genome.fa.s11.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  55  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17649277--17649544	43	6.3	43	79	6	147	26	18	25	29	1.98
17649320--17649544	43	5.3	43	81	3	204	26	17	27	28	1.98
17649320--17649502	85	2.1	86	84	5	228	26	17	27	27	1.98
17650251--17650303	25	2.1	25	85	0	70	28	20	24	26	1.99
17651433--17651575	26	5.3	26	78	10	108	23	28	7	39	1.82
17651465--17651531	31	2.2	31	97	0	125	25	23	11	38	1.89
17652012--17652062	25	2.0	25	100	0	102	31	31	11	25	1.92
17666718--17666758	20	2.0	20	100	0	82	31	9	24	34	1.88
17668487--17668521	12	3.0	11	88	12	52	51	25	0	22	1.48
17674395--17674442	19	2.5	19	96	0	87	31	0	20	47	1.50
17677092--17677305	105	2.0	105	99	0	419	35	5	17	41	1.72
17677846--17677890	23	2.0	23	100	0	90	26	4	6	62	1.39
17677848--17677897	23	2.2	23	88	0	73	28	6	8	58	1.51
17678438--17678497	29	2.1	28	81	6	68	35	8	15	41	1.77
17680671--17680769	50	2.0	51	89	2	155	40	9	18	32	1.82
17684402--17684717	42	7.5	42	95	1	542	31	21	24	22	1.98
17685018--17685086	21	3.3	20	87	4	93	1	39	20	39	1.61
17690729--17690880	9	17.7	9	74	18	101	32	3	19	45	1.66
17690729--17690839	25	4.4	26	75	13	83	30	2	19	46	1.64
17690729--17690839	34	3.3	32	74	16	93	30	2	19	46	1.64
17690729--17690840	16	6.7	18	75	15	89	31	2	19	46	1.64
17690789--17690840	25	2.1	25	92	0	86	34	5	13	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17690929--17691111	12	15.3	12	73	12	144	33	1	15	49	1.55
17690930--17691111	24	7.6	24	74	13	160	33	1	15	48	1.55
17690853--17691206	119	3.0	119	95	0	645	30	2	16	50	1.58
17691167--17691206	12	3.3	12	85	0	53	37	2	10	50	1.50
17693024--17693122	44	2.2	44	90	0	153	35	10	33	21	1.87
17693724--17693774	24	2.1	24	82	13	61	50	1	0	47	1.12
17694155--17694211	7	8.0	7	74	3	51	43	40	1	14	1.55
17694157--17694211	22	2.5	22	88	2	76	45	38	1	14	1.56
17694691--17695115	114	3.7	113	75	8	387	26	24	18	30	1.98
17694706--17695136	229	1.9	227	84	2	576	25	24	18	31	1.98
17694642--17695132	114	4.3	113	72	9	338	26	23	18	30	1.98
17695138--17695401	113	2.3	113	80	5	257	27	21	15	35	1.94
17696623--17696652	16	1.9	15	93	6	51	26	16	13	43	1.85
17700108--17700142	6	5.8	6	89	0	52	17	11	2	68	1.31
17704562--17704596	6	5.8	6	93	0	61	17	17	0	65	1.27
17705037--17705081	23	2.0	23	86	0	63	24	0	13	62	1.31
17710781--17710861	42	1.9	42	85	5	110	30	13	28	27	1.94
17711707--17712112	44	9.7	44	82	12	509	24	19	26	29	1.99
17711789--17712093	78	3.8	78	84	10	407	23	20	25	29	1.99
17711963--17712110	78	1.9	78	87	6	221	25	19	27	28	1.99
17711707--17712112	165	2.5	166	92	2	665	24	19	26	29	1.99
17712249--17712370	44	2.8	44	78	5	122	30	17	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17712911--17712984	19	3.9	19	88	10	89	39	10	14	35	1.82
17712921--17712984	19	3.3	19	91	8	110	37	10	15	35	1.83
17712924--17712997	21	3.7	20	92	3	114	37	10	14	36	1.82
17712953--17713020	21	3.0	24	85	8	81	38	7	16	38	1.76
17712986--17713030	23	2.0	23	86	4	65	33	4	15	46	1.66
17713224--17713268	23	2.0	23	81	0	54	22	0	15	62	1.33
17722594--17722626	2	16.5	2	93	0	57	0	0	51	48	1.00
17724268--17724411	2	72.0	2	100	0	288	0	0	50	50	1.00
17753384--17753416	7	4.9	7	92	3	50	3	27	0	69	1.03
17762879--17762936	22	2.6	22	78	7	55	70	13	12	3	1.28
17763848--17763981	41	3.4	41	71	11	118	24	14	25	35	1.94
17772714--17772793	40	2.0	40	90	0	124	30	20	22	27	1.98
17781615--17781726	40	2.8	40	82	1	127	35	24	19	20	1.96
17781599--17781740	40	3.5	40	71	9	110	35	21	20	23	1.96
17781777--17781988	41	5.2	41	91	1	336	24	23	24	28	2.00
17781777--17781985	83	2.5	82	91	0	337	23	23	23	28	1.99
