genome.fa.s11.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  43  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13745792--13745855	25	2.6	25	78	4	69	40	15	18	25	1.90
13753926--13753968	21	2.0	21	86	8	61	62	0	4	32	1.15
13762988--13763017	6	5.0	6	95	0	51	30	0	0	70	0.88
13767060--13767092	17	1.9	17	93	0	57	69	0	3	27	1.03
13790507--13790573	20	3.2	21	72	10	57	44	10	13	31	1.77
13790910--13790941	9	3.8	9	84	16	50	43	0	0	56	0.99
13793878--13793923	8	5.5	8	80	10	56	17	30	36	15	1.91
13793878--13793923	17	2.7	17	86	0	65	17	30	36	15	1.91
13794319--13794370	25	2.1	25	100	0	104	32	23	7	36	1.83
13794376--13794426	15	3.4	15	97	0	93	41	9	0	49	1.36
13794616--13794657	17	2.5	17	100	0	84	33	9	0	57	1.31
13797533--13797593	9	6.6	9	85	7	86	22	8	31	37	1.84
13797536--13797595	20	3.1	20	85	9	88	20	8	31	40	1.82
13799229--13799268	18	2.2	18	86	8	55	60	2	0	37	1.11
13799239--13799289	17	2.8	19	82	11	54	60	0	0	39	0.97
13800178--13800216	21	1.9	20	89	5	60	53	2	0	43	1.14
13804987--13805020	15	2.2	16	90	10	54	23	0	8	67	1.18
13807501--13807562	30	2.1	30	96	0	115	75	3	11	9	1.14
13808380--13808425	20	2.2	21	88	7	76	47	17	0	34	1.48
13808380--13808426	11	4.5	11	84	12	64	46	17	0	36	1.48
13808407--13808462	27	2.1	27	89	0	85	53	7	5	33	1.51
13808386--13808459	11	7.0	11	75	14	50	50	10	2	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13809086--13809120	17	2.1	16	89	5	52	60	5	0	34	1.21
13811700--13811756	20	2.8	20	83	0	69	10	31	21	36	1.87
13813701--13813764	24	2.6	25	81	16	80	21	20	21	35	1.96
13813701--13813789	25	3.7	23	79	13	81	25	20	21	32	1.97
13813923--13813959	9	4.1	9	92	0	65	45	13	10	29	1.77
13814883--13816108	612	2.0	612	100	0	2452	30	17	18	33	1.94
13816541--13816702	40	4.1	40	100	0	324	22	4	22	50	1.68
13822770--13822895	63	2.0	63	96	0	234	47	15	16	19	1.83
13823813--13823874	26	2.4	26	94	2	108	14	24	14	46	1.82
13825668--13825747	25	3.2	25	76	0	79	32	17	26	23	1.97
13837787--13837921	40	3.4	40	76	5	121	37	22	24	16	1.94
13837960--13838139	41	4.4	41	95	0	306	12	22	27	37	1.91
13839612--13839649	15	2.5	15	86	0	58	21	0	42	36	1.53
13850493--13850537	21	2.1	21	87	0	63	37	11	42	8	1.72
13850548--13850605	21	2.8	21	94	0	107	37	12	46	3	1.58
13850953--13851356	43	9.3	43	74	7	276	25	20	28	26	1.99
13850954--13851188	91	2.6	91	85	4	284	24	17	28	29	1.98
13850935--13851356	86	4.8	86	78	6	330	25	20	28	26	1.99
13851045--13851356	129	2.4	130	81	8	343	24	19	29	26	1.98
13851068--13851403	43	7.8	43	77	5	250	24	21	28	25	1.99
13851505--13851547	22	2.0	22	90	0	68	44	27	18	9	1.80
13856558--13856600	22	2.0	22	90	0	68	48	16	23	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13857297--13857583	143	2.0	144	99	0	567	43	6	11	37	1.69
13858318--13858363	22	2.1	21	84	4	56	23	13	0	63	1.30
13858315--13858363	21	2.3	20	76	10	53	28	12	0	59	1.34
13863860--13863887	4	7.0	4	100	0	56	0	25	0	75	0.81
13863937--13863978	15	2.7	15	88	3	57	4	19	2	73	1.12
13863987--13864058	5	14.4	5	75	20	62	56	4	0	38	1.18
13863988--13864030	19	2.3	19	92	8	70	58	0	0	41	0.98
13863994--13864059	24	2.7	25	81	9	73	59	4	0	36	1.18
13867840--13867886	20	2.3	20	82	7	51	21	2	6	70	1.20
13868102--13868198	48	2.0	48	100	0	194	38	10	8	43	1.69
13871069--13871097	7	4.1	7	100	0	58	27	17	27	27	1.97
13875672--13875830	29	5.5	29	80	3	176	35	24	15	24	1.94
13879987--13880054	30	2.2	31	78	2	75	47	7	19	26	1.75
13886280--13886490	113	1.9	113	97	0	404	32	18	11	37	1.87
13886714--13886750	12	3.1	12	88	0	56	10	0	21	67	1.21
13891842--13891886	23	2.0	23	82	8	56	37	20	8	33	1.83
