genome.fa.s11.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  49  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15641421--15641458	19	2.0	19	89	0	58	34	15	26	23	1.95
15641397--15641484	44	2.0	44	86	0	122	35	17	25	22	1.95
15650050--15650091	22	2.0	22	86	9	61	7	11	7	73	1.23
15659977--15660009	14	2.4	14	85	14	50	30	6	6	57	1.47
15669819--15670026	91	2.3	91	89	0	308	46	3	3	46	1.39
15669941--15670001	28	2.2	28	85	5	81	45	0	3	50	1.17
15669859--15670001	44	3.2	43	68	20	112	46	2	3	47	1.34
15672508--15672776	77	3.5	77	100	0	538	38	14	18	27	1.91
15673063--15673095	16	2.0	17	94	5	59	48	0	30	21	1.50
15675169--15675259	45	2.0	44	85	2	119	35	27	5	31	1.80
15675238--15675273	16	2.2	16	95	0	63	30	30	0	38	1.58
15681719--15681773	21	2.6	21	82	0	74	34	9	34	21	1.85
15682188--15682220	17	1.9	17	93	0	57	21	15	6	57	1.59
15686822--15686853	3	10.7	3	100	0	64	31	0	0	68	0.90
15687746--15687776	3	10.7	3	93	6	55	67	0	0	32	0.91
15694782--15695033	51	5.2	50	75	18	216	32	15	24	28	1.95
15694775--15694974	87	2.2	91	89	7	300	31	16	23	29	1.96
15694900--15695033	51	2.6	51	92	1	225	31	14	24	29	1.95
15694782--15695033	138	1.8	137	93	0	407	32	15	24	28	1.95
15699543--15699644	23	4.6	23	75	16	99	41	2	2	52	1.31
15699583--15699644	22	2.8	22	87	7	72	40	0	3	56	1.15
15699583--15699651	23	3.1	22	87	6	77	37	2	2	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15700146--15700186	2	22.0	2	80	14	52	48	0	2	48	1.14
15700146--15700186	13	3.1	14	80	13	52	48	0	2	48	1.14
15700146--15700190	14	3.1	15	84	9	58	48	0	4	46	1.22
15700433--15700475	16	2.7	16	85	0	59	39	6	30	23	1.81
15706292--15706316	2	12.5	2	100	0	50	52	0	0	48	1.00
15708777--15708887	17	6.3	16	73	13	69	73	0	5	20	1.02
15708794--15708857	20	3.4	18	77	16	67	71	0	1	26	0.94
15708778--15708879	26	3.8	26	72	13	82	73	0	4	21	1.02
15708830--15708887	25	2.4	25	91	2	91	75	0	6	17	1.01
15708778--15708897	9	13.4	9	73	12	79	72	0	5	22	1.04
15709080--15709158	9	8.3	9	68	15	52	34	1	1	63	1.11
15709514--15709569	28	2.0	28	100	0	112	25	14	17	42	1.87
15711657--15711683	8	3.4	8	100	0	54	44	0	0	55	0.99
15711876--15712174	148	2.0	149	99	0	591	48	4	12	34	1.62
15712719--15712797	31	2.6	30	82	6	79	36	10	10	43	1.72
15725702--15725739	18	2.2	17	86	13	51	34	0	18	47	1.49
15725965--15726086	23	5.3	23	89	2	192	22	22	26	29	1.99
15726292--15726339	23	2.0	25	88	8	73	41	0	20	37	1.53
15738533--15738571	7	5.6	7	96	0	69	46	2	0	51	1.14
15741746--15741787	18	2.3	18	91	0	66	40	26	9	23	1.85
15743203--15743237	12	2.9	12	95	0	61	31	22	20	25	1.98
15750646--15750670	5	5.0	5	100	0	50	40	0	20	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15751149--15751221	26	2.8	26	89	2	103	15	19	24	41	1.89
15754333--15754366	18	1.9	18	94	5	61	17	32	41	8	1.80
15758563--15758982	27	15.5	27	80	5	352	41	20	17	20	1.90
15758563--15758982	81	5.2	81	79	3	414	41	20	17	20	1.90
15759376--15759467	28	3.3	28	85	7	134	21	22	22	32	1.98
15761966--15762352	27	14.3	27	85	1	461	41	20	18	18	1.90
15766500--15766524	13	1.9	13	100	0	50	32	16	4	48	1.64
15766503--15766544	14	3.1	14	86	3	50	26	21	7	45	1.77
15784989--15785045	16	3.6	16	95	0	87	29	0	36	33	1.58
15801021--15801050	6	4.8	6	95	4	51	70	0	13	16	1.18
15801371--15801396	13	2.0	13	100	0	52	76	7	0	15	0.99
15805621--15805998	125	3.0	124	90	3	571	29	16	21	32	1.95
15808505--15808537	14	2.4	14	94	0	57	36	15	24	24	1.93
15810149--15810191	11	3.8	12	81	6	54	58	0	0	41	0.98
15815760--15815824	28	2.3	28	97	0	121	33	15	27	23	1.95
15825533--15825580	24	2.0	24	91	0	78	31	22	14	31	1.94
