genome.fa.s11.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  73  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23663425--23663634	89	2.3	89	84	6	264	37	18	10	34	1.85
23663795--23663840	19	2.3	20	85	3	58	63	2	0	34	1.07
23663789--23663870	29	2.8	30	77	15	82	62	3	0	34	1.13
23663816--23663880	19	3.4	19	77	12	62	64	3	1	30	1.18
23663816--23663880	29	2.3	27	76	10	67	64	3	1	30	1.18
23664038--23664090	9	5.9	9	83	16	65	30	3	1	64	1.22
23664111--23664158	10	4.8	10	87	5	62	37	4	0	58	1.18
23678350--23678378	12	2.3	13	94	5	51	41	0	3	55	1.17
23678350--23678382	12	2.6	13	85	9	50	39	0	3	57	1.14
23681041--23681114	29	2.5	29	82	4	85	24	13	13	48	1.78
23682821--23682875	22	2.5	22	81	0	65	14	7	14	63	1.50
23685518--23685859	170	2.0	172	98	1	670	47	5	4	42	1.46
23691876--23691919	6	7.2	6	90	10	63	86	0	13	0	0.57
23691878--23691920	7	6.6	7	92	7	65	88	0	11	0	0.52
23691878--23691919	20	2.2	20	91	8	70	88	0	11	0	0.53
23703022--23703059	18	2.1	18	85	9	51	31	10	15	42	1.81
23706275--23706311	18	2.1	18	94	0	65	54	2	0	43	1.14
23706276--23706315	21	1.9	21	85	10	55	55	2	0	42	1.13
23713373--23713701	51	6.1	51	80	14	331	29	22	15	32	1.95
23713541--23713576	17	2.1	17	100	0	72	36	11	22	30	1.89
23713492--23713627	68	2.0	68	95	0	245	31	20	16	30	1.95
23713440--23713683	119	2.0	120	93	1	427	30	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23713391--23713701	170	1.8	169	92	0	532	29	22	16	31	1.96
23713687--23713740	7	7.7	7	89	0	81	29	25	3	40	1.73
23717346--23717380	15	2.2	16	90	5	54	34	2	0	62	1.10
23717596--23717681	18	4.7	18	72	16	59	38	5	1	54	1.32
23717649--23717688	2	20.0	2	94	0	71	47	2	0	50	1.14
23717559--23717673	34	3.6	29	73	17	79	37	6	1	53	1.38
23719736--23719798	19	3.3	18	80	8	65	66	3	3	26	1.22
23719775--23719814	17	2.4	17	82	0	53	70	0	0	30	0.88
23719723--23719852	9	14.0	9	67	18	54	61	3	3	32	1.27
23720025--23720087	21	2.9	20	77	13	54	53	4	4	36	1.43
23720230--23720261	10	3.4	10	83	16	50	28	0	0	71	0.86
23722197--23722263	27	2.4	28	80	11	68	62	0	1	35	1.04
23726029--23726067	20	2.0	20	94	0	69	33	5	0	61	1.18
23726480--23726519	20	2.0	20	90	0	62	27	10	12	50	1.72
23726465--23726531	34	1.9	35	90	3	109	31	8	13	46	1.74
23726459--23726535	14	5.0	15	71	20	52	33	9	14	42	1.77
23729590--23729669	30	2.6	32	77	13	89	36	12	15	36	1.85
23730993--23731046	16	3.4	17	87	5	69	38	3	27	29	1.74
23739330--23739362	2	16.5	2	100	0	66	51	0	0	48	1.00
23739719--23739794	40	1.9	40	86	5	109	36	22	19	21	1.95
23740422--23740451	15	2.0	15	100	0	60	26	0	46	26	1.53
23744932--23745156	43	5.2	43	82	5	251	22	18	31	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23744925--23745131	87	2.4	86	84	7	267	23	16	32	27	1.96
23745218--23745255	13	2.9	13	96	0	67	36	21	26	15	1.93
23748744--23748794	18	2.8	18	84	3	57	54	1	0	43	1.11
23748791--23748840	21	2.3	21	83	10	57	68	2	2	28	1.12
23754893--23754920	12	2.3	12	100	0	56	50	14	7	28	1.69
23760411--23760450	14	2.9	14	88	0	53	25	7	30	37	1.83
23760993--23761248	127	2.0	128	90	2	408	36	10	12	40	1.78
23774045--23774080	6	5.8	6	96	3	63	36	16	47	0	1.47
23779155--23779209	27	2.0	27	96	0	101	40	7	12	40	1.71
23790479--23790623	45	3.2	45	93	1	229	40	18	19	21	1.91
23790479--23790640	45	3.8	41	86	7	152	38	19	20	20	1.93
23790825--23790911	39	2.2	39	83	4	104	39	20	5	34	1.77
23791833--23791872	5	8.0	5	100	0	80	60	0	0	40	0.97
23799304--23799337	2	17.0	2	100	0	68	50	0	0	50	1.00
23801355--23801647	146	2.0	147	99	0	579	43	12	7	36	1.71
23802361--23802483	28	4.4	28	67	22	96	42	1	7	48	1.40
