genome.fa.s11.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr12
Parameters: 2 7 7 80 10 50 1000
Length:  24583705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   

This is table  23  of  75  ( 8944 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6730883--6730923	4	10.2	4	94	0	73	26	0	24	48	1.51
6731726--6731789	29	2.2	29	83	5	76	29	26	29	14	1.95
6733574--6733756	51	3.6	50	77	6	156	24	16	27	31	1.96
6733762--6733854	45	2.1	45	93	0	159	26	20	22	30	1.98
6738037--6738107	20	3.7	20	77	12	85	47	7	0	45	1.30
6739626--6739657	15	2.1	15	94	0	55	71	6	6	15	1.26
6743511--6743551	16	2.6	16	92	0	64	46	2	2	48	1.28
6747832--6748067	117	2.0	118	99	0	465	36	5	9	48	1.57
6748580--6748662	41	2.0	41	97	0	157	18	25	24	32	1.97
6749398--6749432	17	1.9	19	88	11	56	20	2	11	65	1.37
6757706--6757747	22	2.0	21	85	4	57	42	23	0	33	1.55
6760086--6760190	50	2.1	50	90	0	165	53	6	2	37	1.42
6760320--6760386	28	2.4	28	79	0	71	53	1	13	31	1.49
6761040--6761135	44	2.2	45	86	3	142	41	6	17	34	1.75
6771220--6771474	125	2.0	125	87	1	366	32	16	21	29	1.95
6776729--6777191	126	3.7	126	87	2	626	31	17	22	28	1.96
6783453--6783520	30	2.2	31	84	2	84	29	11	13	45	1.79
6783541--6783649	45	2.4	45	80	3	130	28	19	11	41	1.85
6786458--6786502	20	2.3	19	88	11	65	44	13	8	33	1.75
6786427--6786532	54	2.0	54	84	0	140	45	13	9	32	1.75
6789430--6789475	18	2.6	18	82	0	56	32	4	4	58	1.37
6789498--6789703	107	1.9	108	91	6	339	33	2	6	57	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6791438--6791491	23	2.3	24	75	21	60	44	3	0	51	1.19
6796155--6796269	44	2.6	44	74	14	103	23	15	26	34	1.95
6813220--6813257	14	2.7	14	92	8	60	39	2	15	42	1.61
6813249--6813286	19	2.0	19	100	0	76	26	10	15	47	1.78
6813362--6813404	18	2.4	18	96	0	77	46	2	0	51	1.13
6813532--6813559	14	2.0	14	100	0	56	50	7	0	42	1.30
6814585--6814645	32	1.9	32	93	0	104	49	18	4	27	1.68
6814618--6814672	27	2.0	27	86	6	76	49	18	5	27	1.69
6817803--6817837	16	2.2	16	94	0	61	45	40	0	14	1.45
6819101--6819140	17	2.4	17	91	0	62	75	0	0	25	0.81
6819101--6819165	17	4.1	16	75	16	55	70	1	0	27	0.96
6819112--6819163	24	2.1	24	89	3	77	73	1	0	25	0.94
6824117--6824165	23	2.1	23	100	0	98	38	14	20	26	1.91
6829695--6829732	19	2.0	20	89	5	60	60	2	0	36	1.11
6835016--6835045	16	1.9	15	93	6	51	40	0	3	56	1.16
6844557--6844595	5	7.6	5	82	5	51	35	0	23	41	1.55
6848182--6848229	25	1.9	25	87	8	71	29	20	12	37	1.90
6852697--6852757	32	1.9	32	90	3	97	19	19	6	54	1.66
6861189--6861232	18	2.3	20	84	7	56	29	2	13	54	1.51
6872189--6872251	30	2.1	30	96	0	117	31	6	38	23	1.80
6875324--6875463	42	3.3	42	86	1	181	27	27	19	25	1.99
6880784--6882293	545	2.8	545	97	0	2774	35	17	12	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6883945--6884001	29	2.0	28	82	3	69	43	5	5	45	1.49
6885645--6885784	42	3.3	42	86	1	181	27	27	19	25	1.99
6889938--6890108	66	2.6	65	85	4	209	39	19	27	13	1.89
6890080--6890191	21	5.3	21	84	0	98	35	17	42	3	1.67
6890090--6890191	42	2.4	42	86	0	132	36	17	43	2	1.65
6890560--6890704	43	3.4	43	82	11	172	35	25	20	18	1.95
6896958--6896988	2	15.5	2	100	0	62	51	0	0	48	1.00
6903137--6903176	2	20.0	2	100	0	80	0	0	50	50	1.00
6908291--6908333	22	2.0	22	85	0	59	11	18	25	44	1.84
6908427--6908608	43	4.3	43	87	3	260	31	29	18	20	1.96
6908556--6908696	42	3.3	42	83	12	180	33	29	15	21	1.95
6919003--6919119	41	2.8	40	82	10	146	26	28	23	22	1.99
6919151--6919288	40	3.5	38	79	7	141	19	21	20	39	1.93
6919171--6919287	40	2.9	41	86	3	150	22	22	18	36	1.95
