45	90	4	142	32	23	17	26	1.96
10146564--10146704	50	2.8	51	78	13	166	29	26	19	24	1.98
10159896--10160868	276	3.5	276	98	0	1869	40	8	5	45	1.57
10159894--10160868	138	7.1	137	91	3	1571	40	8	5	45	1.57
10160929--10160962	17	2.0	17	94	0	59	55	5	0	38	1.24
10185736--10185785	23	2.2	23	85	0	64	50	20	12	18	1.78
10190056--10190201	40	3.7	39	84	3	193	32	23	14	29	1.94
10190645--10190680	18	1.9	19	88	5	56	44	2	19	33	1.65
10191518--10191558	22	1.9	21	90	5	64	36	0	7	56	1.27
10191505--10191565	22	2.9	21	75	7	61	39	1	8	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10193219--10193251	17	2.0	16	94	5	57	36	0	3	60	1.12
10200730--10200773	3	15.0	3	95	4	81	34	0	0	65	0.93
10202976--10203099	25	5.0	25	62	0	68	20	12	26	39	1.89
10202978--10203278	50	6.0	50	80	2	300	22	15	26	35	1.94
10202979--10203269	100	2.9	100	81	2	332	22	15	25	35	1.94
10202979--10203252	150	1.8	150	84	1	370	22	15	26	35	1.94
10204707--10204741	14	2.5	14	90	9	54	65	0	17	17	1.27
10206451--10206495	20	2.2	21	88	4	65	51	11	13	24	1.73
10210995--10211024	10	3.1	10	95	4	53	36	0	10	53	1.35
10211228--10211305	37	2.1	37	82	0	93	16	14	26	42	1.86
10225133--10225256	57	2.2	58	83	1	160	44	6	20	28	1.76
10225720--10225755	17	2.0	19	89	10	58	11	25	0	63	1.27
10226519--10226609	38	2.4	38	78	7	112	31	14	16	37	1.89
10228303--10228340	19	2.0	19	94	0	67	55	5	5	34	1.45
10229159--10229193	17	2.1	17	88	0	52	14	8	2	74	1.17
10238030--10238139	51	2.1	52	86	1	150	42	7	21	28	1.79
10253544--10253736	95	2.0	97	97	2	372	43	17	13	25	1.86
10259503--10259551	18	2.5	20	80	12	57	69	6	0	24	1.11
10259741--10259797	20	3.0	19	82	12	64	77	10	7	5	1.12
10259749--10259784	17	2.1	17	89	0	54	77	8	8	5	1.11
10263536--10263598	33	1.9	32	87	9	92	28	19	25	26	1.98
10286194--10286230	17	2.1	18	90	5	58	29	24	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10286944--10287015	1	72.0	1	77	0	54	86	2	0	11	0.68
10286944--10287013	9	7.9	9	84	9	99	85	2	0	11	0.69
10286944--10287015	17	4.2	16	85	13	92	86	2	0	11	0.68
10286944--10287012	26	2.6	26	88	8	104	85	2	0	11	0.70
10286944--10287013	27	2.6	28	91	6	110	85	2	0	11	0.69
10287033--10287075	6	7.0	6	85	15	61	81	0	18	0	0.69
10287024--10287074	25	2.1	25	92	3	86	82	0	15	1	0.76
10289462--10289802	100	3.4	100	89	2	481	31	22	21	23	1.98
10289723--10289852	50	2.6	50	98	0	251	33	21	19	26	1.97
10290654--10290784	44	3.0	44	85	4	158	32	19	19	28	1.96
10302755--10302817	28	2.2	28	86	5	83	33	12	26	26	1.93
10308190--10308243	24	2.2	24	83	3	63	62	3	3	29	1.29
10317088--10317117	8	3.6	8	91	8	51	0	13	0	86	0.57
10324848--10325042	50	3.9	50	74	6	153	24	17	23	34	1.96
10324842--10325045	100	2.0	100	85	1	275	23	17	23	35	1.95
10325164--10325287	44	2.8	45	80	7	130	28	21	20	29	1.98
10325208--10325636	175	2.5	175	90	0	671	27	19	19	33	1.96
10325063--10325462	219	1.8	219	94	1	712	28	20	18	33	1.96
10325081--10325763	219	3.1	216	77	6	502	27	20	18	33	1.96
10325558--10325787	44	5.2	44	75	6	203	26	20	19	33	1.96
10325208--10325787	88	6.6	88	72	5	388	27	19	19	33	1.96
10325814--10326043	117	2.0	117	95	0	415	22	26	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10328455--10328488	6	5.7	6	89	0	50	8	0	14	76	1.01
10328455--10328489	12	2.8	12	95	4	61	8	0	14	77	0.99
10328453--10328492	18	2.3	17	87	8	62	7	0	12	80	0.91
10354433--10354484	24	2.2	24	82	6	61	65	3	1	28	1.21
10355688--10355713	7	3.7	7	100	0	52	30	0	26	42	1.56
10357276--10357362	29	3.0	30	79	5	106	32	6	14	45	1.72
10361893--10361926	15	2.3	15	100	0	68	20	20	20	38	1.94
10362796--10362833	10	3.8	10	85	0	58	0	7	2	89	0.57
10362798--10362833	18	1.9	19	94	5	65	0	8	2	88	0.59
10362796--10362833	20	1.9	20	94	0	67	0	7	2	89	0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75