genome.fa.s11.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  42  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13408332--13408429	47	2.1	47	98	0	187	35	3	33	27	1.73
13419187--13419221	17	2.1	18	89	10	56	48	5	17	28	1.69
13422837--13422861	7	3.6	7	100	0	50	32	0	16	52	1.44
13430989--13431022	12	2.9	12	86	4	52	32	0	0	67	0.91
13431025--13431071	18	2.7	17	72	18	51	65	10	0	23	1.23
13431024--13431063	18	2.2	18	86	8	55	67	12	0	20	1.22
13433172--13433207	2	18.5	2	94	5	65	52	0	0	47	1.00
13433312--13433348	18	2.1	18	100	0	74	16	35	32	16	1.91
13440963--13441006	22	2.0	22	81	0	52	25	4	0	70	1.06
13445931--13446032	40	2.5	42	87	6	154	29	21	19	29	1.98
13447497--13447521	13	1.9	13	100	0	50	40	8	4	48	1.51
13449095--13449141	21	2.2	22	81	11	62	23	21	31	23	1.98
13449102--13449148	21	2.2	21	88	0	67	21	21	31	25	1.98
13453175--13453367	50	3.8	50	90	0	287	21	29	21	27	1.99
13456306--13456331	13	2.0	13	100	0	52	23	15	7	53	1.67
13461054--13461093	20	2.0	20	90	0	62	50	12	10	27	1.72
13461042--13461108	34	1.9	35	87	3	100	46	11	8	32	1.72
13461077--13461116	14	2.9	14	84	0	53	42	17	7	32	1.77
13461478--13461519	5	8.4	5	100	0	84	40	19	0	40	1.51
13466833--13466857	13	1.9	13	100	0	50	32	4	32	32	1.76
13468595--13468660	11	5.8	12	73	18	52	24	27	3	45	1.68
13468622--13468730	51	2.1	50	80	8	121	30	21	0	47	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13471137--13471304	21	7.6	22	79	14	161	41	33	1	24	1.63
13471137--13471304	43	3.8	41	75	17	151	41	33	1	24	1.63
13471130--13471291	70	2.3	69	84	8	195	41	32	1	24	1.63
13474406--13474972	127	4.5	126	88	1	798	30	21	17	31	1.96
13474406--13474972	252	2.2	252	88	1	850	30	21	17	31	1.96
13486463--13486528	30	2.4	27	71	20	66	16	63	4	15	1.46
13488447--13488479	2	16.5	2	93	0	57	51	3	0	45	1.16
13501108--13501644	113	4.8	111	80	9	586	26	22	24	27	2.00
13501108--13501645	225	2.4	226	82	5	662	26	22	24	26	2.00
13501558--13501730	72	2.4	73	80	8	210	24	23	25	26	2.00
13502062--13502131	16	4.4	16	92	0	86	32	0	32	34	1.58
13502110--13502200	45	2.0	44	85	2	119	32	5	27	34	1.80
13502365--13502399	18	2.0	17	88	5	52	54	0	0	45	0.99
13502596--13502632	18	2.0	19	94	5	67	45	5	0	48	1.25
13508944--13508980	16	2.3	16	95	0	65	18	35	18	27	1.95
13512526--13512600	31	2.4	32	86	2	107	22	1	37	38	1.63
13514943--13515026	44	1.9	44	90	0	132	45	3	9	41	1.54
13514640--13515107	256	1.8	254	82	7	599	47	7	7	36	1.60
13534208--13534247	21	1.9	21	94	0	71	25	17	27	30	1.97
13535740--13535857	58	2.0	58	98	0	227	48	9	8	33	1.66
13536108--13536158	19	2.8	20	72	27	58	76	0	0	23	0.79
13536321--13536607	144	2.0	145	90	2	461	37	10	11	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13537235--13537283	3	17.0	3	91	8	84	30	0	0	69	0.89
13542257--13542286	13	2.3	13	94	0	51	66	23	10	0	1.21
13543221--13543253	12	2.8	12	86	4	50	30	3	0	66	1.06
13549581--13549664	34	2.5	34	73	7	89	34	7	3	54	1.45
13551275--13551300	13	2.0	13	100	0	52	30	7	15	46	1.74
13551331--13551374	19	2.3	20	84	7	56	29	20	9	40	1.83
13553226--13553265	19	2.1	19	86	9	55	15	17	5	62	1.49
13554190--13554233	21	2.1	21	87	8	63	68	0	15	15	1.22
13556947--13557036	46	2.0	45	82	6	110	27	18	27	25	1.98
13558896--13558979	34	2.5	34	71	11	82	33	7	4	54	1.49
13565541--13565663	42	2.9	43	81	6	160	26	14	26	32	1.95
13570906--13570957	18	2.8	19	88	11	81	17	21	25	36	1.94
13573651--13573993	43	7.9	43	72	13	179	27	18	23	30	1.98
13573697--13574094	43	9.3	43	73	12	262	25	19	26	28	1.99
13573650--13573836	86	2.2	86	83	5	227	25	18	25	30	1.98
13573940--13574094	42	3.7	40	74	12	143	23	21	27	27	1.99
