genome.fa.s11.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  62  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19818344--19818379	16	2.2	16	95	0	63	36	5	33	25	1.79
19818359--19818455	44	2.2	44	87	5	133	29	5	29	35	1.79
19818657--19818720	28	2.4	28	86	5	87	56	0	0	43	0.99
19818542--19818903	120	3.0	120	95	0	656	51	4	1	43	1.29
19822349--19822543	98	2.0	98	91	2	320	37	24	10	27	1.88
19824530--19824892	44	8.2	44	67	9	202	26	24	19	29	1.98
19824534--19824900	132	2.8	132	92	0	592	25	24	19	29	1.99
19840526--19840720	98	2.0	98	94	0	345	36	25	10	27	1.89
19844234--19844281	14	3.4	14	79	2	51	10	29	2	58	1.43
19850042--19850066	2	12.5	2	100	0	50	52	0	0	48	1.00
19850989--19851047	20	3.0	20	92	0	91	47	22	25	5	1.71
19855812--19855868	3	18.3	3	75	13	53	59	5	1	33	1.30
19855813--19855873	14	4.2	14	83	10	70	59	6	3	31	1.39
19856746--19856802	3	18.3	3	75	13	53	59	5	1	33	1.30
19856747--19856807	14	4.2	14	83	10	70	59	6	3	31	1.39
19859440--19859493	28	2.0	28	85	3	74	46	5	1	46	1.37
19861626--19861694	35	2.0	35	94	0	120	28	17	10	43	1.81
19870350--19870375	5	5.2	5	100	0	52	38	19	19	23	1.93
19870324--19870375	26	2.0	26	81	7	61	34	15	26	23	1.94
19871855--19871914	29	2.1	29	100	0	120	23	16	13	46	1.82
19873537--19873632	48	2.0	48	84	9	126	40	2	1	56	1.18
19873637--19873665	6	4.8	6	100	0	58	68	13	0	17	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19873743--19873851	49	2.2	49	91	3	175	39	22	4	33	1.74
19879327--19879419	45	2.1	44	81	4	105	44	8	19	27	1.80
19880948--19880983	15	2.5	14	86	4	54	80	2	2	13	0.93
19892185--19892232	24	2.0	24	91	0	78	31	18	14	35	1.91
19894871--19894983	56	2.0	56	92	0	190	30	20	13	35	1.91
19917037--19917292	127	2.0	128	98	1	496	35	19	7	37	1.80
19921606--19921744	54	2.5	53	81	10	136	27	18	23	30	1.98
19926270--19926320	10	5.4	9	79	13	50	9	3	3	82	0.93
19926246--19926322	24	3.1	23	72	18	66	12	2	5	79	1.01
19928597--19928646	21	2.4	21	96	0	91	34	14	14	38	1.85
19929766--19929804	14	2.8	14	88	11	62	43	0	7	48	1.31
19929766--19929804	9	4.2	9	81	18	53	43	0	7	48	1.31
19933856--19933892	3	12.3	3	100	0	74	64	0	0	35	0.94
19933922--19934002	42	1.9	43	82	7	103	64	4	3	27	1.31
19934867--19934900	13	2.8	13	91	8	54	79	5	8	5	1.05
19936343--19936376	13	2.8	13	91	8	54	79	5	8	5	1.05
19947138--19947179	19	2.2	19	83	8	50	28	21	9	40	1.84
19949024--19949052	14	2.1	14	100	0	58	6	20	0	72	1.07
19951374--19952378	132	7.6	132	90	0	1627	28	18	23	29	1.98
19951374--19952378	396	2.5	395	95	0	1803	28	18	23	29	1.98
19952105--19952326	44	5.0	44	68	10	112	28	19	24	27	1.98
19954032--19954109	26	3.1	26	77	15	83	32	6	7	53	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19954855--19955033	88	2.0	89	95	1	324	32	15	20	31	1.93
19955903--19956040	3	45.3	3	77	12	122	31	3	5	59	1.38
19955917--19956068	75	2.0	76	98	1	297	29	6	10	53	1.60
19963609--19963640	16	2.0	16	100	0	64	31	0	18	50	1.48
19964114--19964153	20	2.0	20	90	0	62	27	10	12	50	1.72
19964099--19964165	34	1.9	35	87	3	100	31	8	11	47	1.71
19967146--19967193	6	8.2	6	95	2	62	43	0	56	0	0.99
19967432--19967457	12	2.2	12	100	0	52	42	23	11	23	1.86
19967979--19968017	21	1.9	21	94	5	71	38	10	2	48	1.51
19970841--19970886	24	2.0	24	91	8	78	32	0	2	65	1.05
19970841--19970886	22	2.0	21	88	12	65	32	0	2	65	1.05
19976469--19976527	21	2.7	21	84	5	73	62	20	10	6	1.49
19978336--19978464	30	4.3	30	82	6	140	37	22	2	37	1.67
19978336--19978505	30	5.8	29	77	9	132	35	22	2	38	1.70
19978334--19978464	59	2.2	60	82	8	160	37	22	2	38	1.67
19979067--19979122	20	2.8	21	81	10	64	66	0	33	0	0.92
