genome.fa.s11.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  53  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17004391--17004426	11	3.4	11	84	7	56	22	0	0	77	0.76
17004391--17004423	16	2.1	15	94	5	57	21	0	0	78	0.75
17006739--17006786	22	2.1	23	84	3	62	27	12	16	43	1.84
17012284--17012364	9	9.0	9	68	5	56	35	24	8	30	1.86
17012284--17012377	18	5.4	18	83	8	106	37	23	8	30	1.85
17019068--17019113	22	2.1	22	84	8	58	50	4	2	43	1.34
17023605--17023800	25	8.0	24	71	11	105	33	20	27	18	1.96
17023708--17023850	75	1.9	75	84	2	189	35	18	26	18	1.95
17023702--17023850	25	6.0	25	72	5	104	35	18	26	19	1.95
17023707--17023865	75	2.1	75	81	2	185	34	19	27	18	1.95
17029173--17029315	50	2.7	51	80	10	164	28	18	26	25	1.98
17029564--17029602	12	3.2	12	85	0	51	51	5	23	20	1.67
17033560--17033610	15	2.8	20	69	27	58	37	17	21	23	1.94
17046180--17046408	20	11.5	19	65	10	93	13	28	15	41	1.85
17046177--17046424	40	6.2	40	80	6	243	14	29	15	40	1.88
17046190--17046361	60	2.9	60	71	13	156	13	28	16	41	1.86
17046190--17046472	120	2.4	120	80	4	295	13	30	16	39	1.87
17046189--17046497	40	7.8	40	77	7	139	13	30	16	39	1.87
17048492--17048531	21	1.9	21	84	0	53	32	10	5	52	1.56
17052914--17052984	26	2.8	25	82	6	90	16	23	22	36	1.94
17053051--17053144	24	3.8	25	73	4	84	20	27	19	32	1.96
17052951--17053105	73	2.1	74	82	8	192	21	26	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17059906--17059950	6	7.2	6	87	7	63	82	0	4	13	0.82
17059906--17059950	13	3.5	13	88	11	58	82	0	4	13	0.82
17061081--17061284	44	4.7	44	81	4	216	23	24	22	29	1.99
17075440--17075716	137	2.0	138	97	0	520	35	13	19	32	1.90
17079836--17079901	28	2.3	28	82	10	71	28	7	12	51	1.66
17080072--17080114	22	2.0	22	81	9	52	34	0	4	60	1.17
17081535--17081643	30	3.7	30	83	9	125	31	25	2	40	1.70
17081528--17081695	59	2.9	57	76	11	162	32	24	4	39	1.74
17081550--17081688	30	4.7	29	81	10	131	33	23	2	41	1.66
17082219--17082272	11	5.1	11	82	6	67	77	0	22	0	0.76
17082213--17082272	21	2.9	21	80	14	70	76	0	23	0	0.78
17082239--17082270	14	2.2	15	94	5	57	78	0	21	0	0.76
17082288--17082313	13	2.0	13	100	0	52	23	61	15	0	1.33
17082693--17082736	20	2.2	20	84	11	56	31	2	2	63	1.19
17082710--17082739	16	1.9	16	93	6	53	36	3	0	60	1.14
17083105--17083150	17	2.6	17	83	12	58	30	17	6	45	1.73
17083205--17083294	37	2.6	35	84	7	121	38	11	11	38	1.76
17083207--17083279	17	4.4	16	72	8	65	41	10	10	36	1.76
17083267--17083320	27	2.0	28	85	3	74	27	11	14	46	1.79
17083240--17083384	64	2.3	63	82	8	161	31	11	12	44	1.78
17083246--17083339	45	2.1	44	84	9	120	26	12	12	47	1.78
17083290--17083553	18	14.1	18	70	16	119	33	12	9	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17083160--17083356	98	2.0	99	82	4	238	31	12	10	44	1.77
17083474--17083569	37	2.5	37	85	8	113	34	12	9	43	1.75
17090663--17090719	15	3.7	16	82	15	75	84	15	0	0	0.63
17090679--17090737	11	5.4	11	81	4	66	86	8	5	0	0.70
17090663--17090727	28	2.4	27	87	5	94	84	13	1	0	0.69
17090663--17090737	15	5.2	14	79	9	71	84	12	4	0	0.76
17090663--17090727	17	3.8	17	85	6	78	84	13	1	0	0.69
17090663--17090722	22	2.6	22	84	7	75	85	15	0	0	0.61
17091608--17092831	77	15.5	80	84	7	1207	27	15	20	36	1.93
17091608--17092831	246	5.2	237	84	6	1226	27	15	20	36	1.93
17093118--17093202	30	2.9	30	91	6	131	34	22	3	40	1.71
17093121--17093287	29	5.7	28	79	11	131	32	22	5	40	1.76
17094443--17094480	20	1.9	20	88	0	58	34	21	7	36	1.82
17094603--17094648	17	2.6	17	83	12	58	30	15	8	45	1.76
17094627--17094679	28	1.9	27	92	3	88	43	13	7	35	1.72
17094702--17094771	17	4.2	17	77	10	74	38	14	11	35	1.82
