genome.fa.s11.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  69  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22475592--22476246	88	7.4	88	90	0	1022	27	26	24	20	1.99
22476257--22476422	44	3.8	45	87	3	248	26	19	26	27	1.99
22476804--22476911	44	2.5	44	84	3	137	29	19	18	32	1.96
22476931--22477003	37	2.0	37	91	0	119	23	20	24	31	1.98
22476971--22477079	44	2.5	44	80	5	114	31	22	22	23	1.99
22477548--22477573	12	2.2	12	100	0	52	34	7	15	42	1.75
22477565--22477612	24	2.0	25	87	4	71	39	6	16	37	1.74
22477930--22477968	3	13.0	3	88	0	60	30	2	2	64	1.21
22478104--22478136	17	1.9	17	93	0	57	36	12	0	51	1.39
22481671--22481724	26	2.1	26	100	0	108	44	14	3	37	1.63
22483236--22483260	2	12.5	2	100	0	50	48	0	0	52	1.00
22484178--22484208	15	2.1	15	93	0	53	9	6	19	64	1.45
22489655--22489708	5	10.8	5	91	0	72	20	22	14	42	1.88
22496686--22496760	34	2.3	32	78	15	82	42	1	2	53	1.23
22504581--22504631	21	2.4	21	90	0	75	29	37	7	25	1.84
22506425--22506501	39	2.0	39	100	0	154	19	20	23	36	1.95
22509846--22509903	19	2.7	22	84	10	68	36	8	17	37	1.80
22513136--22513180	22	2.2	22	84	11	60	42	2	0	55	1.12
22514374--22514532	42	3.7	42	80	7	194	23	25	16	33	1.96
22514404--22514602	45	4.7	43	73	14	166	21	26	17	34	1.96
22514453--22514603	80	1.9	80	94	0	266	21	25	18	33	1.96
22517270--22517364	31	3.1	30	74	17	88	41	3	4	51	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22530675--22530748	25	3.0	25	84	7	96	28	21	25	24	1.99
22530680--22530763	25	3.4	24	79	15	82	29	23	25	21	1.99
22531806--22531845	14	2.9	14	84	0	53	32	7	17	42	1.77
22531814--22531880	34	1.9	35	90	3	109	31	8	13	46	1.74
22531829--22531868	20	2.0	20	90	0	62	27	10	12	50	1.72
22531808--22531884	14	5.0	15	71	20	52	32	9	15	42	1.78
22534995--22535242	43	5.8	43	89	0	336	25	30	18	25	1.98
22536514--22536761	43	5.8	43	89	0	336	25	30	18	25	1.98
22537936--22537984	22	2.2	22	100	0	98	40	12	12	34	1.80
22539204--22539269	8	8.4	8	88	3	71	27	3	0	69	1.03
22539212--22539273	8	7.8	8	92	0	97	27	1	0	70	0.96
22539200--22539278	24	3.4	24	82	3	99	26	2	1	69	1.09
22540855--22541002	57	2.5	59	85	9	194	29	21	26	22	1.99
22542841--22543039	107	1.9	108	88	5	305	24	11	12	51	1.72
22543089--22543259	85	2.0	88	91	3	285	25	10	12	51	1.71
22543170--22543569	147	2.7	147	89	4	583	25	14	14	46	1.82
22543478--22543669	106	1.8	106	89	2	305	23	11	12	52	1.72
22544047--22544103	21	2.7	21	76	13	55	35	38	0	26	1.57
22544083--22544113	15	2.1	15	93	0	53	35	45	0	19	1.51
22544128--22544176	14	3.4	14	80	5	62	38	34	0	26	1.57
22544413--22544443	15	2.1	15	93	0	53	35	45	0	19	1.51
22544697--22545115	114	3.7	113	92	1	669	26	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22544697--22545115	227	1.8	227	90	1	678	26	27	22	22	1.99
22547985--22548045	29	2.1	31	84	9	83	31	14	8	45	1.74
22554683--22554733	23	2.2	24	85	3	68	31	3	5	58	1.40
22555550--22555890	170	2.0	171	99	0	675	35	8	6	49	1.60
22556719--22556842	63	2.0	63	98	0	239	33	11	1	53	1.46
22559896--22559961	30	2.3	30	84	5	82	51	9	9	30	1.64
22564739--22564800	28	2.2	28	80	5	72	61	4	0	33	1.17
22572841--22573024	93	2.0	94	98	1	361	22	26	25	26	2.00
22583721--22583753	11	3.0	11	100	0	66	63	27	9	0	1.24
22591300--22591345	19	2.3	20	85	3	58	28	4	4	63	1.33
22596814--22596840	7	3.9	7	100	0	54	70	0	0	29	0.88
22600001--22600325	41	7.9	41	81	2	305	24	19	26	28	1.99
22601228--22601254	3	9.0	3	100	0	54	33	0	0	66	0.92
22603783--22603842	18	3.4	18	64	13	52	43	6	10	40	1.64
22604041--22604354	43	7.3	43	84	0	412	22	15	30	30	1.95
