genome.fa.s11.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  72  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23433523--23433573	27	1.9	26	84	4	66	68	3	0	27	1.07
23442104--23442136	17	2.0	17	88	5	50	48	24	0	27	1.51
23444043--23444073	4	7.8	4	92	0	53	48	22	3	25	1.66
23445719--23445807	46	2.0	44	89	8	135	37	31	4	26	1.77
23445789--23445857	16	4.3	16	94	0	120	23	34	4	37	1.75
23450600--23450629	15	1.9	16	93	6	53	43	0	6	50	1.28
23450622--23450655	18	1.9	17	88	5	50	41	0	2	55	1.15
23450802--23450985	44	4.5	41	66	25	120	34	30	3	31	1.74
23450819--23450907	44	2.0	46	88	4	137	37	29	4	29	1.77
23450897--23451020	16	7.9	16	69	13	87	31	31	1	35	1.68
23450842--23451032	78	2.4	78	94	0	328	33	31	3	31	1.74
23453922--23454126	45	4.6	45	72	1	171	31	19	23	25	1.98
23453896--23454126	44	5.2	44	72	4	221	29	19	23	26	1.99
23453897--23454126	89	2.6	89	97	0	433	29	19	23	26	1.98
23454105--23454148	22	2.0	22	95	0	79	38	18	20	22	1.93
23454016--23454237	111	2.0	111	89	1	338	31	19	23	25	1.98
23454127--23455304	89	13.2	89	98	0	2182	28	18	25	26	1.98
23456835--23456883	18	2.8	17	81	9	62	30	4	2	63	1.24
23456844--23456900	21	2.7	21	78	13	71	28	3	5	63	1.33
23456989--23457025	18	2.0	18	89	5	56	35	0	2	62	1.10
23458706--23458742	19	1.9	19	89	10	58	43	0	10	45	1.39
23465863--23465914	26	2.0	26	84	0	68	51	3	1	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23466124--23466204	18	4.3	18	75	17	76	24	1	2	71	1.05
23466166--23466212	24	2.0	24	82	0	58	21	2	6	70	1.20
23479878--23479911	5	7.2	5	93	6	54	79	0	0	20	0.73
23479875--23479908	13	2.6	14	90	9	54	82	0	0	17	0.67
23484442--23484466	2	12.5	2	100	0	50	48	0	0	52	1.00
23484557--23484600	21	2.1	21	91	8	72	52	0	4	43	1.22
23495423--23495473	23	2.2	23	89	0	75	45	0	7	47	1.32
23501543--23501585	19	2.3	19	88	4	61	25	6	0	67	1.15
23503414--23503446	16	2.1	16	88	11	50	3	9	12	75	1.14
23504130--23504154	7	3.6	7	100	0	50	52	0	0	48	1.00
23504312--23504343	15	2.1	15	94	0	55	37	12	3	46	1.57
23507539--23507603	28	2.4	28	86	2	105	40	6	0	53	1.26
23508550--23508613	21	3.1	21	80	6	69	37	1	1	59	1.16
23508641--23508695	28	2.0	28	85	7	76	49	1	0	49	1.11
23512456--23512509	21	2.6	21	81	0	72	12	12	38	35	1.82
23516531--23516622	20	4.4	20	76	10	78	19	0	33	46	1.50
23516541--23516663	35	3.5	34	76	15	117	21	0	33	44	1.58
23516980--23517171	21	9.1	21	67	18	78	20	0	29	49	1.53
23517304--23517362	20	2.9	19	82	9	64	23	1	28	45	1.63
23520507--23520596	45	2.0	44	89	6	137	33	28	5	32	1.80
23520576--23520624	16	3.1	16	93	0	89	22	36	6	34	1.79
23521316--23521390	14	5.2	14	75	18	57	22	2	25	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23521431--23521468	20	1.9	19	89	5	58	21	0	23	55	1.44
23534065--23534138	37	2.0	37	83	0	94	33	18	10	36	1.86
23535578--23535615	18	2.1	18	90	5	58	15	18	2	63	1.43
23541068--23541201	67	2.0	67	98	0	259	44	8	23	23	1.81
23542386--23542438	6	8.8	6	100	0	106	16	15	0	67	1.23
23556213--23556255	18	2.3	18	88	4	68	62	4	0	32	1.15
23556213--23556288	19	4.2	18	73	9	66	56	6	0	36	1.25
23556212--23556262	19	2.6	20	84	12	70	62	7	0	29	1.23
23558579--23558849	137	2.0	134	86	5	375	26	15	19	38	1.92
23563055--23563104	22	2.3	22	82	0	64	64	20	8	8	1.46
23563071--23563103	11	3.0	11	100	0	66	63	18	9	9	1.49
23566604--23566951	18	19.0	18	66	16	126	46	11	12	29	1.77
23566613--23566937	35	8.9	36	68	16	132	46	11	12	29	1.76
23566618--23567020	18	21.6	20	66	19	118	46	10	13	29	1.77
23566698--23566748	20	2.4	21	77	9	59	49	9	15	25	1.75
23566613--23566943	36	9.0	38	71	18	150	46	10	12	29	1.76
