genome.fa.s11.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  58  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18617351--18617405	15	3.7	15	80	9	60	54	1	0	43	1.10
18621251--18621389	3	46.3	3	100	0	278	33	0	0	66	0.92
18621388--18621458	3	23.7	3	91	0	115	35	0	29	35	1.58
18623772--18623840	12	6.0	11	83	6	66	73	5	2	17	1.15
18623803--18623840	11	3.4	11	92	3	58	81	2	5	10	0.94
18625271--18625303	9	3.8	9	88	4	50	66	3	9	21	1.33
18625409--18625461	19	2.5	22	71	22	60	69	1	7	20	1.22
18626378--18626584	94	2.2	94	80	3	220	20	28	26	24	1.99
18632026--18632064	12	3.3	11	80	19	51	76	5	0	17	0.96
18639837--18640032	100	2.0	100	90	0	311	33	26	12	27	1.93
18645569--18645767	100	2.0	100	90	2	310	36	26	9	27	1.88
18650167--18650196	2	15.0	2	92	0	51	46	0	3	50	1.18
18655230--18655284	9	6.1	9	91	0	92	30	9	12	47	1.73
18656563--18656631	25	2.7	26	82	8	79	24	20	20	34	1.96
18657697--18657726	10	3.0	10	95	0	51	50	3	0	46	1.18
18658981--18659086	51	2.1	51	80	7	117	39	1	16	42	1.59
18667834--18667938	34	3.1	32	76	14	104	31	7	5	55	1.52
18667841--18667938	32	3.0	33	77	12	103	32	8	5	54	1.52
18667841--18667948	36	3.1	35	78	10	107	30	9	4	55	1.52
18669776--18669815	19	2.0	20	85	4	55	27	17	7	47	1.74
18673788--18674520	132	5.6	132	89	3	1036	27	20	25	26	1.99
18673987--18674435	44	10.2	44	68	12	145	26	21	24	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18673934--18674404	44	10.7	42	66	14	130	26	21	25	26	2.00
18673788--18674520	396	1.9	396	91	2	1204	27	20	25	26	1.99
18679114--18679163	17	2.9	18	73	8	50	66	4	2	28	1.21
18685919--18685984	20	3.2	20	71	19	55	25	3	3	68	1.19
18685902--18685948	18	2.6	18	80	16	60	25	0	6	68	1.13
18723628--18723680	13	4.2	13	72	13	56	33	1	13	50	1.52
18723641--18723765	24	4.9	25	73	11	119	27	2	11	59	1.44
18724949--18725112	72	2.3	72	87	4	224	25	6	12	56	1.59
18728618--18728654	9	4.1	9	85	0	56	45	10	10	32	1.74
18730841--18730898	28	2.1	27	87	9	82	46	10	8	34	1.69
18731207--18731248	16	2.6	16	85	7	50	66	4	7	21	1.35
18731648--18731676	11	2.6	11	100	0	58	24	24	0	51	1.48
18744801--18744825	13	1.9	13	100	0	50	56	12	16	16	1.68
18747185--18747222	19	2.0	19	100	0	76	63	10	10	15	1.52
18750030--18750153	42	3.0	42	80	2	124	29	42	6	20	1.77
18753930--18754098	91	1.9	91	98	0	329	25	21	18	33	1.97
18760753--18760804	17	3.2	17	84	15	67	21	0	1	76	0.87
18760778--18760806	7	4.1	7	100	0	58	27	0	0	72	0.85
18765738--18765773	15	2.4	15	95	0	63	86	5	2	5	0.79
18765737--18765786	14	3.6	14	86	7	66	82	6	6	6	0.97
18765731--18765787	15	3.9	14	77	13	53	82	5	7	5	0.95
18766221--18766273	17	3.1	17	89	8	72	77	1	16	3	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18766224--18766273	23	2.2	22	89	3	73	78	2	16	4	1.00
18767497--18767753	99	2.6	100	81	3	338	28	22	22	25	1.99
18767570--18768498	149	6.2	150	71	6	641	29	22	22	25	1.99
18767739--18768550	199	4.1	197	92	1	1167	29	22	22	25	1.99
18767739--18768550	100	8.2	99	80	4	873	29	22	22	25	1.99
18767497--18768251	348	2.2	348	83	1	888	29	22	22	25	1.99
18770165--18770208	8	5.2	8	80	20	54	13	0	2	84	0.73
18770165--18770215	7	7.4	7	80	10	52	15	0	1	82	0.76
18770174--18770210	15	2.4	16	86	9	58	16	0	2	81	0.81
18778060--18778084	2	12.5	2	100	0	50	48	0	0	52	1.00
18779524--18779586	30	2.1	30	87	0	90	23	36	23	15	1.94
18780106--18780143	14	2.7	15	84	12	53	42	7	15	34	1.76
18785922--18785952	1	31.0	1	100	0	62	0	0	0	100	0.00
18792554--18792620	17	3.8	17	73	11	62	49	16	2	31	1.61
18792551--18792625	37	2.0	37	97	0	141	44	16	5	34	1.70
