genome.fa.s11.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  21  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5997375--5997492	57	2.1	58	86	1	166	39	15	21	23	1.91
6004843--6004912	35	2.0	35	85	0	95	40	10	15	34	1.81
6013975--6014052	40	2.0	40	82	10	97	33	24	2	39	1.69
6016061--6016202	25	5.7	25	70	12	112	37	22	14	25	1.92
6016054--6016204	50	3.0	50	85	2	205	38	21	14	25	1.92
6018563--6018593	16	1.9	16	93	0	53	38	3	35	22	1.71
6018762--6018803	15	2.7	16	82	14	52	52	2	0	45	1.13
6018771--6018812	15	2.9	15	82	10	52	52	0	0	47	1.00
6037296--6037329	4	8.2	4	87	6	50	73	0	2	23	0.97
6037296--6037331	13	2.8	13	91	4	56	72	0	2	25	0.98
6046900--6047028	64	2.0	64	92	3	215	32	11	29	26	1.91
6047825--6048229	140	2.9	140	99	0	801	24	16	25	33	1.96
6048496--6048719	58	3.9	58	84	3	256	35	8	19	36	1.82
6048782--6049067	69	4.1	69	76	3	236	18	22	24	34	1.96
6058734--6058762	5	5.8	5	100	0	58	58	0	41	0	0.98
6060899--6060930	2	16.0	2	100	0	64	50	50	0	0	1.00
6061992--6062035	2	22.0	2	90	0	70	47	2	2	47	1.27
6064800--6064841	17	2.4	17	84	11	50	71	0	16	11	1.14
6067047--6067095	22	2.4	22	80	19	61	16	12	14	57	1.66
6067645--6067692	23	2.1	23	88	7	71	52	16	2	29	1.56
6068969--6069021	25	2.2	24	86	3	70	33	22	24	18	1.97
6069006--6069158	64	2.4	64	89	0	234	37	22	16	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6078712--6078751	19	2.1	19	100	0	80	22	5	25	47	1.71
6083182--6083220	19	2.1	19	100	0	78	23	5	25	46	1.73
6084826--6084888	24	2.6	24	80	9	74	39	11	15	33	1.83
6085009--6085378	54	6.9	54	82	4	372	39	13	21	25	1.90
6085030--6085376	108	3.2	108	81	2	419	39	13	21	25	1.90
6085033--6085377	161	2.1	162	84	2	460	39	14	21	24	1.91
6102756--6102934	87	2.1	87	94	0	313	26	11	25	36	1.89
6104465--6104696	114	2.0	113	97	0	437	39	14	7	37	1.75
6105326--6105383	17	3.2	17	76	16	55	51	0	24	24	1.48
6105463--6105522	30	2.0	31	86	3	86	40	0	40	20	1.52
6105657--6105697	21	2.0	21	85	9	57	43	0	31	24	1.54
6105735--6105762	9	3.1	9	100	0	56	32	10	10	46	1.73
6105953--6106063	31	3.7	30	78	8	100	33	10	14	41	1.80
6106945--6106994	26	1.9	26	83	0	64	34	6	4	56	1.43
6112067--6112107	13	3.2	13	83	16	50	36	29	14	19	1.92
6124580--6124621	22	1.9	22	85	0	57	57	23	9	9	1.60
6129458--6129545	22	4.2	21	88	10	135	28	1	12	57	1.42
6129457--6129625	19	8.4	19	75	17	121	29	1	14	55	1.47
6129456--6129545	41	2.1	42	89	4	146	28	1	12	57	1.42
6129868--6129909	16	2.7	15	85	7	57	38	2	2	57	1.25
6129991--6130133	72	2.0	72	95	0	259	43	8	13	34	1.75
6132178--6132229	26	2.0	26	100	0	104	34	19	11	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6135223--6135283	27	2.3	27	82	0	77	24	31	21	22	1.98
6135317--6135360	22	2.0	22	82	4	54	63	0	0	36	0.95
6136286--6136311	11	2.4	11	100	0	52	38	15	7	38	1.76
6145833--6145980	73	2.0	73	92	0	242	20	20	14	44	1.86
6159454--6159480	11	2.5	11	100	0	54	25	33	0	40	1.56
6163072--6163222	19	7.8	19	92	2	257	37	10	15	36	1.82
6163073--6163229	59	2.7	59	95	3	277	38	10	14	36	1.80
6177793--6177866	18	3.9	19	80	7	80	64	9	2	22	1.36
6177891--6177934	18	2.4	18	84	0	52	50	2	0	47	1.13
6178069--6178117	17	2.8	18	75	12	57	22	2	6	69	1.21
6187359--6187397	20	2.0	19	85	14	53	28	28	2	41	1.69
6193789--6193913	50	2.4	52	77	5	130	35	14	14	36	1.87
6196355--6196407	21	2.5	21	90	0	79	15	24	39	20	1.91
6197929--6198087	36	4.6	35	68	11	103	28	18	25	28	1.98
6197994--6198087	33	2.8	33	78	4	98	26	20	27	25	1.99
6197858--6198087	70	3.3	70	87	0	318	29	17	23	28	1.97
