genome.fa.s11.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  56  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17945761--17945830	21	3.3	20	71	15	61	20	20	17	42	1.89
17945756--17945868	42	2.7	42	83	5	129	15	23	17	42	1.88
17945816--17945885	21	3.4	21	76	3	63	11	28	22	37	1.89
17946420--17946460	19	2.2	19	95	0	73	34	0	31	34	1.58
17950151--17950325	87	2.0	88	98	1	343	39	3	9	48	1.52
17951063--17951088	5	5.2	5	100	0	52	42	19	19	19	1.90
17951579--17951638	30	2.0	31	86	3	86	40	0	38	21	1.54
17952186--17952216	14	2.1	15	94	5	55	70	0	0	29	0.87
17954951--17954996	3	15.3	3	90	0	74	63	0	4	32	1.14
17956620--17956760	70	2.0	70	97	0	264	39	18	3	39	1.68
17956881--17956925	23	2.0	23	95	0	81	40	15	8	35	1.79
17956882--17956931	23	2.2	23	88	0	73	42	16	10	32	1.81
17960284--17960503	51	4.3	52	79	4	234	30	26	17	25	1.97
17967908--17968128	51	4.3	52	79	3	200	30	26	17	25	1.97
17974145--17974178	17	2.0	17	100	0	68	47	5	29	17	1.71
17986859--17986977	29	4.1	29	81	0	130	29	10	16	42	1.82
17986985--17987059	29	2.6	29	85	4	89	22	18	21	37	1.94
17988635--17988676	22	2.0	21	90	4	66	30	4	33	30	1.78
17994624--17994779	43	3.7	42	78	8	163	28	16	26	28	1.97
17998391--17998416	7	3.7	7	100	0	52	15	0	0	84	0.62
18009060--18009095	19	1.9	19	88	5	56	5	25	16	52	1.65
18009083--18009205	25	5.2	25	78	11	141	3	24	23	48	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18009066--18009133	19	3.3	19	69	21	55	4	23	22	50	1.67
18009133--18009177	19	2.4	19	92	0	72	2	24	22	51	1.60
18009108--18009215	44	2.5	44	90	0	171	1	24	23	50	1.59
18009066--18009205	69	2.0	69	88	0	208	3	24	22	49	1.66
18009179--18009215	19	1.9	19	94	0	65	2	27	18	51	1.60
18013287--18013334	18	2.7	18	96	0	87	35	12	12	39	1.81
18013755--18013927	72	2.4	72	80	9	201	26	8	10	54	1.62
18020777--18020821	13	3.5	13	84	0	63	37	31	8	22	1.85
18021804--18021855	25	2.1	25	85	0	68	50	17	7	25	1.72
18022218--18022243	9	2.9	9	100	0	52	69	7	0	23	1.14
18022227--18022272	19	2.3	20	77	7	58	63	2	0	34	1.07
18026586--18026626	3	13.7	3	84	0	55	34	31	0	34	1.58
18026587--18026626	12	3.3	12	92	0	62	35	30	0	35	1.58
18032823--18032857	16	2.1	17	89	5	54	65	8	8	17	1.44
18042719--18042882	78	2.1	78	93	0	274	48	3	25	23	1.65
18051982--18052258	88	3.2	88	88	3	432	33	15	15	35	1.89
18052364--18052405	21	2.0	21	100	0	84	38	28	4	28	1.77
18059924--18059948	13	1.9	13	100	0	50	8	0	24	68	1.16
18061413--18061437	13	1.9	13	100	0	50	8	0	24	68	1.16
18065025--18065100	30	2.6	28	79	4	80	27	19	23	28	1.98
18066247--18066292	22	2.1	22	83	0	56	32	21	15	30	1.94
18066247--18066379	51	2.7	49	76	3	140	33	21	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18066254--18066390	49	2.7	51	78	2	152	32	23	16	27	1.96
18071879--18072256	44	8.6	44	74	2	274	31	19	19	29	1.96
18071885--18072134	133	1.9	132	81	0	302	31	18	21	29	1.97
18071881--18072184	89	3.4	87	78	6	274	31	18	20	28	1.97
18072647--18072678	15	2.1	15	94	0	55	62	25	12	0	1.30
18073777--18073807	4	7.8	4	92	0	53	22	0	3	74	0.96
18074748--18074924	53	3.4	53	91	3	297	36	13	24	25	1.92
18075577--18076758	394	3.0	393	94	1	2041	38	13	21	25	1.90
18082330--18082355	10	2.6	10	100	0	52	92	0	7	0	0.39
18084367--18084418	22	2.3	23	80	6	63	32	0	0	67	0.91
18084413--18084456	17	2.6	17	92	0	70	13	15	15	54	1.71
18086887--18086922	14	2.7	13	91	8	63	55	0	0	44	0.99
18087016--18087040	8	3.1	8	100	0	50	40	0	0	60	0.97
18087035--18087074	13	3.2	12	92	7	62	30	2	2	65	1.19
18095211--18095261	23	2.2	23	82	3	57	60	9	11	17	1.57
18099299--18099343	22	2.2	20	84	15	56	17	11	2	68	1.29