18792551--18792642	37	2.5	37	89	7	125	45	15	5	33	1.69
18796691--18796807	39	3.0	39	94	1	209	18	1	29	50	1.57
18796788--18796812	13	1.9	13	100	0	50	12	0	48	40	1.40
18803621--18804121	154	3.2	154	88	4	738	52	9	10	27	1.66
18816799--18816850	16	3.2	16	91	0	77	30	0	34	34	1.58
18816831--18816940	45	2.6	43	80	9	129	33	5	29	31	1.80
18817086--18817120	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18817185--18817236	15	3.6	15	80	12	56	53	1	0	44	1.11
18817069--18817300	120	1.9	120	97	0	437	50	5	2	42	1.38
18817114--18817300	61	3.1	61	69	17	190	49	6	2	41	1.42
18833995--18834043	16	3.2	16	85	5	57	44	0	10	44	1.37
18840068--18840094	13	2.1	13	100	0	54	48	0	22	29	1.51
18840771--18840810	16	2.5	16	91	0	62	47	2	7	42	1.45
18840805--18840944	75	1.9	74	93	1	244	41	5	8	45	1.56
18841095--18841150	20	2.9	19	92	5	94	66	5	7	21	1.37
18841240--18841272	16	2.1	16	100	0	66	69	12	0	18	1.18
18843707--18843750	22	2.0	22	90	0	70	25	15	2	56	1.51
18843851--18844104	74	3.4	74	96	1	447	38	5	3	52	1.42
18843897--18844005	18	6.0	18	69	17	73	40	2	2	54	1.29
18844045--18844083	18	2.2	18	90	0	60	46	2	0	51	1.14
18847060--18847097	18	2.1	19	85	5	51	50	5	13	31	1.63
18848014--18848132	49	2.4	48	75	8	116	31	17	24	26	1.97
18855198--18855282	27	3.1	27	84	0	107	35	12	25	25	1.92
18855351--18855410	26	2.3	27	82	11	79	25	11	23	40	1.88
18857490--18857522	17	1.9	18	88	11	52	42	9	0	48	1.35
18861292--18861327	18	2.1	17	89	5	54	55	0	2	41	1.14
18863114--18863162	25	2.0	25	88	7	75	61	0	6	32	1.21
18863115--18863166	23	2.3	22	83	12	61	59	0	5	34	1.21
18864157--18864227	27	2.5	28	75	22	69	42	2	2	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18865236--18865263	2	14.0	2	100	0	56	50	0	0	50	1.00
18876974--18877018	21	2.1	21	83	0	54	62	2	2	33	1.20
18880978--18881003	12	2.2	12	100	0	52	7	38	23	30	1.83
18881578--18881609	14	2.3	14	100	0	64	25	37	6	31	1.81
18883907--18884007	44	2.4	42	77	20	120	36	30	2	29	1.72
18883992--18884047	16	3.5	16	87	0	85	25	30	1	42	1.65
18884392--18884447	17	3.3	17	80	11	62	66	1	1	30	1.12
18884602--18884634	16	2.0	17	88	5	50	21	6	0	72	1.05
18884735--18884825	10	9.4	9	71	12	56	36	3	1	59	1.21
18886891--18887013	33	3.7	33	92	0	201	39	34	9	15	1.80
18890544--18890587	22	2.2	19	88	12	61	50	18	0	31	1.47
18891133--18891201	20	3.5	20	74	7	68	43	15	26	14	1.85
18891106--18891221	60	1.9	60	82	0	142	43	17	25	14	1.87
18903106--18903160	16	3.4	16	68	26	53	45	1	30	21	1.62
18903105--18903179	32	2.3	32	97	0	141	45	2	29	22	1.66
18903122--18903176	16	3.4	16	71	26	53	45	3	30	20	1.68
18903189--18903277	39	2.3	39	98	0	169	38	14	17	29	1.90
18909889--18912365	501	4.9	499	84	4	3021	38	13	17	30	1.88
18911034--18911064	2	15.5	2	100	0	62	51	0	0	48	1.00
18909889--18913663	510	7.4	509	79	7	3734	39	13	17	30	1.87
18912363--18912434	24	3.0	24	97	0	135	50	6	8	34	1.60
18913985--18914049	27	2.4	27	97	0	121	27	23	32	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18914331--18914392	19	3.2	19	86	8	88	29	3	12	54	1.53
18914353--18914527	61	2.7	63	83	16	232	28	0	14	56	1.42
18914332--18914521	21	9.0	21	68	16	108	28	1	14	56	1.45
18914964--18915011	25	1.9	25	95	0	87	41	2	10	45	1.50
18919432--18919486	27	2.0	27	85	0	74	25	32	23	18	1.97
18920213--18920249	3	12.3	3	100	0	74	32	0	0	67	0.91
18923978--18924010	5	6.6	5	86	13	50	0	18	0	81	0.68
18927140--18927226	45	1.9	46	90	2	140	59	5	0	34	1.21
18927193--18927228	19	1.9	19	94	5	65	52	0	0	47	1.00
18927140--18927226	46	1.9	45	90	2	138	59	5	0	34	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75