15828472--15828540	35	2.0	35	85	5	95	43	11	8	36	1.72
15834245--15834275	9	3.6	9	91	8	55	35	9	22	32	1.87
15835441--15835473	15	2.2	15	100	0	66	18	12	0	69	1.18
15836096--15836130	18	1.9	18	88	0	52	57	5	0	37	1.23
15836416--15836481	33	2.0	33	93	0	114	39	18	4	37	1.71
15836849--15836900	25	2.1	25	92	7	88	25	26	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15839827--15839870	2	22.5	2	90	4	72	50	0	0	50	1.00
15840580--15840679	47	2.1	47	88	1	146	42	14	9	35	1.77
15843926--15844070	47	3.1	47	69	16	131	44	2	4	48	1.35
15843907--15844114	91	2.3	91	90	0	317	46	3	3	46	1.37
15844029--15844089	28	2.2	28	85	5	81	45	0	3	50	1.17
15843947--15844089	44	3.2	43	69	20	121	46	2	3	48	1.31
15844424--15844464	15	2.7	16	82	17	52	48	0	0	51	1.00
15844514--15844546	7	4.7	7	100	0	66	45	0	0	54	0.99
15844745--15844784	16	2.5	16	91	0	62	25	32	2	40	1.69
15845937--15846004	27	2.5	27	97	0	127	33	22	13	30	1.92
15848723--15848787	23	2.8	23	85	0	76	35	4	7	52	1.51
15851820--15851869	24	2.0	25	81	11	59	34	12	22	32	1.90
15852722--15852761	18	2.2	18	100	0	80	7	22	15	55	1.65
15854788--15854831	16	2.8	16	82	6	54	79	4	4	11	1.02
15854788--15854835	21	2.4	20	86	13	64	79	4	4	12	1.02
15856631--15857056	129	3.2	130	83	5	455	27	23	20	29	1.99
15856629--15857187	89	6.4	86	71	16	375	27	23	20	29	1.99
15856629--15857227	44	13.7	42	72	15	321	27	23	20	28	1.99
15857713--15857871	44	3.7	43	74	11	139	27	20	23	28	1.99
15857706--15857861	84	1.8	84	84	9	210	26	22	21	29	1.99
15869627--15869669	19	2.3	19	84	8	52	53	6	9	30	1.59
15870783--15871065	141	2.0	142	93	2	480	45	15	16	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15878838--15879208	67	5.5	67	81	3	415	37	19	19	23	1.94
15878839--15879208	135	2.7	134	85	5	453	37	19	19	23	1.94
15881501--15881568	29	2.3	29	85	5	84	35	17	20	26	1.95
15881717--15882069	180	2.0	180	88	1	528	36	15	16	30	1.90
15895979--15896127	77	1.9	76	86	4	210	46	16	4	33	1.65
15901842--15901961	61	2.0	62	83	5	154	37	15	7	40	1.75
15909065--15909095	16	2.0	16	93	6	55	80	0	0	19	0.71
15909065--15909095	5	6.0	5	92	7	53	80	0	0	19	0.71
15910826--15910858	16	2.0	17	88	5	50	9	9	12	69	1.36
15913180--15913204	13	1.9	13	100	0	50	60	0	0	40	0.97
15914237--15914352	51	2.3	51	86	0	151	47	6	17	29	1.71
15929132--15929172	18	2.3	18	100	0	82	14	26	21	36	1.93
15934523--15934565	22	2.0	22	85	0	59	65	2	2	30	1.18
15937035--15937078	23	1.9	23	81	9	54	36	20	0	43	1.52
15940432--15940476	13	3.4	13	79	14	56	17	15	15	51	1.77
15940496--15940556	6	10.0	6	82	3	68	32	13	18	36	1.89
15942290--15942347	20	2.8	20	78	7	62	72	3	10	13	1.24
15943128--15943210	32	2.6	31	80	3	76	44	3	2	49	1.32
15944086--15944176	45	2.0	44	87	6	130	31	5	27	35	1.80
15963756--15963797	9	4.5	10	77	17	54	7	9	11	71	1.31
15968284--15968325	9	4.6	9	84	3	57	7	7	11	73	1.23
15980007--15980058	25	2.1	25	96	0	95	21	23	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15980073--15980213	41	2.9	49	77	19	138	30	26	21	20	1.98
15980131--15980210	41	2.0	41	100	0	160	32	30	17	20	1.95
15980127--15980223	41	2.4	41	89	0	158	31	28	20	18	1.96
15982567--15982624	26	2.1	26	84	9	71	67	3	0	29	1.07
15984327--15984475	44	3.4	44	86	0	190	27	25	16	30	1.96
15984502--15985081	88	6.7	88	73	11	442	23	26	22	26	2.00
15984502--15984700	43	4.5	44	67	8	118	22	27	21	28	1.99
15984690--15984933	78	3.0	78	81	11	317	25	27	24	22	2.00
15984786--15984928	44	3.2	44	72	3	144	26	25	25	22	2.00
15984602--15984933	166	2.0	166	91	1	540	25	27	23	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75