genome.fa.s11.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  71  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23171564--23171595	12	2.6	13	85	14	50	40	25	0	34	1.56
23171769--23171794	11	2.4	11	100	0	52	0	42	7	50	1.31
23174794--23174902	42	2.6	42	75	8	114	43	15	22	18	1.88
23177165--23177247	27	3.1	26	75	16	80	18	16	26	38	1.92
23181596--23181659	17	3.8	17	87	4	85	32	12	10	43	1.77
23181756--23181803	17	2.8	18	81	9	64	31	12	10	45	1.76
23181500--23181929	144	3.0	141	88	4	634	39	6	8	45	1.61
23181874--23181925	19	2.8	20	86	11	67	28	9	11	50	1.70
23181779--23182016	125	1.9	127	95	1	435	37	5	8	48	1.55
23185227--23185269	18	2.4	18	88	0	68	51	0	2	46	1.13
23185407--23185440	10	3.5	10	84	8	52	70	5	0	23	1.09
23186678--23186912	86	3.0	75	85	8	265	30	20	16	32	1.95
23186753--23186914	86	1.9	86	92	0	270	30	20	16	31	1.95
23186781--23186962	40	4.3	43	70	15	137	26	21	18	32	1.96
23187021--23187087	35	1.9	35	81	3	82	41	13	13	31	1.83
23187072--23187139	34	2.0	35	82	2	84	47	10	11	30	1.74
23188576--23188636	21	2.9	22	75	18	67	45	3	1	49	1.28
23195162--23195259	45	2.2	45	100	0	196	38	20	18	22	1.93
23208902--23208971	31	2.3	31	89	0	113	40	12	14	32	1.84
23210314--23210346	14	2.4	14	90	10	50	63	0	0	36	0.95
23214319--23214343	2	12.5	2	100	0	50	48	0	0	52	1.00
23231490--23231614	43	2.9	43	83	4	128	30	17	20	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23232228--23232881	330	2.0	330	100	0	1308	39	16	10	32	1.83
23257415--23257999	282	2.0	282	81	6	683	38	9	15	36	1.80
23258586--23258628	9	4.6	9	80	11	50	32	0	0	67	0.91
23258591--23258628	20	1.9	20	88	0	58	34	0	0	65	0.93
23259366--23259396	15	2.0	16	93	6	55	58	0	6	35	1.24
23261469--23261575	45	2.4	45	76	9	119	22	18	17	41	1.91
23271794--23271845	26	2.0	26	88	7	79	38	13	7	40	1.73
23286294--23286414	61	2.0	60	98	1	233	21	20	13	44	1.85
23289853--23289893	19	2.0	21	86	9	59	14	48	0	36	1.44
23289954--23290042	29	2.8	31	73	8	74	24	19	2	53	1.56
23290138--23290162	4	6.2	4	100	0	50	0	24	0	76	0.80
23290558--23290681	60	2.1	60	85	7	164	46	4	24	24	1.71
23296647--23296704	18	3.1	19	69	20	50	48	6	3	41	1.47
23298626--23298685	19	3.2	19	79	11	54	66	1	1	30	1.11
23298652--23298688	16	2.2	17	95	4	67	67	0	0	32	0.91
23303905--23303960	27	2.0	29	83	13	73	55	1	0	42	1.10
23303910--23303974	27	2.4	27	75	10	62	55	1	1	41	1.18
23306709--23306769	13	4.2	14	78	14	70	32	6	0	60	1.22
23306709--23306799	13	6.5	13	70	17	58	34	4	0	61	1.16
23308863--23308899	19	2.0	18	89	5	56	70	2	2	24	1.14
23308864--23308905	19	2.2	19	83	8	50	73	2	2	21	1.06
23311126--23311352	75	3.0	75	88	1	339	29	27	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23311324--23311380	28	2.0	28	100	0	114	21	26	21	31	1.98
23311378--23311529	33	4.5	32	72	20	98	30	27	21	20	1.98
23311249--23311451	103	2.0	103	98	0	388	26	26	21	26	1.99
23311352--23311506	75	2.1	75	92	0	256	29	27	20	23	1.98
23311174--23311506	178	1.9	178	89	2	526	29	27	19	23	1.98
23311249--23311531	103	2.7	99	86	10	290	28	27	20	23	1.99
23311685--23311727	8	4.9	8	81	18	50	79	2	0	18	0.85
23311685--23311728	17	2.4	19	85	11	65	77	2	0	20	0.88
23311724--23311838	29	3.9	29	78	7	106	37	17	3	41	1.66
23311779--23311849	29	2.4	29	80	2	88	40	18	1	39	1.59
23312225--23312271	18	2.6	18	83	12	53	82	0	8	8	0.83
23312289--23312360	21	3.3	21	92	5	108	26	50	18	5	1.68
23312479--23312532	23	2.3	23	96	0	99	24	46	25	3	1.69
23312567--23312612	11	3.8	12	80	8	58	80	0	19	0	0.71
23312923--23312963	17	2.3	18	87	8	57	58	4	4	31	1.40
23313130--23313288	17	9.0	17	75	17	146	30	13	12	43	1.81