23802324--23802498	84	2.1	85	97	1	334	44	2	6	46	1.42
23803077--23803120	10	4.4	10	82	0	61	72	0	0	27	0.85
23803570--23803613	3	14.7	3	100	0	88	65	0	0	34	0.93
23804443--23804475	17	1.9	17	93	0	57	42	6	24	27	1.78
23808100--23808166	17	3.9	17	100	0	134	41	5	28	23	1.78
23809656--23809693	18	2.1	18	85	9	51	15	15	7	60	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23809688--23809810	12	9.8	12	69	11	68	26	13	8	52	1.68
23809688--23809805	25	4.7	24	76	12	103	25	12	8	53	1.67
23809913--23809951	18	2.2	18	85	0	51	25	10	0	64	1.25
23811018--23811127	4	27.5	4	100	0	220	25	0	24	50	1.50
23824924--23825053	66	2.0	66	96	0	242	24	26	22	26	2.00
23825022--23825083	30	2.1	30	100	0	124	30	22	20	25	1.98
23824956--23825149	96	2.0	96	97	0	370	26	25	21	26	2.00
23832278--23832354	37	2.1	37	92	0	127	44	12	12	29	1.81
23840621--23840672	23	2.4	22	81	9	61	13	46	23	17	1.83
23841554--23841615	22	2.4	25	78	21	67	20	6	6	66	1.38
23841554--23841612	25	2.2	28	82	11	70	22	6	6	64	1.42
23841669--23841702	16	2.0	18	88	11	54	32	5	2	58	1.37
23843458--23843722	133	2.0	133	99	0	521	26	27	20	25	1.99
23848033--23848072	9	4.4	9	83	0	53	32	2	12	52	1.52
23850446--23850544	23	4.3	23	89	3	146	23	21	27	28	1.99
23853952--23854142	90	2.1	89	82	5	226	46	11	16	25	1.80
23854026--23854086	32	1.9	32	96	0	113	42	9	21	26	1.84
23854027--23854095	32	2.2	32	89	5	104	46	10	20	23	1.80
23859699--23859760	32	1.9	32	100	0	124	40	6	20	32	1.78
23863004--23863532	264	2.0	264	99	0	1049	41	8	16	33	1.79
23873301--23873344	22	2.0	21	87	12	63	29	0	2	68	1.02
23887424--23887568	35	4.1	35	81	3	166	42	15	15	27	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23889611--23889648	16	2.5	16	87	8	53	21	13	2	63	1.42
23890494--23890572	40	2.0	40	87	0	113	24	13	18	43	1.87
23894100--23894251	75	2.0	76	98	1	297	33	15	5	45	1.69
23894117--23894233	37	3.1	37	62	24	91	31	17	5	46	1.70
23903084--23903141	29	2.0	29	82	0	71	34	15	22	27	1.94
23904019--23904081	32	2.0	32	90	0	99	38	15	17	28	1.91
23909105--23909184	30	2.7	30	98	0	151	30	8	23	37	1.85
23920204--23920241	17	2.2	17	86	9	51	36	0	2	60	1.11
23921108--23921157	15	3.3	15	74	20	50	50	2	4	44	1.32
23926115--23926153	20	2.0	20	84	0	51	56	2	10	30	1.46
23926185--23926220	15	2.5	14	86	8	54	44	8	0	47	1.33
23954187--23954227	19	2.2	19	86	0	55	53	2	7	36	1.42
23954235--23954278	9	4.9	9	80	0	52	15	4	0	79	0.89
23954238--23954276	17	2.3	18	86	8	55	15	5	0	79	0.90
23954617--23954657	12	3.6	12	77	12	50	53	0	7	39	1.29
23964405--23964611	103	2.0	104	98	0	398	35	18	16	29	1.93
23978917--23978967	20	2.5	20	81	12	59	64	3	3	27	1.28
23995793--23995827	16	2.1	18	89	10	56	45	5	2	45	1.41
24005096--24005132	7	5.3	7	100	0	74	27	29	13	29	1.94
24010968--24011015	22	2.1	23	84	3	62	43	6	0	50	1.27
24017012--24017066	3	18.3	3	100	0	110	65	0	0	34	0.93
24019552--24019602	17	2.9	17	80	5	66	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24019552--24019598	18	2.7	17	83	6	58	40	0	0	59	0.97
24021402--24021427	5	5.2	5	100	0	52	0	19	0	80	0.71
24021571--24021595	9	2.8	9	100	0	50	12	0	0	88	0.53
24034375--24034515	73	1.9	73	82	5	178	34	22	22	20	1.97
24036453--24036486	17	2.0	18	88	11	54	47	0	11	41	1.40
24058148--24058201	25	2.2	25	83	6	65	57	16	14	11	1.65
24065897--24065931	18	1.9	18	88	0	52	28	2	2	65	1.21
24070925--24070975	19	2.7	19	90	0	75	64	3	1	29	1.22
24071066--24071112	20	2.3	21	88	3	78	55	4	2	38	1.31
24071066--24071125	21	2.9	20	85	5	66	56	3	1	38	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75