13895586--13895618	10	3.4	10	87	4	50	54	27	6	12	1.60
13901438--13901475	5	7.8	5	88	5	51	39	21	23	15	1.92
13903734--13903775	2	21.5	2	95	4	77	50	0	50	0	1.00
13905938--13905978	20	2.0	21	95	4	75	29	34	9	26	1.88
13914806--13915621	125	6.4	125	88	4	1155	31	21	23	24	1.98
13914806--13915618	257	3.2	255	88	4	1224	31	21	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13914806--13915616	382	2.1	382	91	1	1316	31	21	23	24	1.98
13915631--13916132	44	11.6	43	70	14	259	27	20	24	27	1.99
13915615--13916170	217	2.6	217	94	0	961	27	20	24	27	1.99
13915887--13916092	84	2.4	86	79	13	212	27	20	24	27	1.99
13930291--13930337	22	2.1	22	100	0	94	23	17	27	31	1.96
13930498--13930555	30	1.9	30	89	0	89	25	5	15	53	1.63
13930683--13930713	11	2.8	11	90	0	53	67	0	0	32	0.91
13930923--13930987	32	2.1	31	94	2	112	66	10	7	15	1.44
13941049--13941249	98	2.1	97	96	1	375	41	20	12	24	1.88
13942450--13943058	305	2.0	306	94	0	1069	35	18	11	33	1.88
13950225--13950260	10	3.6	10	92	0	63	52	0	0	47	1.00
13950224--13950278	20	2.9	19	81	7	67	50	1	1	45	1.22
13950226--13950260	5	7.0	5	86	0	52	54	0	0	45	0.99
13956580--13956605	3	8.7	3	100	0	52	34	0	30	34	1.58
13958280--13958418	43	3.3	43	67	15	117	31	20	16	31	1.95
13958323--13958459	41	3.3	40	68	15	116	34	20	16	28	1.95
13958253--13958482	84	2.7	84	93	0	388	31	23	15	30	1.95
13958270--13958714	44	10.4	45	69	12	238	29	23	17	28	1.97
13958723--13959318	128	4.7	128	92	0	958	24	26	19	29	1.98
13960561--13960598	14	2.6	15	83	8	51	10	15	0	73	1.09
13961452--13961512	32	1.9	32	86	6	88	13	8	9	68	1.38
13966237--13966262	3	8.7	3	100	0	52	34	0	30	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13968818--13969243	211	2.0	212	88	2	624	41	15	8	34	1.79
13973481--13973697	51	4.6	44	77	15	229	29	23	16	31	1.96
13973483--13973697	95	2.3	95	93	1	310	28	23	16	31	1.96
13989021--13989247	50	4.5	49	76	12	163	23	27	20	29	1.99
13998516--13998549	17	2.1	17	88	5	52	8	2	14	73	1.19
14003006--14003079	35	2.1	35	97	0	139	27	21	18	32	1.97
14013905--14013982	32	2.5	31	89	4	113	42	1	19	37	1.59
14015741--14016170	212	2.0	211	93	1	736	39	15	10	34	1.81
14017861--14017887	13	2.1	13	100	0	54	14	0	0	85	0.61
14022015--14022064	25	2.2	22	83	16	66	40	18	30	12	1.86
14022949--14022999	6	8.7	6	97	2	95	70	13	0	15	1.17
14022946--14023067	29	4.1	29	76	8	95	69	10	6	13	1.35
14024675--14025003	87	3.8	87	92	0	532	30	22	22	24	1.99
14025122--14025279	84	1.8	85	85	6	212	31	19	22	26	1.98
14025117--14025325	44	4.9	42	72	12	149	32	20	22	25	1.98
14025329--14025424	44	2.2	44	86	3	131	31	18	22	27	1.97
14025304--14025759	142	3.2	142	91	0	723	33	18	21	26	1.96
14025824--14026250	50	8.5	51	71	4	305	32	22	20	24	1.97
14025820--14026249	100	4.3	100	88	0	608	32	22	20	24	1.98
14027273--14027299	13	2.1	13	100	0	54	14	0	0	85	0.61
14048982--14049054	37	1.9	37	84	13	96	31	21	2	43	1.67
14049130--14049223	45	2.1	45	87	0	134	30	23	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14061625--14061676	27	1.9	27	96	0	95	23	19	23	34	1.96
14065712--14065773	28	2.2	28	97	0	115	29	24	20	25	1.99
14078753--14079169	42	9.9	42	90	2	568	34	20	21	23	1.97
14095115--14095139	10	2.5	10	100	0	50	32	8	12	48	1.69
14095141--14095376	51	4.6	51	99	0	463	41	15	20	22	1.90
14095793--14096399	198	3.1	198	93	0	984	33	20	17	29	1.95
14096868--14096915	18	2.7	18	87	6	71	14	4	2	79	0.98
14096952--14096978	14	1.9	14	100	0	54	44	7	0	48	1.31
14102434--14102467	17	2.0	17	94	0	59	58	14	11	14	1.63
14107662--14107708	21	2.2	21	81	7	60	14	17	29	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75