6919518--6919552	18	1.9	18	94	0	61	42	8	2	45	1.49
6927972--6928002	13	2.3	13	94	5	53	74	0	12	12	1.08
6927972--6928002	7	4.6	7	92	8	55	74	0	12	12	1.08
6929284--6929640	44	7.7	44	69	18	213	31	18	22	27	1.97
6929312--6929493	98	1.9	97	80	6	215	32	19	19	28	1.96
6929284--6929696	142	2.9	142	94	0	709	32	18	21	27	1.97
6929772--6930063	50	5.8	50	71	5	223	29	24	22	23	1.99
6929771--6930054	100	2.8	98	81	5	338	29	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6930260--6930310	12	4.1	12	78	21	52	78	1	0	19	0.85
6930260--6930309	21	2.3	22	86	10	68	78	2	0	20	0.86
6930274--6930310	15	2.4	16	91	8	60	78	0	0	21	0.75
6930641--6931154	256	2.0	258	99	0	1014	32	10	16	40	1.84
6937930--6937983	28	2.0	27	85	10	74	57	0	1	40	1.09
6937945--6937983	17	2.2	19	86	9	55	61	0	0	38	0.96
6938597--6938639	15	2.7	15	82	7	50	39	0	2	58	1.11
6940818--6940849	3	10.7	3	93	0	55	62	0	37	0	0.95
6943177--6943209	2	16.5	2	100	0	66	0	48	0	51	1.00
6955083--6955107	2	12.5	2	100	0	50	52	48	0	0	1.00
6959551--6959593	20	2.2	20	87	4	61	41	2	0	55	1.12
6959701--6959767	21	3.1	21	72	4	62	53	1	0	44	1.09
6960964--6961006	20	2.2	20	87	4	61	41	2	0	55	1.12
6961114--6961180	21	3.1	21	72	4	62	53	1	0	44	1.09
6962386--6962428	20	2.2	20	87	4	61	41	2	0	55	1.12
6962536--6962602	21	3.1	21	72	4	62	53	1	0	44	1.09
6963536--6963581	20	2.2	22	84	7	60	30	0	4	65	1.12
6967160--6967186	4	6.8	4	100	0	54	74	0	0	25	0.83
6967251--6967572	113	2.9	112	88	7	374	58	3	8	29	1.45
6967410--6967571	37	4.3	37	64	20	102	60	3	8	27	1.41
6967410--6967465	18	3.1	18	70	14	51	64	3	7	25	1.35
6967323--6967572	113	2.2	113	99	0	491	59	2	8	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6970115--6970158	14	3.4	13	81	9	54	72	11	15	0	1.11
6970122--6970162	13	3.1	13	82	6	55	73	7	19	0	1.07
6975205--6975246	22	1.9	22	85	0	57	30	4	11	52	1.59
6979350--6979403	16	3.4	16	81	0	72	31	33	1	33	1.69
6985853--6985885	2	17.0	2	93	6	59	48	0	0	51	1.00
6997565--6997623	31	1.9	30	83	10	75	23	3	13	59	1.50
7004386--7004428	22	2.0	21	86	4	59	18	2	0	79	0.85
7008185--7008777	44	13.7	43	71	11	338	28	22	19	29	1.98
7008231--7008860	44	14.7	40	70	12	186	28	22	19	28	1.98
7008455--7008643	84	2.2	84	90	0	306	33	22	19	24	1.97
7008498--7008891	217	1.8	216	85	3	549	28	22	19	29	1.98
7008231--7008860	301	2.1	301	90	0	1019	28	22	19	28	1.98
7008745--7009027	147	1.9	147	86	1	406	27	21	21	30	1.98
7023695--7023798	51	2.0	51	96	0	190	16	11	22	50	1.77
7023717--7023796	24	3.2	25	61	22	58	16	12	21	50	1.78
7024901--7024988	43	2.0	43	86	4	124	34	30	15	19	1.93
7031087--7031393	36	8.6	36	97	0	564	35	0	16	47	1.47
7031441--7031467	13	2.1	13	100	0	54	37	11	0	51	1.37
7032297--7032336	19	2.3	17	87	12	55	10	12	5	72	1.26
7032430--7032484	28	2.0	28	92	0	92	47	12	20	20	1.82
7032490--7032697	71	2.9	72	75	5	224	44	13	7	34	1.71
7033301--7033533	117	2.0	117	95	1	423	39	14	18	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7034844--7034887	22	2.0	23	86	8	65	61	13	0	25	1.32
7035864--7035935	27	2.7	27	84	0	99	30	22	36	11	1.89
7041160--7041222	32	2.0	32	90	0	99	49	14	0	36	1.44
7048025--7048098	37	2.0	37	94	0	130	29	12	36	21	1.90
7057662--7057710	16	3.3	16	76	23	54	24	0	0	75	0.80
7057662--7057709	15	3.3	15	78	16	57	25	0	0	75	0.81
7065156--7065197	22	1.9	22	95	0	75	38	0	4	57	1.20
7065866--7065892	5	5.4	5	100	0	54	18	62	0	18	1.32
7068537--7068574	1	38.0	1	100	0	76	100	0	0	0	0.00
7069622--7069646	7	3.6	7	100	0	50	0	12	0	88	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75