23313176--23313216	19	2.1	18	90	4	55	46	9	9	34	1.70
23313176--23313216	20	2.0	20	90	9	66	46	9	9	34	1.70
23313130--23313288	35	4.5	35	80	11	164	30	13	12	43	1.81
23323184--23323642	229	2.0	229	97	0	866	23	21	22	31	1.98
23324375--23324472	8	11.8	8	73	13	56	80	8	8	3	0.99
23324375--23324473	9	10.7	9	73	14	51	80	8	8	3	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23324375--23324456	23	3.2	25	78	11	71	80	8	7	3	1.01
23324428--23324472	15	2.9	16	93	6	83	84	6	8	0	0.78
23324428--23324481	8	6.6	8	76	4	54	85	5	9	0	0.75
23324375--23324481	16	6.4	17	75	12	80	81	7	8	2	0.97
23325719--23326530	79	10.2	80	88	5	998	28	16	19	35	1.94
23326739--23326852	29	3.9	29	80	12	133	35	19	5	40	1.74
23326738--23326863	59	2.1	60	85	7	168	36	19	4	38	1.73
23326754--23326884	59	2.2	58	78	9	140	33	22	5	38	1.77
23327306--23327377	21	3.3	21	92	5	108	25	48	19	6	1.73
23327560--23327609	10	4.8	10	80	9	64	82	0	18	0	0.68
23327565--23327615	7	7.7	7	74	12	54	82	0	17	0	0.67
23327563--23327604	22	1.9	22	90	0	66	80	0	19	0	0.70
23327918--23327958	17	2.3	18	87	8	57	58	4	4	31	1.40
23328119--23328281	17	9.3	18	71	17	128	32	12	12	42	1.80
23328153--23328247	37	2.6	36	80	9	104	36	12	10	40	1.78
23337505--23337552	25	1.9	25	83	8	62	31	2	0	66	1.03
23338632--23338692	32	1.9	32	83	9	81	19	1	18	60	1.44
23347127--23347324	99	2.0	98	96	1	360	45	13	12	28	1.80
23349086--23349126	21	2.0	21	95	0	73	19	39	14	26	1.90
23349049--23349192	78	1.8	78	95	0	261	19	41	15	23	1.89
23350707--23350755	24	2.1	24	84	3	64	38	16	14	30	1.88
23352421--23352488	11	5.6	11	72	17	55	33	2	1	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23352414--23352495	38	2.1	39	95	2	148	30	2	1	65	1.13
23352525--23352554	15	1.9	16	93	6	53	0	30	60	10	1.30
23352978--23353026	19	2.6	17	79	17	53	42	2	4	51	1.32
23356482--23356534	25	2.1	25	85	0	70	43	1	1	52	1.23
23364715--23364834	33	3.7	33	87	6	183	42	14	25	17	1.87
23371529--23371695	39	4.3	39	98	0	316	37	14	34	13	1.86
23374960--23374994	3	11.7	3	100	0	70	65	0	0	34	0.93
23376012--23376055	16	2.7	16	89	3	61	0	20	11	68	1.20
23376090--23376122	16	2.0	17	88	5	50	48	0	3	48	1.17
23378714--23378844	50	2.8	47	85	13	189	32	22	13	32	1.93
23378753--23378856	44	2.4	44	93	1	174	32	23	13	30	1.93
23382563--23382672	24	4.7	24	81	9	102	56	10	2	30	1.46
23382547--23382604	24	2.6	22	75	24	59	56	5	5	32	1.43
23384907--23384950	17	2.6	17	89	7	63	31	4	0	63	1.14
23389158--23389238	33	2.5	33	91	0	135	40	17	22	19	1.91
23389637--23389698	29	2.1	31	82	11	76	29	8	1	61	1.34
23390766--23390819	20	2.6	21	80	11	67	37	0	0	62	0.95
23393098--23393214	62	1.9	61	87	5	175	52	3	3	40	1.35
23393193--23393241	20	2.7	18	77	22	57	51	2	2	44	1.24
23395458--23395527	31	2.3	31	97	0	131	35	10	15	38	1.81
23398129--23398154	12	2.2	12	100	0	52	30	15	30	23	1.95
23400070--23400108	19	2.0	21	90	10	64	10	12	0	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23418299--23418639	44	7.8	44	72	9	180	29	19	22	28	1.98
23418305--23418814	87	5.7	88	73	11	360	30	19	21	28	1.97
23418296--23418547	131	1.9	130	80	8	289	26	21	23	28	1.99
23418302--23418825	175	3.0	172	81	6	514	30	19	21	28	1.97
23419706--23419744	19	2.0	21	90	10	64	10	10	0	79	0.94
23421942--23421981	15	2.7	16	81	14	50	17	12	0	70	1.18
23430573--23430712	46	3.1	45	94	3	244	32	15	22	28	1.95
23431621--23431654	17	2.0	17	88	11	52	52	0	0	47	1.00
23431694--23431735	18	2.4	18	92	4	68	35	2	0	61	1.09
23432809--23432841	15	2.3	15	90	10	52	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75