17094701--17094764	34	1.9	33	90	3	101	37	15	12	34	1.85
17094785--17095044	17	14.1	18	71	16	115	32	12	10	45	1.75
17094849--17094889	21	2.0	21	90	4	66	39	12	9	39	1.76
17094783--17094915	64	2.1	61	84	4	167	30	10	11	47	1.73
17096584--17096649	7	8.6	7	76	18	53	43	1	1	53	1.19
17096587--17096652	8	8.4	8	73	18	50	45	1	1	51	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17096584--17096652	27	2.5	26	76	23	79	44	1	1	52	1.19
17096594--17096662	32	2.2	32	79	7	79	47	1	2	47	1.25
17096665--17096712	20	2.4	21	86	10	66	72	4	14	8	1.23
17098944--17099139	89	2.2	91	84	2	254	37	22	9	31	1.85
17099249--17099347	9	10.6	9	68	12	65	66	2	4	27	1.20
17099224--17099291	18	3.9	17	76	12	66	64	1	2	30	1.17
17099241--17099356	10	12.1	10	72	9	57	63	1	3	31	1.21
17099279--17099373	48	2.0	48	85	4	129	60	2	6	31	1.34
17099313--17099348	19	1.9	18	88	5	54	72	0	2	25	0.98
17099264--17099336	38	1.9	37	81	10	85	64	2	4	28	1.26
17099560--17099630	35	2.0	35	83	8	90	32	4	2	60	1.30
17099662--17099833	89	2.0	88	83	2	220	30	11	21	36	1.88
17101400--17101439	20	2.1	18	86	13	53	57	2	15	25	1.50
17103176--17103447	50	5.5	50	70	8	216	22	18	25	33	1.97
17103134--17103530	98	4.0	98	90	1	580	22	20	24	32	1.98
17122678--17122717	20	2.1	18	86	13	53	57	2	15	25	1.50
17126174--17126239	9	7.2	9	86	10	89	21	10	28	39	1.86
17126174--17126239	20	3.6	18	83	8	89	21	10	28	39	1.86
17129383--17130350	153	6.3	154	88	5	1301	52	8	9	29	1.64
17129382--17130352	310	3.2	308	88	4	1391	52	8	9	29	1.64
17130474--17130514	10	3.9	11	78	9	50	21	0	4	73	1.02
17131813--17131865	20	2.6	21	79	8	56	43	9	7	39	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17136206--17136237	14	2.1	16	88	11	50	28	0	3	68	1.04
17136261--17136294	2	18.0	2	88	11	54	50	0	0	50	1.00
17140097--17140124	2	14.0	2	100	0	56	50	0	50	0	1.00
17146588--17146627	21	1.9	21	89	0	62	27	42	5	25	1.75
17148382--17148415	5	6.6	5	86	6	50	76	2	0	20	0.92
17151455--17151512	22	2.6	22	84	7	73	43	17	3	36	1.66
17151468--17151538	21	3.4	19	84	11	70	40	15	7	36	1.74
17151968--17152074	44	2.4	44	82	3	126	30	19	20	28	1.97
17152381--17152497	44	2.7	43	84	5	128	26	27	21	24	1.99
17159945--17159983	19	2.0	21	85	10	55	69	5	10	15	1.34
17160142--17160239	21	4.7	21	78	14	78	40	16	7	35	1.76
17160155--17160252	19	4.8	19	84	10	106	38	16	9	35	1.80
17160189--17160251	21	3.1	21	90	9	112	38	14	9	38	1.78
17167350--17167387	18	2.1	18	95	0	67	47	5	10	36	1.61
17174952--17174984	16	2.1	16	100	0	66	24	39	18	18	1.92
17175743--17175784	22	1.9	22	90	0	66	26	14	35	23	1.93
17178961--17179083	40	3.1	40	91	0	201	27	10	15	46	1.79
17185514--17185610	29	3.1	34	61	36	83	29	9	14	46	1.76
17185709--17185792	9	9.4	9	73	21	63	21	0	20	58	1.40
17185710--17185742	11	3.2	11	91	8	52	18	0	18	63	1.31
17187697--17187804	40	2.5	44	75	17	118	50	12	12	25	1.74
17187721--17187803	40	2.1	40	90	4	132	46	14	12	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17199553--17199592	20	2.0	20	100	0	80	25	5	40	30	1.77
17204915--17205024	53	2.1	53	100	0	220	38	26	7	28	1.83
17205898--17205965	25	2.8	25	86	2	102	30	20	25	23	1.98
17215188--17215541	156	2.3	156	93	0	591	25	20	31	22	1.98
17215188--17215626	50	8.5	50	84	4	500	26	20	29	22	1.99
17219362--17219392	6	5.2	6	100	0	62	51	0	48	0	1.00
17233752--17233778	12	2.2	12	100	0	54	25	40	14	18	1.89
17240943--17241501	140	4.0	140	84	3	696	27	18	21	32	1.97
17240942--17241505	280	2.0	280	85	4	771	27	19	21	31	1.97
17243094--17243367	36	7.6	35	78	6	242	24	21	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75