23566979--23567018	21	1.9	21	90	10	64	40	10	17	32	1.83
23567330--23567410	10	8.5	10	78	13	91	0	16	0	83	0.64
23567337--23567405	7	9.9	7	79	14	72	0	15	0	84	0.63
23567330--23567410	17	4.9	17	77	8	87	0	16	0	83	0.64
23567330--23567406	28	2.7	27	84	11	93	0	15	0	84	0.62
23567330--23567407	29	2.8	28	88	5	104	0	15	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23567330--23567407	36	2.1	38	86	11	108	0	15	0	84	0.62
23567334--23567387	1	54.0	1	77	0	54	0	11	0	88	0.50
23567478--23567517	19	2.1	19	90	9	64	0	30	42	27	1.56
23567541--23567574	13	2.6	13	86	13	52	0	8	8	82	0.85
23567541--23567575	14	2.6	14	86	4	54	0	8	8	82	0.83
23567692--23567723	3	10.7	3	100	0	64	0	31	0	68	0.90
23568077--23568171	29	3.2	30	86	5	140	38	2	22	36	1.66
23586446--23586491	20	2.2	21	92	3	76	34	0	0	65	0.93
23586456--23586499	20	2.2	20	83	0	52	34	0	6	59	1.24
23589382--23589433	16	3.5	14	80	17	52	61	0	1	36	1.07
23591710--23591911	97	2.1	97	100	0	404	21	28	15	33	1.95
23595393--23595425	16	2.1	16	88	5	50	36	0	0	63	0.95
23595723--23595778	19	2.9	19	92	7	96	64	0	0	35	0.94
23595716--23595778	19	3.3	19	82	10	83	63	1	0	34	1.04
23598289--23598351	31	2.0	31	100	0	126	52	19	0	28	1.46
23599176--23599202	13	2.1	13	100	0	54	29	14	7	48	1.71
23600239--23600356	11	11.4	11	72	21	103	39	2	0	57	1.12
23600237--23600317	19	4.2	19	70	17	76	44	1	0	54	1.08
23600191--23600371	32	6.1	31	86	10	238	37	2	0	60	1.09
23600665--23600710	23	2.0	24	87	8	69	71	6	0	21	1.08
23600816--23600874	27	2.2	27	84	6	75	27	3	1	67	1.16
23600815--23600875	28	2.2	28	80	11	72	26	3	1	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23600957--23600998	19	2.2	19	83	12	50	35	4	4	54	1.42
23605197--23605229	18	1.9	18	88	11	52	54	12	0	33	1.37
23616853--23616877	7	3.6	7	100	0	50	48	16	0	36	1.46
23621063--23621088	13	2.0	13	100	0	52	23	7	15	53	1.67
23621286--23621318	11	2.9	11	95	4	57	27	0	0	72	0.85
23624708--23624930	110	2.0	110	99	0	437	37	13	19	29	1.90
23630741--23630796	26	2.1	28	83	6	71	28	7	5	58	1.46
23632512--23632551	16	2.5	16	91	0	62	47	2	7	42	1.45
23632540--23632682	68	2.1	67	93	2	252	41	4	9	44	1.57
23632624--23632651	9	3.1	9	100	0	56	32	0	10	57	1.33
23632748--23632791	24	1.9	24	90	9	74	61	2	0	36	1.09
23637657--23637723	20	3.3	20	80	11	68	44	1	1	52	1.19
23637666--23637729	9	6.7	9	74	22	51	46	1	0	51	1.10
23637657--23637716	11	5.7	10	74	16	50	45	1	1	51	1.21
23637697--23637754	20	3.1	18	83	14	64	39	0	3	56	1.16
23637843--23637916	29	2.5	29	82	4	85	24	14	14	45	1.83
23640151--23640179	2	14.5	2	100	0	58	48	0	0	51	1.00
23641883--23641908	13	2.0	13	100	0	52	30	7	15	46	1.74
23643543--23643669	63	2.0	63	100	0	254	37	14	28	19	1.91
23643896--23643943	21	2.3	21	89	10	73	14	16	2	66	1.34
23644874--23644915	7	6.0	7	81	18	52	69	0	16	14	1.20
23644874--23644915	21	2.0	21	86	9	59	69	0	16	14	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23646149--23646359	87	2.4	87	89	0	314	29	23	22	24	1.99
23646156--23646293	44	3.2	44	67	17	133	28	23	21	26	1.99
23646416--23646605	44	4.3	45	69	12	162	32	20	19	27	1.97
23646360--23647197	132	6.3	132	91	1	1228	29	17	24	28	1.98
23646818--23647140	44	7.2	44	64	12	118	28	17	24	29	1.98
23646980--23647166	44	4.2	44	65	13	114	31	17	24	27	1.97
23647440--23647557	44	2.7	44	80	4	130	27	21	26	24	1.99
23648485--23648602	44	2.7	44	80	4	139	27	21	26	24	1.99
23655058--23655213	56	2.7	59	74	15	146	24	16	14	44	1.85
23659496--23659644	49	3.0	49	99	0	289	24	18	9	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75