13576299--13576383	40	2.1	40	100	0	170	40	14	18	27	1.89
13581562--13581595	17	2.0	17	100	0	68	41	5	11	41	1.66
13587801--13587828	10	2.8	10	100	0	56	10	0	14	75	1.06
13595993--13596056	23	2.8	23	92	0	110	15	31	21	31	1.95
13612308--13612366	29	2.0	29	96	0	109	37	8	0	54	1.31
13613690--13613737	5	9.4	5	84	8	53	20	25	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13613800--13613825	5	5.2	5	100	0	52	19	19	19	42	1.90
13618362--13618451	36	2.5	36	85	7	137	30	23	17	28	1.97
13620861--13620893	16	2.1	16	94	0	57	18	0	27	54	1.44
13629007--13629041	10	3.2	11	88	12	54	17	37	0	45	1.48
13629032--13629138	22	4.9	22	100	0	214	31	23	0	44	1.53
13629139--13629225	29	3.2	29	64	26	73	32	24	0	43	1.54
13629120--13629232	51	2.2	51	95	0	199	30	24	0	45	1.54
13630129--13630153	7	3.6	7	100	0	50	28	0	12	60	1.32
13635269--13635621	126	2.8	126	88	2	530	32	21	15	30	1.95
13635269--13635647	125	3.0	125	87	2	553	32	22	15	30	1.94
13637269--13637330	23	2.5	26	72	22	60	50	1	1	46	1.20
13647382--13647443	23	2.5	26	72	22	60	50	1	1	46	1.20
13660546--13660597	25	2.0	26	85	3	70	36	13	11	38	1.81
13663365--13663417	20	2.6	21	76	11	56	33	0	11	54	1.36
13675520--13675560	19	2.2	19	95	0	73	41	17	4	36	1.71
13676272--13676313	17	2.5	17	96	0	75	50	23	4	21	1.68
13678017--13678056	20	2.0	20	85	0	53	40	2	15	42	1.60
13678096--13678144	22	2.1	24	85	7	66	48	10	14	26	1.75
13680421--13680456	11	3.2	11	88	4	54	16	33	0	50	1.46
13680420--13680468	22	2.2	23	82	10	57	20	32	0	46	1.51
13680436--13680559	51	2.4	51	89	2	187	29	25	0	43	1.60
13680560--13680589	12	2.6	12	94	5	53	43	0	10	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13683254--13683367	25	4.7	25	68	20	98	40	2	14	42	1.59
13683367--13683723	29	12.4	29	91	2	560	47	30	1	21	1.58
13683741--13683824	37	2.3	37	100	0	168	40	13	4	41	1.65
13686523--13686872	124	2.8	125	93	2	607	32	21	16	29	1.95
13697050--13697180	42	3.1	42	79	0	145	38	15	25	19	1.91
13697113--13697191	21	3.8	21	66	6	61	41	16	21	20	1.90
13697050--13697197	42	3.5	41	78	1	134	39	14	25	20	1.91
13697282--13697373	24	3.8	24	86	2	139	22	27	8	41	1.83
13701176--13701201	13	2.0	13	100	0	52	30	0	23	46	1.53
13702358--13702469	43	2.6	43	83	5	129	25	17	25	30	1.98
13707140--13707186	24	2.0	24	91	0	76	48	0	29	21	1.50
13711134--13711172	3	13.0	3	100	0	78	33	0	0	66	0.92
13711139--13711253	12	9.0	12	74	17	58	33	2	0	62	1.15
13711171--13711250	25	3.0	27	71	17	76	35	3	1	60	1.23
13718206--13718269	24	2.7	24	82	0	74	48	1	32	17	1.56
13722268--13722304	9	4.1	9	92	0	65	45	13	10	29	1.77
13722481--13722514	14	2.4	14	95	0	59	41	23	0	35	1.55
13723025--13723050	5	5.2	5	100	0	52	19	19	19	42	1.90
13723488--13723590	51	2.0	51	94	0	179	43	22	19	14	1.87
13727891--13727964	12	6.2	12	73	18	66	79	0	2	17	0.84
13727891--13727963	5	13.8	5	78	18	69	79	0	2	17	0.85
13727893--13727962	34	2.0	37	83	13	94	78	0	2	18	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13727904--13727964	22	2.7	23	87	9	83	80	0	1	18	0.80
13728069--13728142	12	6.2	12	73	18	66	79	0	2	17	0.84
13728069--13728141	5	13.8	5	78	18	69	79	0	2	17	0.85
13728071--13728140	34	2.0	37	83	13	94	78	0	2	18	0.87
13728082--13728142	22	2.7	23	87	9	83	80	0	1	18	0.80
13727850--13728206	178	2.0	179	99	0	707	52	13	11	23	1.72
13732076--13732114	20	2.1	17	86	13	51	35	7	0	56	1.28
13736815--13736874	17	3.6	17	71	24	56	45	1	0	53	1.10
13742766--13742822	25	2.3	25	88	8	89	21	21	19	38	1.93
13744253--13744282	13	2.4	13	94	5	53	53	26	20	0	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75