genome.fa.s11.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  36  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11317297--11317342	24	2.0	23	82	4	56	32	4	2	60	1.28
11320656--11320680	2	12.5	2	100	0	50	52	0	0	48	1.00
11329715--11329756	9	4.7	9	80	8	50	73	2	2	21	1.06
11329883--11330319	72	6.1	72	99	0	858	69	4	4	21	1.24
11329896--11330310	21	19.6	20	67	20	165	69	3	3	22	1.21
11337263--11337296	17	2.1	17	88	5	52	20	14	0	64	1.28
11350342--11350380	20	2.0	20	85	10	53	28	0	7	64	1.21
11350908--11350961	27	2.0	28	96	3	101	57	14	3	24	1.54
11353062--11353091	10	3.0	10	90	0	51	23	0	36	40	1.55
11353742--11353819	36	2.2	36	83	0	93	25	17	32	24	1.97
11353828--11353929	36	2.8	36	89	0	141	26	20	30	22	1.98
11362687--11362766	38	2.1	37	83	2	97	25	21	21	32	1.98
11364631--11364712	28	2.9	28	96	0	146	34	15	21	28	1.95
11365728--11365859	66	2.0	66	96	0	246	45	12	15	27	1.81
11366073--11366115	18	2.5	17	81	7	52	65	0	2	32	1.06
11370280--11370322	16	2.8	15	82	6	50	62	0	0	37	0.95
11372408--11372533	59	2.1	59	81	5	139	47	25	2	24	1.64
11373241--11373387	41	3.5	41	80	6	145	34	27	14	23	1.94
11389556--11390635	540	2.0	540	96	0	1998	18	21	29	30	1.97
11402115--11402352	120	2.0	120	94	1	415	40	8	13	36	1.75
11404460--11404542	22	3.8	22	73	6	78	22	3	25	48	1.67
11404471--11404542	25	3.1	25	61	29	59	25	4	23	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11413938--11414002	29	2.2	28	78	7	67	24	18	6	50	1.69
11414133--11414190	7	8.4	7	75	21	52	60	0	1	37	1.07
11414122--11414165	20	2.2	20	92	4	72	59	0	2	38	1.10
11420660--11420698	11	3.4	11	80	13	51	41	12	0	46	1.42
11420649--11420698	24	2.1	24	96	0	91	40	14	0	46	1.44
11420649--11420690	13	3.4	12	80	12	50	38	16	0	45	1.48
11421110--11421150	9	4.8	8	85	14	55	68	0	0	31	0.90
11421110--11421150	17	2.3	18	95	4	75	68	0	0	31	0.90
11421118--11421151	9	3.9	9	92	7	61	67	0	0	32	0.91
11425090--11425139	24	2.1	24	81	7	57	62	6	2	30	1.31
11428974--11429017	22	1.9	23	81	9	54	31	13	2	52	1.53
11432977--11433004	6	4.7	6	100	0	56	17	17	50	14	1.79
11441156--11441205	25	2.0	25	92	0	82	20	22	4	54	1.61
11444823--11445015	50	3.8	50	89	3	289	26	22	29	21	1.99
11445835--11445897	30	2.1	30	90	0	99	55	14	4	25	1.58
11453348--11453686	44	7.8	43	72	6	218	27	24	19	28	1.98
11453335--11453755	217	1.9	217	83	3	542	26	25	18	29	1.98
11453677--11454217	128	4.2	124	88	3	706	25	24	18	31	1.98
11453677--11454372	256	2.8	253	83	8	841	25	24	18	31	1.97
11454113--11454301	103	1.8	103	95	0	342	25	24	17	32	1.97
11455665--11455716	7	7.0	7	83	14	61	15	13	0	71	1.15
11455674--11455717	7	5.6	8	86	13	65	13	11	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11455665--11455717	15	3.5	15	92	5	81	15	13	0	71	1.14
11470323--11470354	3	10.7	3	100	0	64	31	0	0	68	0.90
11470494--11470522	12	2.4	12	100	0	58	41	10	0	48	1.37
11471645--11471748	44	2.5	40	77	18	106	32	2	25	38	1.71
11471811--11471839	6	4.8	6	100	0	58	17	0	13	68	1.20
11471857--11471980	56	2.2	56	81	10	144	50	4	0	44	1.26
11473276--11474027	372	2.0	375	95	2	1357	28	7	22	42	1.79
11474890--11474984	44	2.2	44	92	0	154	22	34	9	33	1.86
11482964--11483663	43	16.3	43	96	1	1201	22	23	21	33	1.97
11485205--11485308	49	2.1	49	92	0	172	49	10	7	32	1.66
11494997--11495171	87	2.0	87	96	0	323	29	17	18	34	1.94
11496816--11496908	46	2.1	46	83	4	118	40	24	2	32	1.67
11496890--11496940	16	3.2	16	77	0	57	31	21	1	45	1.63
11497165--11497215	26	2.0	25	85	14	68	43	0	9	47	1.36
11497200--11497228	14	2.1	14	100	0	58	62	0	0	37	0.96
11518352--11518591	119	2.0	120	99	0	473	40	11	6	41	1.67
