genome.fa.s11.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  60  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19238627--19238906	136	2.1	136	87	1	402	42	12	15	29	1.83
19238855--19239069	98	2.2	98	82	0	250	37	12	17	32	1.87
19238627--19238968	134	2.5	135	80	4	411	41	12	16	30	1.84
19239009--19239316	133	2.3	134	80	8	349	40	12	15	31	1.85
19239189--19239413	107	2.1	107	87	0	315	38	13	16	31	1.87
19245067--19245145	29	2.7	29	73	7	79	22	30	27	18	1.98
19250209--19250246	13	2.9	13	84	7	51	39	0	21	39	1.53
19250185--19250244	26	2.3	26	82	0	66	38	1	23	36	1.65
19251015--19251044	13	2.3	13	100	0	60	36	6	16	40	1.75
19256671--19256989	81	4.0	79	85	4	422	19	14	20	45	1.85
19256670--19257002	27	12.4	27	87	0	382	19	14	20	45	1.85
19259671--19259705	17	2.0	18	88	5	54	8	8	2	80	1.01
19266189--19266229	7	5.7	7	94	2	55	19	0	39	41	1.52
19272741--19272836	18	5.2	18	73	10	61	67	2	4	26	1.19
19272739--19272836	10	10.4	10	70	16	57	68	2	4	25	1.18
19273053--19273143	19	4.9	19	67	12	64	34	4	1	60	1.24
19273109--19273161	27	1.9	28	84	3	72	37	1	0	60	1.08
19273124--19273161	20	2.0	20	84	5	51	36	0	0	63	0.95
19273218--19273418	90	2.2	88	81	8	210	32	6	20	39	1.80
19276219--19276276	28	2.1	28	100	0	116	32	3	0	63	1.11
19280543--19281643	361	3.0	362	88	3	1573	29	9	22	38	1.86
19283670--19283720	26	2.0	26	84	0	66	35	23	23	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19283881--19284020	27	5.2	27	83	3	183	17	15	22	45	1.85
19283878--19284020	54	2.6	54	86	0	205	18	15	22	44	1.87
19285812--19285908	37	2.6	37	95	0	167	31	19	19	28	1.96
19300924--19300984	31	2.0	31	93	0	104	31	11	14	42	1.81
19312463--19312537	31	2.4	31	77	0	87	41	8	12	38	1.72
19318522--19318554	17	1.9	17	93	0	57	24	24	6	45	1.75
19328590--19328633	23	1.9	23	95	0	79	6	31	0	61	1.22
19331024--19331106	24	3.2	27	85	11	129	37	2	10	49	1.51
19331024--19331122	26	3.8	24	80	18	85	37	2	11	49	1.50
19331024--19331128	50	2.1	51	94	1	185	36	1	11	50	1.50
19339381--19339406	3	8.7	3	100	0	52	34	65	0	0	0.93
19339468--19339498	3	10.3	3	92	0	53	32	38	0	29	1.57
19339343--19339539	66	3.0	66	95	1	342	28	43	5	22	1.75
19341683--19341792	21	5.2	21	79	4	96	34	9	18	38	1.82
19343149--19343188	21	1.9	21	89	0	62	37	15	27	20	1.92
19357635--19357694	5	11.4	5	75	19	52	20	1	3	75	1.04
19357636--19357694	23	2.7	22	76	19	70	20	1	3	74	1.05
19366711--19366815	31	3.4	31	74	7	115	35	2	7	54	1.44
19366704--19366821	61	2.0	60	91	1	191	36	2	8	52	1.45
19368794--19369343	274	2.0	274	96	0	1010	32	24	12	30	1.92
19371282--19371331	17	2.9	17	87	3	64	34	0	0	66	0.92
19372333--19372371	19	2.0	20	85	5	53	56	0	10	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19372909--19372971	31	2.1	30	82	14	76	15	26	1	55	1.50
19374045--19374074	2	15.0	2	100	0	60	50	0	0	50	1.00
19375517--19375661	71	2.0	72	98	1	283	39	5	2	52	1.39
19379753--19379792	14	2.9	14	84	0	53	32	7	17	42	1.77
19379775--19379814	20	2.0	20	90	0	62	32	10	12	45	1.75
19379762--19379827	34	1.9	35	90	3	107	33	9	13	43	1.76
19380459--19380551	47	2.0	47	100	0	186	25	26	23	23	2.00
19387750--19387793	20	2.2	20	95	0	79	40	27	2	29	1.68
19387853--19387885	17	1.9	17	100	0	66	48	12	0	39	1.40
19389969--19390009	21	1.9	22	95	5	75	26	2	4	65	1.25
19395582--19395627	21	2.2	21	84	7	58	71	2	15	10	1.23
19396855--19396993	44	3.2	44	64	10	113	27	22	23	26	2.00
19396855--19397445	87	6.9	87	90	2	870	30	23	22	24	1.99
19397496--19397704	44	4.8	44	72	8	142	30	19	22	27	1.98
19403229--19403310	41	2.0	41	100	0	164	41	26	12	19	1.87