19979078--19979120	22	1.9	23	85	4	61	67	0	32	0	0.91
19979211--19979249	17	2.4	17	91	4	62	74	15	10	0	1.07
19979370--19979425	26	2.2	26	87	6	78	21	37	28	12	1.90
19979909--19979956	17	2.8	17	81	12	62	27	14	12	45	1.81
19980015--19980063	17	2.9	16	80	19	64	20	16	12	51	1.76
19980019--19980070	17	3.1	17	84	15	56	23	15	11	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19980015--19980070	19	3.2	18	81	18	66	21	16	10	51	1.74
19980049--19980097	26	1.9	25	95	4	89	28	16	8	46	1.75
19980023--19980109	44	2.0	43	86	8	122	29	13	6	49	1.68
19980071--19980197	18	6.6	18	73	14	85	32	11	8	48	1.69
19980108--19980197	19	4.8	19	81	9	96	32	10	10	47	1.70
19984011--19984057	9	4.9	9	76	23	51	82	12	2	2	0.84
19984010--19984066	21	2.8	20	82	15	64	82	10	5	1	0.90
19984927--19985774	76	11.2	76	86	6	1102	28	15	18	37	1.91
19984923--19985760	153	5.5	153	87	7	1113	28	15	18	37	1.92
19986155--19986295	30	4.8	29	78	6	140	36	24	2	36	1.71
19987004--19987051	24	2.0	25	83	4	62	75	10	8	6	1.20
19987713--19987760	17	2.8	17	81	12	62	27	14	12	45	1.81
19987826--19987875	19	2.8	18	83	16	61	24	14	10	52	1.71
19987838--19988223	17	20.7	19	69	18	108	32	12	9	44	1.76
19987843--19987901	26	2.2	28	88	11	88	28	13	6	50	1.67
19987876--19988243	18	20.2	18	69	15	202	33	12	9	44	1.75
19987851--19987909	26	2.3	25	79	2	73	23	13	6	55	1.62
19987931--19988063	38	3.5	38	85	5	153	33	18	8	40	1.80
19988046--19988223	17	10.3	17	78	7	171	33	9	12	44	1.74
19988044--19988207	70	2.3	71	90	5	271	34	9	12	44	1.73
19988046--19988275	53	4.4	52	79	9	195	33	10	11	44	1.74
19989970--19990061	25	3.7	24	72	8	69	19	25	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19990067--19990114	23	2.1	23	84	0	60	18	27	20	33	1.96
19990328--19990403	26	2.9	25	81	11	82	18	23	19	38	1.93
19990338--19990404	26	2.5	26	85	2	89	19	20	19	40	1.92
19994345--19994406	26	2.4	25	84	5	88	37	12	11	38	1.80
20001163--20001201	19	2.1	19	90	0	60	48	12	12	25	1.77
20002907--20003188	140	2.0	141	99	0	557	39	15	10	34	1.83
20004300--20004440	44	3.0	48	85	11	184	26	24	17	31	1.97
20032940--20032998	31	1.9	31	89	0	91	50	8	18	22	1.73
20037924--20038025	20	5.4	20	70	13	65	32	6	3	56	1.44
20038707--20038768	16	3.7	17	71	18	58	58	1	0	40	1.08
20042175--20042219	19	2.4	18	85	7	72	55	0	15	28	1.41
20050538--20050597	30	2.1	28	87	6	84	23	23	31	21	1.98
20051654--20051759	7	15.0	7	76	2	59	39	0	29	31	1.57
20051680--20051759	7	11.3	7	82	2	61	35	0	33	31	1.58
20053502--20053545	22	2.0	22	100	0	88	59	22	4	13	1.53
20057988--20058030	13	3.4	13	80	6	52	69	4	0	25	1.07
20058777--20058825	20	2.5	19	78	12	55	36	0	8	55	1.30
20058769--20058863	28	3.4	27	74	11	77	35	0	4	60	1.17
20059748--20059787	20	2.0	20	90	0	62	60	0	0	40	0.97
20060505--20060538	17	2.0	17	88	0	50	41	0	0	58	0.98
20060469--20060553	20	4.3	18	74	18	55	38	0	1	60	1.05
20061405--20061549	27	5.4	27	79	6	132	18	30	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20061398--20061549	54	2.8	54	84	2	171	19	30	17	33	1.94
20065432--20065503	24	3.0	24	93	0	117	19	29	5	45	1.73
20065867--20065901	14	2.4	15	95	4	63	22	31	8	37	1.85
20073833--20073883	25	2.0	27	81	14	63	45	21	3	29	1.70
20077520--20077557	18	2.1	18	100	0	76	21	10	34	34	1.87
20081237--20081773	41	13.1	41	99	0	1056	29	9	14	46	1.76
20085606--20085744	46	3.0	46	87	4	199	29	23	10	36	1.88
20087602--20087649	24	2.0	24	92	8	80	31	25	0	43	1.55
20090690--20090727	19	2.0	19	94	0	67	15	18	26	39	1.91
20091045--20091104	11	5.6	10	75	13	57	73	5	21	0	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75