11518583--11518652	20	3.8	18	71	17	63	62	4	1	31	1.23
11519879--11519948	20	3.8	18	71	17	63	62	4	1	31	1.23
11520381--11520434	16	3.4	16	76	5	56	64	1	0	33	1.04
11520382--11520463	31	2.6	31	83	11	96	63	3	0	32	1.12
11520382--11520498	31	3.6	32	75	15	82	60	2	0	35	1.16
11522986--11523032	23	2.0	23	95	0	85	46	10	8	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11525092--11525260	84	2.0	84	100	0	338	18	31	16	33	1.94
11532806--11532839	16	2.1	16	100	0	68	17	5	11	64	1.45
11535205--11535250	23	2.0	23	100	0	92	34	26	0	39	1.57
11539503--11539550	17	2.8	17	81	15	62	37	2	18	41	1.63
11551776--11551830	22	2.5	22	87	0	83	23	30	25	20	1.98
11553007--11553083	39	2.0	39	87	5	111	20	16	15	46	1.84
11556626--11556706	40	2.0	41	97	2	155	35	12	9	41	1.76
11559348--11559438	29	3.2	29	78	9	89	63	1	5	29	1.24
11559829--11559868	8	4.9	8	85	14	55	12	12	2	72	1.22
11559815--11559860	15	3.1	16	84	12	62	15	10	4	69	1.32
11561914--11561965	17	3.1	16	88	5	68	57	0	1	40	1.10
11561914--11561965	16	3.2	16	88	2	68	57	0	1	40	1.10
11566736--11566760	13	1.9	13	100	0	50	72	4	0	24	1.02
11572449--11572507	26	2.3	25	82	5	73	32	11	11	44	1.78
11577457--11577518	26	2.4	27	81	8	74	35	12	11	40	1.80
11578604--11578668	28	2.2	30	81	13	89	40	6	10	43	1.65
11578614--11578672	28	2.1	28	96	0	109	35	5	10	49	1.59
11579454--11579529	27	2.7	27	84	11	91	42	6	21	30	1.78
11585940--11586010	25	2.8	24	78	16	81	23	26	19	29	1.98
11590879--11590915	19	2.0	19	89	5	58	16	8	0	75	1.02
11591702--11591787	27	3.3	25	82	9	93	32	6	1	59	1.32
11591694--11591768	3	25.0	3	81	10	91	33	2	1	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11596417--11596473	25	2.3	25	78	0	69	28	24	19	28	1.98
11600600--11600837	76	3.1	76	80	1	226	25	17	20	36	1.94
11602358--11602392	17	2.1	17	88	0	52	54	0	14	31	1.40
11602465--11602491	13	2.1	13	100	0	54	29	0	37	33	1.58
11604487--11604595	53	2.0	55	82	7	134	44	2	2	50	1.30
11614606--11614665	31	1.9	31	93	0	102	31	13	10	45	1.76
11614881--11614912	6	5.5	6	96	3	57	53	0	34	12	1.39
11615246--11615288	21	2.0	21	81	0	50	37	9	25	27	1.87
11615393--11615426	3	11.3	3	100	0	68	67	0	0	32	0.91
11615510--11615556	20	2.4	20	89	3	69	38	0	4	57	1.18
11618151--11618208	22	2.9	18	75	20	62	31	5	13	50	1.64
11618647--11618712	33	2.0	33	81	0	78	28	1	48	21	1.59
11621787--11621825	16	2.4	16	86	0	51	30	2	33	33	1.72
11621849--11622272	212	2.0	210	91	1	679	37	16	10	34	1.83
11623354--11623410	18	3.2	18	67	18	55	33	3	22	40	1.71
11623336--11623410	36	2.1	37	97	2	143	33	2	22	41	1.68
11623891--11623925	16	2.2	16	89	0	52	5	8	14	71	1.29
11629476--11629504	5	5.8	5	100	0	58	82	0	17	0	0.66
11629992--11630025	17	2.0	17	94	0	59	70	0	14	14	1.17
11634757--11634791	16	2.2	16	89	0	52	5	8	14	71	1.29
11652763--11652878	35	3.3	35	100	0	232	50	9	19	19	1.74
11664619--11664905	153	1.9	153	88	5	438	38	16	4	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11667481--11667545	32	2.0	33	96	3	123	18	27	20	33	1.96
11672044--11672186	27	5.3	27	86	0	160	18	14	20	45	1.85
11672042--11672199	54	2.9	53	82	4	183	18	14	19	46	1.83
11674781--11674876	37	2.6	36	79	8	95	31	23	1	43	1.61
11685082--11685139	25	2.3	25	81	0	80	12	36	27	24	1.91
11692686--11692784	51	1.9	52	85	6	139	33	7	21	38	1.80
11695601--11695632	17	1.9	17	93	6	57	43	0	25	31	1.55
11703743--11703930	41	4.6	41	93	0	295	26	18	21	33	1.96
11703747--11703984	123	1.9	123	80	5	275	26	17	23	32	1.97
11706648--11706689	22	1.9	22	90	0	66	57	4	21	16	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75