19409139--19409197	27	2.2	26	82	14	75	35	8	6	49	1.60
19410446--19410537	35	2.6	35	76	6	105	23	20	19	35	1.95
19412962--19413229	64	4.2	64	81	6	303	32	22	24	20	1.98
19412970--19413230	127	2.1	127	86	4	366	32	21	24	21	1.98
19414621--19414711	23	4.0	23	91	0	146	18	20	27	32	1.96
19414622--19414718	46	2.1	46	96	0	176	20	20	27	30	1.98
19421719--19421798	27	3.0	27	86	0	106	23	25	11	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19421731--19421826	27	3.6	27	78	4	77	25	22	7	44	1.78
19421955--19422022	27	2.5	28	83	7	86	26	25	16	32	1.96
19424714--19424739	10	2.6	10	100	0	52	34	0	0	65	0.93
19425463--19425489	2	13.5	2	100	0	54	48	0	0	51	1.00
19429892--19429933	21	2.0	21	100	0	84	33	4	9	52	1.55
19436184--19436227	22	1.9	24	86	9	65	40	13	2	43	1.57
19438811--19438848	20	1.9	20	88	0	58	55	10	13	21	1.67
19442633--19442675	19	2.2	20	87	4	61	27	18	18	34	1.95
19443881--19443924	22	2.0	22	82	8	54	31	0	9	59	1.29
19444625--19444665	13	2.9	15	75	14	50	46	43	0	9	1.36
19446757--19446842	40	2.2	40	93	0	154	33	8	17	40	1.79
19451602--19451850	124	2.0	125	98	0	482	44	5	8	41	1.58
19453504--19453536	11	2.9	12	86	13	52	66	0	0	33	0.92
19462718--19462768	18	2.7	19	90	6	77	21	25	0	52	1.47
19467453--19467478	11	2.4	11	100	0	52	26	0	0	73	0.84
19471953--19471994	22	1.9	22	90	9	68	26	7	2	64	1.32
19473826--19473850	5	5.0	5	100	0	50	40	0	0	60	0.97
19510233--19510346	34	3.4	34	66	22	94	38	18	20	22	1.93
19510211--19510665	68	6.7	68	81	2	502	36	16	21	25	1.94
19515510--19515549	14	2.9	14	88	0	62	32	7	15	45	1.74
19515518--19515584	34	1.9	35	87	3	100	31	8	11	47	1.71
19515533--19515572	20	2.0	20	95	0	71	27	10	10	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19517993--19518020	12	2.3	12	100	0	56	67	7	0	25	1.15
19519815--19519844	7	4.1	7	91	8	51	16	0	0	83	0.65
19519815--19519844	15	2.1	14	93	6	51	16	0	0	83	0.65
19520315--19520350	8	4.4	8	86	6	54	83	0	2	13	0.76
19520318--19520350	17	1.9	17	93	0	57	81	0	3	15	0.80
19520429--19520464	18	2.0	18	94	0	63	77	0	8	13	0.98
19523741--19523810	30	2.4	30	80	7	81	50	5	2	41	1.41
19525722--19525771	19	2.6	20	87	12	70	62	2	4	32	1.25
19528878--19529498	196	3.2	194	84	6	753	42	10	15	31	1.81
19531915--19531951	18	2.1	18	94	0	65	40	16	27	16	1.89
19542134--19542232	41	2.4	42	87	1	146	26	28	22	23	1.99
19544758--19544803	19	2.3	20	81	3	58	32	10	4	52	1.56
19552433--19552604	45	3.8	45	85	3	204	37	29	12	20	1.89
19560228--19560275	19	2.5	19	86	3	60	22	6	2	68	1.23
19560228--19560299	10	7.4	10	75	12	53	25	5	1	68	1.20
19560226--19560314	10	8.8	10	67	18	51	23	5	2	68	1.22
19560261--19560319	20	2.9	22	85	9	72	22	6	1	69	1.21
19560387--19560460	27	2.7	27	80	10	80	31	2	4	62	1.28
19561948--19562000	22	2.5	21	82	8	63	26	0	9	64	1.24
19574425--19574478	26	2.0	26	82	3	63	20	11	9	59	1.59
19575394--19575429	10	3.6	10	92	7	56	72	0	2	25	0.98
19577480--19577535	20	2.8	20	75	0	58	35	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19578369--19578442	28	2.6	28	83	10	96	40	21	18	18	1.91
19578395--19578450	28	2.0	28	86	6	78	41	23	17	17	1.90
19584902--19584951	25	2.0	25	84	0	64	44	18	12	26	1.84
19586581--19586932	175	2.0	177	98	1	690	30	11	21	36	1.89
19589718--19589749	16	2.0	17	88	11	50	43	12	15	28	1.83
19589629--19590280	323	2.0	323	89	4	1012	31	26	15	26	1.96
19596842--19596876	17	2.1	17	89	10	54	65	5	5	22	1.36
19597027--19597062	18	2.0	18	100	0	72	16	27	22	33	1.95
19601168--19601242	23	3.2	24	68	21	77	28	4	37	30	1.75
19601146--19601243	46	2.1	46	100	0	196	27	4	37	30	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75