6198274--6198335	28	2.2	29	85	8	83	41	14	19	24	1.88
6201570--6201601	16	1.9	17	93	6	57	75	3	18	3	1.08
6202512--6202623	25	4.7	24	78	12	108	17	21	19	41	1.91
6207554--6207584	16	1.9	16	93	0	53	9	9	9	70	1.33
6212484--6212520	18	2.1	18	89	0	56	13	16	29	40	1.86
6241505--6241556	20	2.7	20	88	5	72	44	0	7	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6241519--6241558	20	2.0	20	100	0	80	35	0	10	55	1.34
6242258--6242295	19	2.1	19	90	5	60	39	0	5	55	1.23
6242850--6242879	12	2.5	12	94	0	51	53	0	10	36	1.35
6244117--6244284	23	7.3	23	87	2	223	30	23	22	23	1.99
6244117--6244284	69	2.4	69	91	0	273	30	23	22	23	1.99
6248284--6248336	3	18.0	3	84	3	72	32	3	1	62	1.24
6248791--6249101	109	2.9	109	90	1	466	30	16	18	33	1.94
6250060--6250118	25	2.3	26	82	8	68	69	1	0	28	0.98
6260617--6261357	98	7.6	98	98	0	1365	38	24	8	28	1.85
6261557--6261595	19	2.0	21	85	10	55	69	5	10	15	1.34
6261764--6261808	23	2.0	23	91	4	74	48	15	4	31	1.65
6261797--6261889	19	4.8	19	90	5	150	36	15	10	37	1.82
6261797--6261889	40	2.4	38	92	3	150	36	15	10	37	1.82
6272080--6272138	22	2.7	22	84	7	68	33	0	38	27	1.57
6272183--6272244	25	2.5	24	79	7	70	12	0	32	54	1.38
6272183--6272243	12	4.9	12	76	7	50	13	0	32	54	1.39
6272385--6272429	6	7.2	6	83	16	56	77	0	2	20	0.87
6272374--6272434	17	3.7	15	77	16	50	78	3	1	16	0.96
6272380--6272423	17	2.4	19	88	7	65	79	2	2	15	0.93
6272385--6272453	29	2.4	29	76	11	70	73	0	4	21	1.00
6282617--6282648	2	16.0	2	93	0	55	53	0	0	46	1.00
6289806--6289903	51	1.9	51	89	4	153	32	11	20	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6290145--6290182	19	2.0	19	100	0	76	36	15	10	36	1.82
6291139--6291178	1	40.0	1	94	0	71	97	2	0	0	0.17
6295554--6295617	24	2.7	24	77	0	74	35	1	9	53	1.43
6303651--6303826	50	3.6	50	77	4	171	22	22	22	32	1.98
6305523--6307688	884	2.5	881	88	1	3175	37	16	13	31	1.88
6308112--6308230	13	8.5	15	65	13	65	27	16	24	31	1.97
6308103--6308234	28	4.7	28	79	1	131	26	18	24	31	1.97
6308227--6308362	24	5.7	24	75	5	87	33	16	19	30	1.93
6308298--6308379	23	3.5	24	77	9	89	32	15	19	31	1.93
6308352--6308574	58	3.8	58	80	6	218	37	12	17	32	1.87
6308552--6308596	18	2.6	18	89	3	65	35	8	22	33	1.85
6308743--6308785	16	2.8	16	78	3	52	27	23	20	27	1.99
6308792--6308851	15	3.9	16	77	16	65	20	11	33	35	1.88
6310954--6310991	20	1.9	20	88	0	58	57	0	7	34	1.28
6312359--6312400	22	1.9	22	85	0	57	26	2	9	61	1.39
6316390--6316441	16	3.2	16	91	0	77	28	1	36	32	1.69
6316422--6316512	45	2.0	44	82	2	110	32	6	27	32	1.83
6316840--6316964	44	2.8	44	72	17	121	48	2	3	46	1.31
6318029--6318296	77	3.5	77	100	0	536	38	13	19	29	1.90
6321292--6321336	18	2.5	18	100	0	90	20	17	20	42	1.90
6323601--6323804	40	5.1	40	82	0	246	41	25	18	14	1.89
6332617--6332656	19	2.0	20	85	4	55	45	5	7	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6335576--6335667	43	2.1	43	85	0	121	6	18	18	56	1.62
6336244--6336285	22	2.0	22	85	4	59	54	23	4	16	1.61
6338138--6338223	27	3.2	27	78	6	102	22	25	15	37	1.93
6343509--6343676	54	3.1	54	63	13	130	49	20	9	20	1.76
6343475--6343683	106	2.0	106	95	0	373	48	20	10	20	1.79
6350799--6351035	110	2.2	110	100	0	474	41	14	5	38	1.68
6351019--6351072	12	4.2	12	74	21	56	44	9	3	42	1.54
6351603--6351634	15	2.1	15	100	0	64	46	0	6	46	1.27
6355452--6355531	30	2.7	30	82	1	99	38	20	16	25	1.92
6359053--6359151	26	3.8	26	89	0	135	28	14	13	44	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75