22609965--22610039	38	2.0	38	89	0	114	54	6	10	28	1.60
22610243--22610306	30	2.2	30	83	8	87	25	10	17	46	1.80
22610244--22610306	29	2.2	29	86	11	85	25	11	17	46	1.81
22610608--22610863	126	2.1	123	84	5	327	29	15	21	33	1.95
22613991--22614050	27	2.2	27	96	0	111	43	11	6	38	1.68
22614228--22614361	23	5.6	23	73	13	110	27	1	25	45	1.62
22614244--22614306	18	3.2	18	82	11	54	26	0	28	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22614267--22614605	28	12.0	28	79	11	320	28	1	23	46	1.59
22614267--22614605	59	6.0	59	83	9	383	28	1	23	46	1.59
22617521--22617568	22	2.1	23	84	3	62	56	2	2	39	1.23
22617611--22617652	22	1.9	22	90	0	66	33	0	33	33	1.58
22617624--22617682	30	2.0	30	86	6	84	33	1	33	30	1.68
22617654--22617730	22	3.5	22	91	5	113	38	1	27	32	1.65
22617915--22617969	28	1.9	29	85	10	78	40	21	12	25	1.89
22620784--22620809	4	6.5	4	100	0	52	23	0	0	76	0.78
22629284--22629342	26	2.3	26	82	5	66	50	1	1	45	1.21
22631204--22631240	15	2.4	16	86	13	60	78	0	0	21	0.75
22632645--22632684	20	2.0	20	90	0	62	50	12	10	27	1.72
22632633--22632699	34	1.9	35	87	3	100	46	11	8	32	1.72
22638464--22638529	27	2.3	29	84	10	82	63	0	1	34	1.04
22638496--22638534	20	2.0	20	89	0	60	61	0	2	35	1.10
22651609--22652880	640	2.0	640	100	0	2544	40	12	15	31	1.84
22654258--22654285	3	9.3	3	100	0	56	0	32	0	67	0.91
22663660--22663712	22	2.5	22	78	12	65	7	7	22	62	1.47
22674760--22674802	9	4.8	9	79	0	50	39	18	32	9	1.83
22674762--22674806	12	4.0	12	77	16	51	37	20	33	8	1.83
22682759--22682791	17	1.9	17	93	0	57	39	36	9	15	1.79
22685780--22685834	22	2.4	23	90	3	85	50	1	1	45	1.22
22685808--22685864	16	3.6	16	92	0	96	45	3	5	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22685917--22685990	16	4.1	18	70	16	55	41	4	5	48	1.45
22686862--22686921	22	2.7	22	86	2	75	50	1	1	46	1.21
22686897--22686936	16	2.5	16	91	0	62	47	2	7	42	1.45
22687009--22687041	9	3.7	9	100	0	66	36	0	9	54	1.32
22690320--22690357	11	3.3	12	89	7	53	36	5	0	57	1.21
22690690--22690717	9	3.1	9	100	0	56	57	10	0	32	1.33
22690790--22690831	16	2.6	16	92	0	66	42	7	2	47	1.43
22690805--22690864	22	2.7	22	84	0	75	46	1	1	50	1.21
22692012--22692075	30	2.1	30	85	5	85	50	7	0	42	1.31
22692038--22692088	25	2.0	27	84	7	70	52	3	0	43	1.19
22693133--22693175	17	2.6	16	81	3	50	37	0	2	60	1.10
22700265--22700303	20	1.9	21	89	5	62	38	17	10	33	1.84
22705650--22705703	18	3.3	16	78	12	56	44	0	1	53	1.11
22711465--22711535	19	3.8	19	83	5	101	49	0	9	40	1.36
22711465--22711542	37	2.1	37	97	0	147	50	0	11	38	1.39
22717171--22717247	34	2.3	34	84	4	102	33	14	14	37	1.86
22717401--22717507	43	2.5	43	92	3	171	33	23	11	31	1.90
22722661--22722729	35	2.0	35	85	5	95	46	0	5	47	1.26
22722677--22722737	24	2.5	23	80	15	61	45	0	4	49	1.23
22724214--22724318	45	2.3	44	88	6	149	21	20	20	38	1.94
22724298--22724346	6	7.8	6	79	6	53	20	22	16	40	1.91
22736047--22736181	69	2.0	69	85	1	182	34	6	12	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22737256--22737300	18	2.5	18	85	7	56	51	2	0	46	1.13
22737277--22737337	29	2.1	28	82	8	70	44	4	0	50	1.23
22737312--22737360	19	2.6	19	80	0	62	42	2	0	55	1.11
22743783--22743833	23	2.2	23	82	0	57	35	19	7	37	1.81
22750919--22750984	10	6.8	10	73	14	50	57	3	4	34	1.34
22766855--22766961	54	2.0	54	85	7	146	29	16	27	26	1.97
22770711--22770765	26	2.1	26	96	0	101	52	20	10	16	1.73
22777114--22777151	19	2.0	20	90	10	62	47	0	0	52	1.00
22777398--22777605	43	4.8	43	84	1	256	27	29	17	24	1.97
22777658--22777700	22	1.9	23	85	4	61	37	0	4	58	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75