18113207--18113250	23	1.9	23	85	0	61	47	6	4	40	1.50
18115347--18115403	6	9.2	6	96	3	96	64	0	19	15	1.28
18118450--18118514	25	2.6	26	78	9	73	36	12	12	38	1.80
18126034--18126076	20	2.2	19	84	12	52	11	18	16	53	1.72
18133668--18133747	39	2.1	39	92	0	133	32	17	16	33	1.92
18133802--18133834	13	2.5	13	95	0	57	30	15	18	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18137020--18137044	9	2.8	9	100	0	50	60	0	8	32	1.26
18136671--18137431	379	2.0	379	96	0	1387	29	17	16	37	1.91
18137399--18137443	9	5.1	9	89	2	56	60	2	4	33	1.29
18137691--18137723	15	2.1	16	88	5	50	36	0	6	57	1.23
18137767--18137808	17	2.5	17	77	14	52	69	0	4	26	1.08
18138141--18138185	19	2.4	19	85	7	56	55	22	0	22	1.44
18145797--18145853	15	3.8	15	78	0	51	15	3	8	71	1.24
18150229--18150313	25	3.5	24	77	16	79	74	0	22	3	0.97
18150272--18150322	7	7.0	7	82	8	57	68	0	27	3	1.07
18150264--18150313	16	3.2	16	81	15	61	74	0	24	2	0.93
18153877--18153913	18	2.0	19	85	15	51	75	0	18	5	0.99
18159611--18159697	25	3.5	25	78	6	95	22	24	20	32	1.98
18166558--18166602	18	2.5	18	92	0	72	46	31	2	20	1.62
18169498--18171106	804	2.0	805	99	0	3211	33	15	18	32	1.92
18185855--18185891	18	2.1	18	89	0	56	45	5	10	37	1.62
18189213--18189256	22	2.0	21	82	8	52	36	2	9	52	1.46
18202324--18202517	96	2.0	97	98	1	381	31	21	13	32	1.93
18212034--18212071	9	4.2	9	96	0	67	52	23	13	10	1.71
18213858--18213893	18	2.0	18	88	0	54	41	30	8	19	1.81
18216923--18216947	10	2.5	10	100	0	50	60	8	0	32	1.26
18218293--18218431	70	2.0	70	94	0	242	30	23	12	33	1.91
18218738--18218830	40	2.3	39	80	7	96	33	21	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18218886--18219044	41	3.9	40	84	1	201	21	19	30	28	1.97
18219299--18219329	14	2.1	15	94	5	55	29	0	32	38	1.57
18219302--18219387	21	4.0	22	73	8	61	23	1	37	38	1.63
18221660--18221738	39	2.0	39	87	0	113	30	11	21	36	1.89
18222587--18222795	2	104.5	2	100	0	418	0	50	0	49	1.00
18224160--18224392	43	5.4	43	81	6	251	25	18	29	26	1.98
18224165--18224385	85	2.6	86	84	5	270	26	19	28	25	1.98
18227835--18227900	20	3.4	19	78	15	73	36	1	6	56	1.34
18227835--18227900	19	3.4	18	80	15	71	36	1	6	56	1.34
18228807--18229180	43	8.7	43	90	0	563	24	30	18	25	1.98
18229687--18229741	21	2.6	21	100	0	110	34	18	18	29	1.94
18233618--18233652	16	2.2	16	90	5	54	31	2	34	31	1.73
18234681--18234752	33	2.2	33	85	5	92	31	38	5	23	1.78
18234530--18234836	110	2.8	110	81	10	267	42	27	2	28	1.70
18235526--18235721	41	4.8	41	87	2	270	31	25	21	21	1.98
18235540--18235722	81	2.2	82	89	0	269	32	26	21	20	1.97
18242571--18242717	42	3.5	42	80	1	143	19	23	17	40	1.91
18242571--18242664	21	4.5	21	67	2	64	19	21	18	41	1.90
18250982--18251050	34	2.0	34	94	0	120	37	18	14	28	1.91
18252677--18252870	20	9.8	20	67	5	79	24	20	19	35	1.96
18252667--18252751	40	2.1	40	82	4	100	24	18	20	36	1.95
18252667--18252811	60	2.4	60	83	2	175	24	20	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18252744--18252859	40	2.9	40	81	1	126	25	21	19	33	1.97
18254835--18254938	39	2.7	38	76	10	104	18	31	20	29	1.96
18260528--18260721	50	3.7	51	80	6	194	28	21	25	24	1.99
18260725--18260770	23	2.0	23	100	0	92	47	21	13	17	1.81
18260992--18261030	12	3.2	12	85	0	51	51	5	23	20	1.67
18263418--18263523	50	2.1	50	85	0	140	28	21	30	19	1.98
18263433--18263611	50	3.6	50	79	5	168	27	19	29	23	1.98
18263813--18263862	20	2.5	20	75	15	59	60	6	22	12	1.53
18267983--18268061	27	2.9	27	77	3	79	41	25	13	18	1.88
18273176--18273224	14	3.5	14	85	0	71	40	8	20	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75