17782417--17782449	14	2.3	15	94	5	59	30	0	33	36	1.58
17787515--17787697	43	4.3	43	90	0	285	20	17	32	29	1.95
17787792--17787835	22	2.0	22	90	0	70	45	27	18	9	1.79
17790295--17790332	20	1.9	20	100	0	76	21	21	13	44	1.85
17795277--17795315	20	2.0	20	90	10	62	15	23	5	56	1.59
17795289--17795321	12	2.8	12	95	0	57	15	24	9	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17795583--17795712	50	2.6	51	82	3	165	25	28	19	26	1.99
17797323--17797349	14	1.9	14	100	0	54	29	3	22	44	1.70
17797314--17797354	14	2.7	16	78	21	52	31	4	17	46	1.69
17798385--17798502	43	2.8	42	78	8	123	24	19	26	29	1.98
17803374--17803697	162	2.0	162	97	0	612	32	17	17	32	1.94
17806803--17806843	20	2.0	20	100	0	82	19	34	4	41	1.73
17814451--17814497	20	2.3	21	81	7	60	42	21	23	12	1.87
17816908--17816991	30	2.8	30	76	7	80	40	15	16	27	1.89
17827592--17827641	25	1.9	26	84	8	66	20	12	16	52	1.75
17827837--17827870	13	2.5	13	85	4	50	26	0	2	70	1.01
17829236--17829319	42	2.0	44	85	4	118	47	8	1	42	1.41
17829079--17829437	142	2.5	144	86	6	492	43	9	4	42	1.57
17829720--17829744	6	4.2	6	100	0	50	0	0	16	84	0.63
17833006--17833039	4	8.2	4	87	6	50	76	0	0	23	0.79
17833003--17833039	12	2.9	13	88	8	58	75	0	0	24	0.80
17833717--17833845	40	3.2	40	84	5	163	31	24	25	19	1.98
17833736--17833852	39	3.0	38	78	6	117	32	23	24	18	1.97
17833880--17834132	41	6.1	41	85	2	308	20	18	30	29	1.97
17833880--17834101	84	2.7	81	86	4	291	19	18	32	29	1.96
17834305--17834387	7	11.7	7	70	7	60	18	0	31	50	1.47
17834394--17834467	29	2.6	29	79	14	82	18	0	37	43	1.51
17834424--17834466	7	6.1	7	81	8	52	16	0	37	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834305--17834466	14	11.4	14	72	12	107	18	0	34	46	1.54
17840038--17840245	86	2.4	85	79	7	204	22	18	29	29	1.97
17840018--17840222	43	4.8	43	83	4	211	22	18	30	28	1.97
17854473--17854499	2	13.5	2	100	0	54	48	0	0	51	1.00
17857690--17857722	13	2.6	13	90	4	50	45	3	9	42	1.51
17857992--17858396	202	2.0	203	99	0	803	38	3	15	42	1.65
17865194--17865692	69	7.2	69	78	3	378	36	23	21	19	1.95
17865194--17865692	207	2.4	207	80	2	502	36	23	21	19	1.95
17868756--17868807	21	2.5	21	96	0	95	28	1	13	55	1.49
17882393--17882445	26	2.0	26	96	0	97	37	30	18	13	1.89
17891742--17891804	10	6.2	10	77	15	58	20	4	0	74	0.99
17895557--17895624	9	7.6	9	90	6	111	44	13	10	32	1.77
17895557--17895632	18	4.2	18	90	6	118	42	15	10	31	1.81
17895557--17895632	9	8.4	9	85	5	82	42	15	10	31	1.81
17895640--17895698	17	3.3	17	68	13	55	50	10	3	35	1.53
17895835--17895913	39	2.0	39	97	0	149	18	2	29	49	1.61
17895894--17895918	13	1.9	13	100	0	50	12	0	48	40	1.40
17901454--17901599	74	2.0	74	95	0	265	39	17	5	37	1.73
17902481--17902585	52	2.0	52	94	0	183	15	21	18	44	1.86
17908715--17908857	26	5.6	26	83	7	152	35	22	27	14	1.93
17909290--17909332	21	2.0	21	86	0	59	32	25	4	37	1.77
17909325--17909489	81	2.0	82	98	1	323	30	15	12	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17909575--17909612	16	2.4	16	95	0	67	36	2	34	26	1.71
17911532--17911635	49	2.1	49	90	0	163	51	10	7	29	1.64
17913751--17913821	27	2.5	28	77	20	69	45	2	5	46	1.41
17914468--17914517	26	1.9	26	84	8	66	58	6	4	32	1.41
17914479--17914527	24	1.9	27	84	12	68	61	8	0	30	1.25
17921930--17922510	207	2.8	206	81	2	635	28	23	17	30	1.97
17937279--17937352	36	2.1	36	84	5	96	22	16	17	43	1.88
17939150--17939194	23	2.0	23	100	0	90	13	17	26	42	1.86
17943556--17943614	10	5.9	10	69	15	50	28	3	30	37	1.74
17943561--17943614	20	2.7	20	91	0	90	31	3	29	35	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75